Fix bug with metadata when processing multiple .loom files
#3
by
davidjwen
- opened
- geneformer/tokenizer.py +2 -1
geneformer/tokenizer.py
CHANGED
|
@@ -108,7 +108,8 @@ class TranscriptomeTokenizer:
|
|
| 108 |
loom_file_path
|
| 109 |
)
|
| 110 |
tokenized_cells += file_tokenized_cells
|
| 111 |
-
cell_metadata.
|
|
|
|
| 112 |
|
| 113 |
return tokenized_cells, cell_metadata
|
| 114 |
|
|
|
|
| 108 |
loom_file_path
|
| 109 |
)
|
| 110 |
tokenized_cells += file_tokenized_cells
|
| 111 |
+
for k in cell_metadata.keys():
|
| 112 |
+
cell_metadata[k] += file_cell_metadata[k]
|
| 113 |
|
| 114 |
return tokenized_cells, cell_metadata
|
| 115 |
|