metadata
tags:
- protein
- biology
- kinase
- sequence-classification
Kinase–Substrate Interaction Classifier
Fine-tuned from TAPE ProteinBERT (bert-base) on kinase–substrate pairs.
Input
Concatenated kinase + <sep> + substrate amino acid sequences.
Output
Binary classification: 1 = interaction, 0 = no interaction
SETUP ENV
pip install tensorboard
pip install einops
pip install scikit-learn
pip install plotnine
pip install seaborn
pip install tape-proteins pandas numpy pyyaml tqdm scikit-learn tensorboard
pip install transformers
pip install torch
Inference
from tape import ProteinBertForSequenceClassification, TAPETokenizer
model = ProteinBertForSequenceClassification.from_pretrained("steveyu323/kinbert_v2_long")