examples/ATTRIBUTION.md

Measured-data fixtures

The included H5AD files contain subsets of released measured RNA counts.

examples/tahoe/tahoe.h5ad was prepared from the Tahoe-100M expression shards 600, 601, and 2600, with the official sample and gene metadata. The subset contains A549 cells (CVCL_0023) from plates 6 and 14. Source records are retained in the observation fields.

Source: https://huggingface.co/datasets/tahoebio/Tahoe-100M License listed by the source dataset: CC0-1.0.

examples/sciplex/sciplex_prototype.h5ad contains 120 A549 cells from the corrected sci-Plex3 object in scPerturb v1.4, with 24-hour exposures at 0.1 and 1 µM and matched controls. source_row identifies the original row. The subset includes nine compound names with exact matches to Tahoe structure metadata.

Source: Peidli, Green, Shen, Gross, Min, Garda, Yuan, Schumacher, Taylor-King, Marks, Luna, Blüthgen, and Sander. scPerturb Single-Cell Perturbation Data, version 1.4. https://doi.org/10.5281/zenodo.13350497 License: Creative Commons Attribution 4.0 International. https://creativecommons.org/licenses/by/4.0/ Original sci-Plex publication: Srivatsan et al. Massively multiplex chemical transcriptomics at single-cell resolution. Science (2020).

The fixture sizes are intended for execution checks. They do not support full-study performance conclusions.