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biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12822238&blobtype=pdf
# Integrated Genomic and Epidemiological Surveillance to Monitor SARS-CoV-2 Variants in Italy: Insights From the JN.1 Case Study (2023-2024) Mattia Manica, Emanuela Giombini, Martina Manso, Carla Grané, | Luigina, Antonino Bella, Angela Di Martino, Daniele Petrone, Flavia Riccardo, Piero Poletti, | Patrizio Pezzotti, ...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12791422&blobtype=pdf
# P-748. Chronic wounds and xylazine exposure among people who use drugs in Baltimore and Washington, DC: prevalence, preferences, and testing methods Edward Traver, ; Onyinyechi Ogbumbadiugha-Weekes, Meredith Zoltick, Claire Tindula, Dnp, Fnp-C, Tina Liu, Sabina Ghale, Meghan Derenoncourt, Miriam Jones, Ashley Davis,...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12678195&blobtype=pdf
# Retraction RETRACTION: Expression of Factor X in BHK-21 Cells Promotes Low Pathogenic Influenza Viruses Replication Advances in Virology Te retraction has been agreed following an investigation of the concerns raised by Actinopolyspora biskrensis on PubPeer [1], which identifed several concerns related to Figure 3. ...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12855665&blobtype=pdf
# Clinical Phenotypes of Critically Ill Patients with COVID-19 Infected with Omicron: A Nationwide Prospective Cohort Study Etienne Audureau, Pierre Bay, Sébastien Préau, Raphaël Favory, Aurélie Guigon, Nicholas Heming, Elyanne Gault, Tài Pham, Amal Chaghouri, Matthieu Turpin, Laurence Morand-Joubert, Sébastien Jochma...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12798009&blobtype=pdf
# Isolation and complete genome sequence analysis of an Echovirus 29 strain isolated from a patient of Acute Flaccid Paralysis in India Madhuri Joshi, Rishabh Waghchaure, Pooja Umare, Abhijeet Jadhav, Alfia Ashraf, Sarah Cherian, Naveen Kumar, Babasaheb Tandale, Mallika Lavania, John Dennehy ## Abstract Echovirus 29...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12841584&blobtype=pdf
# Special Issue "Viral Infections: Physiology, Pathophysiology, Pathogenesis, Diagnosis and Treatment" Barbara Bażanów, Dominika Stygar ## Abstract Viral infections remain one of the most significant challenges to global health, affecting humans and animals alike and posing continuous threats due to their high trans...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12791326&blobtype=pdf
# P-319. Discordance Between Objective and Perceived Risk for Contracting HIV and Association with PrEP Engagement in Transgender Individuals Meghan Anderson, Meredith Zoltick, Rahwa Eyasu, Emade Ebah, Phyllis Bijole, Miriam Jones, Dorcas Salifu, ; Habib Omari, Ashley Davis, Sarah Kattakuzhy, Elana Rosenthal Fisher's...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12846782&blobtype=pdf
# David Baltimore: Scientist, leader, and mentor Nancy Andrews, George Daley ## Abstract Fifty years ago, at the remarkably young age of 37, David Baltimore received the Nobel Prize (with Howard Temin and Renato Dulbecco) for "discoveries concerning the interaction between tumor viruses and the genetic material of t...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12809952&blobtype=pdf
# Mallika Lavania and Pooja Umare contributed equally as first author Mallika Lavania, Pooja Umare, Rishabh Waghchaure, Manoj Vedpathak, Rajlakshmi Vishwanathan, Pradnya Shinde, Upendra Singh Maholiya, Yash Kokarde, Prathamesh Bagewadi, Vijaykumar Chincholkar, Babasaheb Tandale, Naveen Kumar ## Abstract Norovirus (N...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12797970&blobtype=pdf
# Complete genome sequences of two Cressdnaviricota viruses identified in respiratory tract samples from forest musk deer in China Qing Zhang, Xiaojie Jiang, Yuan Xi, Xiao Ma, Wen Zhang ## Abstract We identified two circular single-stranded DNA viruses from forest musk deer in China through metagenomic analysis. Phy...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12697126&blobtype=pdf
# Announcement of two complete coding genomes of mink coronavirus and one partial coding genome of mink enteric calicivirus from mink in Denmark Christina Lazov, Lars Larsen, Camille Johnston, Thomas Rasmussen, Charlotte Hjulsager ## Abstract Two complete coding genomes of mink coronavirus and one partial coding gen...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12798054&blobtype=pdf
# Genome sequences of human coronavirus NL63 diagnosed in southern France Houmadi Hikmat, Céline Boschi, Sarah Aherfi, Aurélie Morand, Bernard Scola, Philippe Colson ## Abstract We report here 17 human coronavirus NL63 genomes from France. They were obtained from residues of respiratory samples collected from patien...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12724320&blobtype=pdf
# Oral VV261 administration protects mice from lethal Crimean-Congo hemorrhagic fever virus challenge Xi Wang, Huan Xu, Liushuai Li, Fan Wu, Jiang Li, Jingshan Shen, Gengfu Xiao, Wei Zheng, Leike Zhang, Zhihong Hu, Manli Wang ## Abstract KEYWORDS Crimean-Congo hemorrhagic fever virus, nucleoside analog, VV261, oral ...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12697143&blobtype=pdf
# Isolation and near-complete genome of human enterovirus B4 (Coxsackie virus B4) strain isolated from a nasopharyngeal swab of a 5-year-old male child with severe hand, foot, and mouth disease in Mizoram, India Basavaraj Mathapati, Swagnik Roy, Vikas Sharma, Mallika Lavania, Souvik Mitra, Lalremruata Chenhrang, Dines...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12548107&blobtype=pdf
# BMC Medical Education Vincent Sulla, Vincent Portet Sulla, Stephane Marot, Marion Dutkiewicz, Valentine Berti, Anaïs Grimal, Théo Ghelfenstein-Ferreira, Morgane Solis, Caroline Charre, Maud Salmona, Vincent Thibault, Charlotte Pronier, Nicolas Pineros, Mathilde Lescat, Juliette Besombes, Christelle Vauloup-Fellous ...
biology
europe-pmc
https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC12697099&blobtype=pdf
# Characterization of near-complete hepatitis E virus genomes of genotype 1e and 4b detected from humans in Cameroon Abdou Modiyinji, Pierre Cappy, Arnaud Ly, Aristide Mounchili-Njifon, Moise Henri, Yifomnjou Moumbeket, Huguette Simo, Abanda Ngu, Richard Njouom ## Abstract Hepatitis E virus (HEV) is an important pub...
End of preview. Expand in Data Studio

Dual-Use Papers

A curated collection of academic papers converted to markdown, labeled by subject-matter category. Built for research on dual-use capabilities in LLMs.

Schema

Column Type Description
category string Topic label (see mapping below)
source string Provenance tag, e.g. europe-pmc, arxiv_cs.CR, osti
url string URL to the original PDF
text string Full paper text in markdown format

Category Mapping

Source Category
Europe PMC biology
OSTI nuclear
arXiv nucl-th, nucl-ex nuclear
arXiv cs.CR, cs.NI, cs.OS cyber
arXiv (all other categories) other

Statistics

Total rows: 415,536

Category Rows
biology 192,461
cyber 49,810
nuclear 79,706
other 93,559
Source Rows
europe-pmc 192,461
osti 32,316
arXiv (cyber) 49,810
arXiv (nuclear) 47,390
arXiv (other) 93,559

Sources

  • Europe PMC — Open-access biomedical and life-science literature from europepmc.org.
  • arXiv — Preprints across physics, mathematics, computer science, and more from arxiv.org. Dual-use categories (cyber, nuclear) are collected exhaustively from 1991 to the present. Other categories are sampled and balanced to match the dual-use count.
  • OSTI — Technical reports and journal articles from the U.S. Department of Energy's Office of Scientific and Technical Information.

Processing

  1. Metadata is collected via source-specific APIs (arXiv, Europe PMC, OSTI).
  2. PDFs are downloaded and converted to markdown using GROBID.
  3. arXiv "other" papers are shuffled and truncated so their count exactly matches the number of dual-use arXiv papers.

Usage

from datasets import load_dataset

ds = load_dataset("AE-data/dual-use-papers", split="train")
print(ds)
print(ds[0]["category"], ds[0]["text"][:200])

Note

This dataset is intended solely for safety and scientific research purposes.

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