Instructions to use wangrice/icd_embedding_models with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Keras
How to use wangrice/icd_embedding_models with Keras:
# Available backend options are: "jax", "torch", "tensorflow". import os os.environ["KERAS_BACKEND"] = "jax" import keras model = keras.saving.load_model("hf://wangrice/icd_embedding_models") - Notebooks
- Google Colab
- Kaggle
| library_name: keras | |
| tags: | |
| - healthcare | |
| - icd-10 | |
| - mortality-prediction | |
| - readmission-prediction | |
| - deepset | |
| - tabular | |
| # NRD ICD-10 outcome models | |
| DeepSet + (optional) Transformer models trained on the National Readmission | |
| Database (NRD, 2016β2020) to predict two outcomes from up to 40 ICD-10 | |
| diagnosis codes plus demographics (AGE, FEMALE, PAY1, ZIPINC_QRTL). | |
| | Subfolder | Outcome | Description | | |
| |----------------------|----------|--------------------------------------| | |
| | `mortality_30day/` | `MOR30` | 30-day post-discharge mortality | | |
| | `readmission_30day/` | `REA30` | 30-day all-cause readmission | | |
| `encoders/` holds the fitted `LabelEncoder` (ICD-10 β integer IDs) and | |
| `MinMaxScaler` (AGE) used at training time. Inputs must be encoded with the | |
| **same** artifacts at inference, or predictions will be meaningless. | |
| ## Loading a model | |
| The `.keras` files contain three custom serializable components | |
| (`DeepSet`, `TransformerBlock`, `F2Score`) that must be importable (and | |
| registered via `@tf.keras.utils.register_keras_serializable(package="Custom")`) | |
| before `load_model`: | |
| ```python | |
| import tensorflow as tf | |
| from huggingface_hub import hf_hub_download | |
| # Register your custom classes β see src/train/ in the source repo | |
| from custom_layers import DeepSet, TransformerBlock, F2Score # noqa: F401 | |
| path = hf_hub_download( | |
| repo_id="<user-or-org>/<repo-name>", | |
| filename="mortality_30day/mort_hypertrial_auc.keras", | |
| ) | |
| model = tf.keras.models.load_model(path) | |
| ``` | |
| ## Variants | |
| Within each outcome subfolder, file suffixes denote the architecture: | |
| - `_hypertrial_auc` β best model from the Keras-Tuner search (recommended) | |
| - `_icd_only` β ICD codes only, no demographics (ablation) | |
| - `_no_deepset` β flattened ICD input, no DeepSet aggregation (ablation) | |
| - `_with_transformers` / `_transformer` β DeepSet + TransformerBlocks | |
| ## Data restrictions | |
| NRD is a HCUP product distributed under a Data Use Agreement. These weights | |
| do not contain individual records, but downstream users should be aware of | |
| the source. | |