scripts/figures
figure builders for PAPER.tex + figures/PANDA_supplement.pdf. all figures load
from real artefacts under discovery/, checkpoints/, and the corpus files -- no
hardcoded numbers.
| script | output |
|---|---|
generate_paper_figures.py |
main-text figures 1-4 (per-class F1 bars, volcano, heatmap, stage stack) |
generate_umap.py |
Dingwall 2-panel UMAP (predicted class + genotype) |
generate_multi_umap.py |
3-panel cross-system UMAP (Dingwall + Dahlin + Veres) |
build_skin_corpus_umap.py |
full pan-skin training-corpus UMAP |
build_figure_supplement.py |
master builder for the multi-page supplement |
build_umaps_and_discovery.py |
per-target UMAPs + mechanistic-evidence panels |