| """ |
| MuLGIT: Multi-layer Genotype Integration Transformer |
| ===================================================== |
| |
| Causal deep learning-powered cross-layer multi-omics harmonization and |
| integration framework following the central dogma of biology for deciphering |
| molecular interplays underlying exceptional longevity. |
| |
| Installation |
| ------------ |
| pip install -e . |
| |
| Usage |
| ----- |
| python -m mulgit.pipeline --mode quick_test |
| python -m mulgit.pipeline --mode train --data synthetic --epochs 50 |
| """ |
|
|
| from setuptools import setup, find_packages |
|
|
| setup( |
| name="mulgit", |
| version="0.1.0", |
| description="Multi-layer Genotype Integration Transformer for Exceptional Longevity", |
| author="MuLGIT Team", |
| packages=find_packages(), |
| python_requires=">=3.10", |
| install_requires=[ |
| "torch>=2.0.0", |
| "transformers>=4.40.0", |
| "datasets>=2.14.0", |
| "trackio>=0.1.0", |
| "numpy>=1.24.0", |
| "pandas>=2.0.0", |
| "scikit-learn>=1.3.0", |
| ], |
| extras_require={ |
| "dev": [ |
| "pytest>=7.0", |
| "black>=23.0", |
| "isort>=5.12", |
| ], |
| "huggingface": [ |
| "huggingface_hub>=0.20.0", |
| "peft>=0.7.0", |
| ], |
| }, |
| classifiers=[ |
| "Development Status :: 3 - Alpha", |
| "Intended Audience :: Science/Research", |
| "Topic :: Scientific/Engineering :: Artificial Intelligence", |
| "Topic :: Scientific/Engineering :: Bio-Informatics", |
| "Programming Language :: Python :: 3", |
| "Programming Language :: Python :: 3.10", |
| ], |
| ) |
|
|
