| --- |
| license: mit |
| library_name: onnx |
| tags: |
| - protein |
| - intrinsic-disorder |
| - protein-disorder-prediction |
| - onnx |
| - udonpred |
| --- |
| |
| # UdonPred prediction heads (ONNX) |
|
|
| The exported ONNX prediction heads for [UdonPred](https://github.com/davidwagemann/udonpred), |
| one per disorder definition. Each head maps per-residue **ProstT5** |
| (`Rostlab/ProstT5_fp16`) embeddings of shape `(L, 1024)` to per-residue disorder |
| scores. |
|
|
| | File | Target | |
| | --- | --- | |
| | `trizod.onnx` | TriZOD | |
| | `trizod2.onnx` | TriZOD, retrained on the newer TriZOD set | |
| | `chezod.onnx` | CheZOD | |
| | `disprot.onnx` | DisProt | |
| | `softdis.onnx` | SoftDis | |
| | `pdbflex.onnx` | PDBFlex | |
| | `atlas.onnx` | ATLAS | |
| | `plddt.onnx` | pLDDT | |
|
|
| These heads do **not** contain the protein language model. Precompute ProstT5 |
| embeddings first (see the repository's `udonpred-embed` command / EMBEDDINGS.md), |
| then run the heads with `udonpred-caid` / `udonpred-predict`. |
|
|
| ## Releases |
|
|
| Consumers pin a tagged revision (e.g. `udonpred-caid ... --revision v0.2.0`). |
|
|
| | Tag | Change | |
| | --- | --- | |
| | `v0.1.0` | Initial 7 heads (trizod, chezod, disprot, softdis, pdbflex, atlas, plddt). | |
| | `v0.2.0` | Updated `trizod`; added the retrained `trizod2` head. | |
|
|
