Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Fix TypeError in make_perturbation_batch_special
#567
by so298 - opened
Summary:
make_perturbation_batch_special failed with
TypeError: unsupported operand type(s) for *: 'Column' and 'int'
because example_cell["input_ids"] was a Hugging Face Column.
This is a bug for datasets>=4.0.0
Fix:
Convert example_cell to a Python dict (same as in make_perturbation_batch) and explicitly build the repeated input list instead of multiplying the column.
Thank you so much for your contribution to resolve this!
ctheodoris changed pull request status to merged