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ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community
585

Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use ctheodoris/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
  • Inference
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / examples /example_input_files
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  • 20 contributors
History: 2 commits
Christina Theodoris
Add example input labels for distinguishing bivalent promoters.
996d3e5 almost 3 years ago
  • bivalent_promoters
    Add example input labels for distinguishing bivalent promoters. almost 3 years ago
  • dosage_sensitive_tfs
    Add example input labels for distinguishing bivalent promoters. almost 3 years ago
  • gene_info_table.csv
    3.46 MB
    Add example input files for gene classification of TF dosage sensitivity almost 3 years ago