Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Installation error
#474
by shakeel604 - opened
I was trying to install geneformer without lfs files with the command you mentioned
GIT_LFS_SKIP_SMUDGE=1 git clone https://huggingface.co/ctheodoris/Geneformer
Then cd Geneformer
then pip install .
But I get the below error
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (accumulation-tree)
Thank you for your question - if there is anything further in the error message, that may help to troubleshoot. Otherwise, perhaps try to pip install accumulation-tree separately.
ctheodoris changed discussion status to closed
Thank the error was related to compiler
Solution: export CFLAGS="-std=c99"