update

README.md

@@ -23,7 +23,7 @@ SigSpace
 - Ishita Mangla - Lila Sciences - imangla@stanford.edu
 - Giovanni Palla - Chan Zuckerberg Initiative - gpalla@chanzuckerberg.com
 - Rohit Khurana - Stanford - rkhurana@stanford.edu
-- Siddhant Sanghi - UC Davis - ssanghi@ucdavis.edu
+- Sid Sanghi - UC Davis - ssanghi@ucdavis.edu
 - Kuan Pang - Stanford - kuanpang@stanford.edu
 - Yanay Rosen - Stanford - yanay@stanford.edu
 - Yasha Ektefaie - Harvard - yasha_ektefaie@g.harvard.edu
@@ -47,6 +47,22 @@ Specifically:
 - JUMP: We use the JUMP dataset, which captures morphological profiles of cells in response to chemical and genetic perturbations. High-content imaging and automated feature extraction are used to quantify cellular changes, enabling large-scale profiling of perturbation effects across diverse biological contexts.
 - UCE-CXG-EMBEDDING: natural perturbation search using AI virtual cell.
 
+## Data
+The following datasets are used in our project:
+
+- **drug_metadata_inchikey.csv**: Drug metadata from Tahoe-100M including InChIKey identifiers for chemical structure representation.
+- **compound_genetic_perturbation_cosine_similarity_inchikey.csv**: Cosine similarity scores between compound and genetic perturbations in Jump dataset.
+- **Tahoe_PRISM_cell_by_drug_ic50_matrix_named.csv**: IC50 values showing drug sensitivity across cell lines.
+- **filtered_results.csv**: Filtered NCI60 LC50 data for drug response analysis.
+- **cell_line_metadata.csv**: Comprehensive metadata for cell lines in the Tahoe dataset.
+- **drug_metadata.csv**: Detailed information about drugs in the Tahoe dataset.
+- **tahoe_vision_scores.h5ad**: Vision scores in AnnData format capturing cellular morphological changes.
+- **Tahoe_PRISM_matched_cell_metadata_final.csv**: Cell metadata for PRISM-Tahoe matched cell lines.
+- **Tahoe_PRISM_matched_drug_metadata_final.csv**: Drug metadata for PRISM-Tahoe matched compounds.
+- **in_tahoe_search_result_df.csv**: Search results for perturbations within the Tahoe dataset embedded with UCE.
+- **cxg_search_result_df.csv**: Cross-dataset search results using CXG embeddings with UCE.
+
+
 ## Results
 
 We have developed a Gradio application that accesses these databases and performs complex queries, enhancing and grounding the reasoning in real biological measurements.