Add pipeline tag and update paper link
#3
by
nielsr
HF Staff
- opened
README.md
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license: mit
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---
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# BarcodeMamba for
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- Check out our [paper](https://
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- Check out our [poster](https://neurips.cc/media/PosterPDFs/NeurIPS%202024/105938.png)
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# Usage
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The pretrained models can be used for both taxonomic classification on seen species (fine-tune & linear probe) and making genus-level predictions on unseen species (1-NN probe). The instructions for using our models can be found at our [GitHub repository](https://github.com/bioscan-ml/BarcodeMamba).
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# Citation
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year={2024},
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url={https://openreview.net/forum?id=6ohFEFTr10}
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}
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```
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---
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license: mit
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pipeline_tag: text-classification
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---
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# BarcodeMamba+: Advancing State-Space Models for Fungal Biodiversity Research
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BarcodeMamba+ is a foundation model for fungal barcode classification, built on a powerful and efficient state-space model architecture. It addresses critical challenges in fungal taxonomic classification, such as sparse labelling and long-tailed taxa distributions, by employing a pretrain and fine-tune paradigm. The model integrates various enhancements, including hierarchical label smoothing, a weighted loss function, and a multi-head output layer, to achieve significant performance gains over traditional supervised methods.
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- Check out our [paper](https://huggingface.co/papers/2512.15931)
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- Check out our [code](https://github.com/bioscan-ml/BarcodeMamba)
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- Check out our [poster](https://neurips.cc/media/PosterPDFs/NeurIPS%202024/105938.png)
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# Usage
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The pretrained models can be used for both taxonomic classification on seen species (fine-tune & linear probe) and making genus-level predictions on unseen species (1-NN probe). The instructions for using our models can be found at our [GitHub repository](https://github.com/bioscan-ml/BarcodeMamba).
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# Citation
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year={2024},
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url={https://openreview.net/forum?id=6ohFEFTr10}
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}
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```
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