Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Add function to get number of model embeddings
#364
by hchen725 - opened
geneformer/perturber_utils.py
CHANGED
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@@ -156,8 +156,12 @@ def quant_layers(model):
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return int(max(layer_nums)) + 1
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def get_model_input_size(model):
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return
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def flatten_list(megalist):
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return int(max(layer_nums)) + 1
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def get_model_emb_dims(model):
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return model.config.hidden_size
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def get_model_input_size(model):
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return model.config.max_position_embeddings
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def flatten_list(megalist):
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