Add pipeline tag and improve model card
#1
by nielsr HF Staff - opened
README.md
CHANGED
|
@@ -1,26 +1,30 @@
|
|
| 1 |
---
|
| 2 |
license: apache-2.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
---
|
| 4 |
|
| 5 |
<div align="center">
|
| 6 |
<img src="https://cdn-uploads.huggingface.co/production/uploads/67d9504a41d31cc626fcecc8/cE7UgFfJJ2gUHJr0SSEhc.png"> </img>
|
| 7 |
</div>
|
| 8 |
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
|
| 12 |
[π Paper](https://arxiv.org/abs/2503.19740) - [π€ GitHub](https://github.com/visurg-ai/LEMON)
|
| 13 |
|
| 14 |
-
|
| 15 |
-
LemonFM foundation model, please visit our github repository at [π€ GitHub](https://github.com/visurg-ai/LEMON)) .
|
| 16 |
|
|
|
|
|
|
|
|
|
|
| 17 |
|
| 18 |
If you use our dataset, model, or code in your research, please cite our paper:
|
| 19 |
|
| 20 |
-
```
|
| 21 |
@misc{che2025lemonlargeendoscopicmonocular,
|
| 22 |
title={LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settings},
|
| 23 |
-
author={Chengan Che and Chao Wang and Tom Vercauteren
|
| 24 |
year={2025},
|
| 25 |
eprint={2503.19740},
|
| 26 |
archivePrefix={arXiv},
|
|
@@ -29,10 +33,9 @@ If you use our dataset, model, or code in your research, please cite our paper:
|
|
| 29 |
}
|
| 30 |
```
|
| 31 |
|
|
|
|
| 32 |
|
| 33 |
-
|
| 34 |
-
This Hugging Face repository includes video storyboard classification models, frame classification models, and non-surgical object detection models. The model loader file can be found at [model_loader.py](https://huggingface.co/visurg/Surg3M_curation_models/blob/main/model_loader.py)
|
| 35 |
-
|
| 36 |
|
| 37 |
<div align="center">
|
| 38 |
<table style="margin-left: auto; margin-right: auto;">
|
|
@@ -59,15 +62,16 @@ This Hugging Face repository includes video storyboard classification models, fr
|
|
| 59 |
</table>
|
| 60 |
</div>
|
| 61 |
|
| 62 |
-
|
| 63 |
The data curation pipeline leading to the clean videos in the LEMON dataset is as follows:
|
| 64 |
<div align="center">
|
| 65 |
<img src="https://cdn-uploads.huggingface.co/production/uploads/67d9504a41d31cc626fcecc8/jzw36jlPT-V_I-Vm01OzO.png"> </img>
|
| 66 |
</div>
|
| 67 |
|
| 68 |
-
Usage
|
| 69 |
-
|
| 70 |
-
|
|
|
|
|
|
|
| 71 |
```python
|
| 72 |
import torch
|
| 73 |
import torchvision
|
|
@@ -102,7 +106,8 @@ Usage
|
|
| 102 |
outputs = net(img_tensor)
|
| 103 |
```
|
| 104 |
|
| 105 |
-
|
|
|
|
| 106 |
|
| 107 |
```python
|
| 108 |
import torch
|
|
@@ -137,7 +142,8 @@ Usage
|
|
| 137 |
outputs = net(img_tensor)
|
| 138 |
```
|
| 139 |
|
| 140 |
-
|
|
|
|
| 141 |
|
| 142 |
```python
|
| 143 |
import torch
|
|
@@ -170,4 +176,4 @@ Usage
|
|
| 170 |
|
| 171 |
# Extract features from the image
|
| 172 |
outputs = net(img_tensor)
|
| 173 |
-
```
|
|
|
|
| 1 |
---
|
| 2 |
license: apache-2.0
|
| 3 |
+
pipeline_tag: image-classification
|
| 4 |
+
tags:
|
| 5 |
+
- medical
|
| 6 |
+
- surgical
|
| 7 |
+
- endoscopy
|
| 8 |
---
|
| 9 |
|
| 10 |
<div align="center">
|
| 11 |
<img src="https://cdn-uploads.huggingface.co/production/uploads/67d9504a41d31cc626fcecc8/cE7UgFfJJ2gUHJr0SSEhc.png"> </img>
|
| 12 |
</div>
|
| 13 |
|
|
|
|
|
|
|
|
|
|
| 14 |
[π Paper](https://arxiv.org/abs/2503.19740) - [π€ GitHub](https://github.com/visurg-ai/LEMON)
|
| 15 |
|
| 16 |
+
This repository provides the models used in the data curation pipeline for the paper [LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settings](https://arxiv.org/abs/2503.19740). These models assist in constructing the LEMON dataset by filtering and processing surgical video content.
|
|
|
|
| 17 |
|
| 18 |
+
For more details about the LEMON dataset and our LemonFM foundation model, please visit our [GitHub repository](https://github.com/visurg-ai/LEMON).
|
| 19 |
+
|
| 20 |
+
## Citation
|
| 21 |
|
| 22 |
If you use our dataset, model, or code in your research, please cite our paper:
|
| 23 |
|
| 24 |
+
```bibtex
|
| 25 |
@misc{che2025lemonlargeendoscopicmonocular,
|
| 26 |
title={LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settings},
|
| 27 |
+
author={Chengan Che and Chao Wang and Tom Vercauteren messenger, Sophia Tsoka and Luis C. Garcia-Peraza-Herrera},
|
| 28 |
year={2025},
|
| 29 |
eprint={2503.19740},
|
| 30 |
archivePrefix={arXiv},
|
|
|
|
| 33 |
}
|
| 34 |
```
|
| 35 |
|
| 36 |
+
## Model Overview
|
| 37 |
|
| 38 |
+
This Hugging Face repository includes video storyboard classification models, frame classification models, and non-surgical object detection models. The model loader file can be found at [model_loader.py](https://huggingface.co/visurg/Surg3M_curation_models/blob/main/model_loader.py).
|
|
|
|
|
|
|
| 39 |
|
| 40 |
<div align="center">
|
| 41 |
<table style="margin-left: auto; margin-right: auto;">
|
|
|
|
| 62 |
</table>
|
| 63 |
</div>
|
| 64 |
|
|
|
|
| 65 |
The data curation pipeline leading to the clean videos in the LEMON dataset is as follows:
|
| 66 |
<div align="center">
|
| 67 |
<img src="https://cdn-uploads.huggingface.co/production/uploads/67d9504a41d31cc626fcecc8/jzw36jlPT-V_I-Vm01OzO.png"> </img>
|
| 68 |
</div>
|
| 69 |
|
| 70 |
+
## Usage
|
| 71 |
+
|
| 72 |
+
### Video classification models
|
| 73 |
+
**Video classification models** are employed in step **2** of the data curation pipeline to classify a video storyboard as either surgical or non-surgical:
|
| 74 |
+
|
| 75 |
```python
|
| 76 |
import torch
|
| 77 |
import torchvision
|
|
|
|
| 106 |
outputs = net(img_tensor)
|
| 107 |
```
|
| 108 |
|
| 109 |
+
### Frame classification models
|
| 110 |
+
**Frame classification models** are used in step **3** of the data curation pipeline to classify a frame as either surgical or non-surgical:
|
| 111 |
|
| 112 |
```python
|
| 113 |
import torch
|
|
|
|
| 142 |
outputs = net(img_tensor)
|
| 143 |
```
|
| 144 |
|
| 145 |
+
### Non-surgical object detection models
|
| 146 |
+
**Non-surgical object detection models** are used to obliterate the non-surgical region in the surgical frames (e.g. user interface information):
|
| 147 |
|
| 148 |
```python
|
| 149 |
import torch
|
|
|
|
| 176 |
|
| 177 |
# Extract features from the image
|
| 178 |
outputs = net(img_tensor)
|
| 179 |
+
```
|