Instructions to use zhihan1996/DNA_bert_6 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use zhihan1996/DNA_bert_6 with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="zhihan1996/DNA_bert_6", trust_remote_code=True)# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("zhihan1996/DNA_bert_6", trust_remote_code=True) model = AutoModelForMaskedLM.from_pretrained("zhihan1996/DNA_bert_6", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Fix AutoModel not loading model correctly due to config_class inconsistency
#11
by liamclarkza - opened
- dnabert_layer.py +16 -0
dnabert_layer.py
CHANGED
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@@ -9,22 +9,38 @@ from transformers.models.bert.modeling_bert import BertForPreTraining as Transfo
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from transformers.models.bert.modeling_bert import BertPreTrainedModel
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from transformers.modeling_outputs import SequenceClassifierOutput
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class BertModel(TransformersBertModel):
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def __init__(self, config):
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super().__init__(config)
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class BertForMaskedLM(TransformersBertForMaskedLM):
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def __init__(self, config):
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super().__init__(config)
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class BertForPreTraining(TransformersBertForPreTraining):
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def __init__(self, config):
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super().__init__(config)
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class DNABertForSequenceClassification(BertPreTrainedModel):
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def __init__(self, config):
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super().__init__(config)
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self.num_labels = config.num_labels
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from transformers.models.bert.modeling_bert import BertPreTrainedModel
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from transformers.modeling_outputs import SequenceClassifierOutput
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from .configuration_bert import BertConfig
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class BertModel(TransformersBertModel):
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config_class = BertConfig
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def __init__(self, config):
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super().__init__(config)
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class BertForMaskedLM(TransformersBertForMaskedLM):
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config_class = BertConfig
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def __init__(self, config):
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super().__init__(config)
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class BertForPreTraining(TransformersBertForPreTraining):
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config_class = BertConfig
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def __init__(self, config):
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super().__init__(config)
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class DNABertForSequenceClassification(BertPreTrainedModel):
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config_class = BertConfig
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def __init__(self, config):
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super().__init__(config)
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self.num_labels = config.num_labels
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