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Geneformer

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Geneformer / examples

3.75 MB

19 contributors

History: 7 commits

Christina Theodoris

Add example input labels for distinguishing bivalent promoters.

996d3e5 over 2 years ago

example_input_files
Add example input labels for distinguishing bivalent promoters. over 2 years ago
cell_classification.ipynb

95.8 kB

Add data collator for gene classification and example for gene classification about 3 years ago
gene_classification.ipynb

167 kB

Add data collator for gene classification and example for gene classification about 3 years ago
hyperparam_optimiz_for_disease_classifier.py

6.77 kB

Add example for hyperparameter optimization for disease classifier over 2 years ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 2 years ago
pretrain_geneformer_w_deepspeed.py

5 kB

Add data collator for cell classification and example for cell classification about 3 years ago