Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Update geneformer/perturber_utils.py to be compatible with different versions of the datasets package.
#553
by IchigoJiken - opened
'Column' object has no attribute 'to' error from evaluation_utils.py in Geneformer_tutorial.ipynb #551
Thank you for your contribution in resolving this!
ctheodoris changed pull request status to merged