Hugging Face
Models
Datasets
Spaces
Community
Docs
Enterprise
Pricing
Log In
Sign Up
ctheodoris
/
Geneformer
like
266
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
Model card
Files
Files and versions
xet
Community
575
Deploy
Use this model
refs/pr/541
Geneformer
1.58 GB
19 contributors
History:
215 commits
jackkuo
fix AssertionError: First token is not <cls> token value in extract_and_plot_cell_embeddings.ipynb
e4162f9
7 months ago
docs
move dict loading to function in eval utils
over 1 year ago
examples
fix AssertionError: First token is not <cls> token value in extract_and_plot_cell_embeddings.ipynb
7 months ago
fine_tuned_models
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
geneformer
fix TypeError: TrainingArguments.__init__() got an unexpected keyword argument 'evaluation_strategy' (#539)
7 months ago
gf-12L-30M-i2048
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
gf-12L-95M-i4096
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
gf-12L-95M-i4096_CLcancer
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
gf-20L-95M-i4096
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
gf-6L-30M-i2048
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
.gitattributes
Safe
1.27 kB
precommit formatting
over 1 year ago
.gitignore
3.08 kB
Add gitignore file
over 2 years ago
.pre-commit-config.yaml
Safe
737 Bytes
Add pre-commit config
about 2 years ago
.readthedocs.yaml
Safe
396 Bytes
update readthedocs.yaml
almost 2 years ago
MANIFEST.in
Safe
195 Bytes
update setup with req and manifest with updated filenames
over 1 year ago
README.md
Safe
8.46 kB
Adding tags to the model (#448)
about 1 year ago
config.json
Safe
591 Bytes
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
generation_config.json
Safe
90 Bytes
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
model.safetensors
Safe
152 MB
xet
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
requirements.txt
Safe
362 Bytes
update transformers version to match pretrainer using accelerate
about 1 year ago
setup.py
Safe
1.06 kB
Add find_packages to automatically include mtl and subpackages in setup.py (#410)
over 1 year ago
training_args.bin
pickle
Detected Pickle imports (8)
"transformers.trainer_utils.SchedulerType"
,
"transformers.training_args.OptimizerNames"
,
"accelerate.utils.dataclasses.DistributedType"
,
"transformers.trainer_utils.HubStrategy"
,
"torch.device"
,
"transformers.trainer_utils.IntervalStrategy"
,
"transformers.training_args.TrainingArguments"
,
"accelerate.state.PartialState"
How to fix it?
4.92 kB
xet
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
over 1 year ago
