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ctheodoris
/
Geneformer
like
293
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
Model card
Files
Files and versions
xet
Community
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refs/pr/345
Geneformer
/
geneformer
3.16 MB
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20 contributors
History:
81 commits
ctheodoris
reinstate save_to_disk patch
344f263
verified
almost 2 years ago
__init__.py
656 Bytes
added quality of life improvements; fixed gene similarities with cell_states_to_model
almost 2 years ago
classifier.py
60.7 kB
patch datasets save_to_disk
almost 2 years ago
classifier_utils.py
16.7 kB
Update for gene classification (#330)
about 2 years ago
collator_for_classification.py
Safe
29.8 kB
Subclass collator for cell classification
almost 3 years ago
emb_extractor.py
29.3 kB
Add classifier module and examples
about 2 years ago
evaluation_utils.py
9.76 kB
update examples for predict_eval and handle roc for 2 cell classes
about 2 years ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
over 3 years ago
gene_name_id_dict.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
1.12 MB
xet
Upload gene_name_id_dict.pkl (#14)
almost 3 years ago
in_silico_perturber.py
38.9 kB
added quality of life improvements; fixed gene similarities with cell_states_to_model
almost 2 years ago
in_silico_perturber_stats.py
43.2 kB
Add classifier module and examples
about 2 years ago
perturber_utils.py
26.9 kB
added quality of life improvements; fixed gene similarities with cell_states_to_model
almost 2 years ago
pretrainer.py
37.1 kB
update kwargs for pretrainer
about 2 years ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
How to fix it?
788 kB
Update token_dictionary.pkl
about 3 years ago
tokenizer.py
16.5 kB
reinstate save_to_disk patch
almost 2 years ago