Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Update geneformer/mtl/train.py
#582
by MajorasMeow - opened
Added changes from line 478 to 497 as proposed in /Geneformer/discussions/581 to debug max_layers_to_freeze settings being ignored.
Now user values for max_layers_to_freeze are accepted for optuna.
Thank you for your contribution!
ctheodoris changed pull request status to merged