Add pipeline tag and update paper link

#3
by nielsr HF Staff - opened
Files changed (1) hide show
  1. README.md +7 -5
README.md CHANGED
@@ -1,15 +1,17 @@
1
  ---
2
  license: mit
 
3
  ---
4
 
5
- # BarcodeMamba for Taxonomic Classification
6
 
7
- A performant and efficient Mamba-2-based foundation model for DNA barcodes in biodiversity analysis.
8
 
9
- - Check out our [paper](https://openreview.net/forum?id=6ohFEFTr10)
 
10
  - Check out our [poster](https://neurips.cc/media/PosterPDFs/NeurIPS%202024/105938.png)
11
 
12
- # Usage
13
  The pretrained models can be used for both taxonomic classification on seen species (fine-tune & linear probe) and making genus-level predictions on unseen species (1-NN probe). The instructions for using our models can be found at our [GitHub repository](https://github.com/bioscan-ml/BarcodeMamba).
14
 
15
  # Citation
@@ -25,4 +27,4 @@ booktitle={{NeurIPS} 2024 Workshop on Foundation Models for Science: Progress, O
25
  year={2024},
26
  url={https://openreview.net/forum?id=6ohFEFTr10}
27
  }
28
- ```
 
1
  ---
2
  license: mit
3
+ pipeline_tag: text-classification
4
  ---
5
 
6
+ # BarcodeMamba+: Advancing State-Space Models for Fungal Biodiversity Research
7
 
8
+ BarcodeMamba+ is a foundation model for fungal barcode classification, built on a powerful and efficient state-space model architecture. It addresses critical challenges in fungal taxonomic classification, such as sparse labelling and long-tailed taxa distributions, by employing a pretrain and fine-tune paradigm. The model integrates various enhancements, including hierarchical label smoothing, a weighted loss function, and a multi-head output layer, to achieve significant performance gains over traditional supervised methods.
9
 
10
+ - Check out our [paper](https://huggingface.co/papers/2512.15931)
11
+ - Check out our [code](https://github.com/bioscan-ml/BarcodeMamba)
12
  - Check out our [poster](https://neurips.cc/media/PosterPDFs/NeurIPS%202024/105938.png)
13
 
14
+ # Usage
15
  The pretrained models can be used for both taxonomic classification on seen species (fine-tune & linear probe) and making genus-level predictions on unseen species (1-NN probe). The instructions for using our models can be found at our [GitHub repository](https://github.com/bioscan-ml/BarcodeMamba).
16
 
17
  # Citation
 
27
  year={2024},
28
  url={https://openreview.net/forum?id=6ohFEFTr10}
29
  }
30
+ ```