|
|
--- |
|
|
license: mit |
|
|
tags: |
|
|
- pytorch |
|
|
- diffusers |
|
|
- unconditional-image-generation |
|
|
- diffusion-models-class |
|
|
- medical-imaging |
|
|
- brain-mri |
|
|
- multiple-sclerosis |
|
|
--- |
|
|
|
|
|
# Brain MRI Synthesis with DDPM (64x64) |
|
|
|
|
|
This model is a diffusion-based model for unconditional image generation of **brain MRI FLAIR slices** of size **64x64 pixels**. |
|
|
The model was trained using the [DDPM](https://arxiv.org/abs/2006.11239) architecture, with attention mechanisms in the middle of the U-Net. |
|
|
It is trained from scratch on a dataset of brain MRI slices, specifically designed for generating synthetic brain images. |
|
|
|
|
|
## Training Details |
|
|
|
|
|
- **Architecture:** DDPM (Denoising Diffusion Probabilistic Model) |
|
|
- **Resolution:** 64x64 pixels |
|
|
- **Dataset:** Lesion2D VH splitted (FLAIR MRI slices) (70% of the dataset) |
|
|
- **Channels:** 1 (grayscale, FLAIR modality) |
|
|
- **Epochs:** 50 |
|
|
- **Batch size:** 32 |
|
|
- **Optimizer:** AdamW with learning rate of `1.0e-4` |
|
|
- **Scheduler:** Cosine with 500 warm-up steps |
|
|
- **Gradient Accumulation:** 1 steps |
|
|
- **Mixed Precision:** No |
|
|
- **Hardware:** Trained on **one NVIDIA GeForce GTX 1080 Ti GPU of 12GB** |
|
|
- **Memory Consumption:** Around **7 GB** during training |
|
|
|
|
|
## U-Net Architecture |
|
|
- **Down Blocks:** [DownBlock2D, DownBlock2D, AttnDownBlock2D, DownBlock2D] |
|
|
- **Up Blocks:** [UpBlock2D, AttnUpBlock2D, UpBlock2D] |
|
|
- **Layers per Block:** 2 |
|
|
- **Block Channels:** [128, 128, 256, 512] |
|
|
|
|
|
## Usage |
|
|
You can use the model directly with the `diffusers` library: |
|
|
|
|
|
```python |
|
|
from diffusers import DDPMPipeline |
|
|
import torch |
|
|
|
|
|
# Load the model |
|
|
pipeline = DDPMPipeline.from_pretrained("benetraco/brain_ddpm_64") |
|
|
pipeline.to("cuda") # or "cpu" |
|
|
|
|
|
# Generate an image |
|
|
image = pipeline(batch_size=1).images[0] |
|
|
|
|
|
# Display the image |
|
|
image.show() |
|
|
|