ctheodoris/Geneformer at refs/pr/560

Geneformer

3.58 GB

19 contributors

History: 235 commits

jo-mengr

add support for zarr when loading adata objects for tokenizer. Load with anndata.read_zarr().

31c6d20 4 months ago

Geneformer-V1-10M
add V2 models 7 months ago
Geneformer-V2-104M
add V2 models 7 months ago
Geneformer-V2-104M_CLcancer
add V2 models 7 months ago
Geneformer-V2-316M
add V2 models 7 months ago
docs
edit docs to remove backend isp functions 7 months ago
examples
delete first version of dist multitask example 6 months ago
fine_tuned_models
add V2 models 7 months ago
geneformer
add support for zarr when loading adata objects for tokenizer. Load with anndata.read_zarr(). 4 months ago
.gitattributes

1.27 kB

precommit formatting over 1 year ago
.gitignore

3.08 kB

Add gitignore file over 2 years ago
.pre-commit-config.yaml

737 Bytes

Add pre-commit config about 2 years ago
.readthedocs.yaml

396 Bytes

update readthedocs.yaml almost 2 years ago
MANIFEST.in

482 Bytes

add option for relabeling data from prior label class dict, update dict paths in manifest 6 months ago
README.md

9.06 kB

Update README.md 6 months ago
config.json

591 Bytes

update with V2 models 7 months ago
generation_config.json

90 Bytes

update with V2 models 7 months ago
model.safetensors

1.27 GB
xet

update with V2 models 7 months ago
requirements.txt

382 Bytes

specify bitsandbites version 7 months ago
setup.py

1.09 kB

update with V2 models 7 months ago
training_args.bin
Detected Pickle imports (9)
- "transformers.trainer_utils.IntervalStrategy",
- "accelerate.state.PartialState",
- "transformers.training_args.TrainingArguments",
- "transformers.trainer_utils.SchedulerType",
- "accelerate.utils.dataclasses.DistributedType",
- "transformers.training_args.OptimizerNames",
- "transformers.trainer_utils.HubStrategy",
- "transformers.trainer_pt_utils.AcceleratorConfig",
- "torch.device"
How to fix it?
5.43 kB
xet

update with V2 models 7 months ago

Detected Pickle imports (9)