repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
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amuse | amuse-main/examples/applications/iliev_test5.py | """
Radiative transfer comparison test 5 (Iliev et al 2009).
This example demonstrates the coupling of a radiative transfer code to
a hydrodynamics code to do radiative hydrodynamic
problems. Specifically it calculates the Iliev radiative trasnfer
comparison project test 5 (expanding HII region in homogeneous medium)... | 9,751 | 25.791209 | 79 | py |
amuse | amuse-main/examples/applications/test_evrard_collapse.py | import sys
import os.path
from optparse import OptionParser
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
from amuse.plot import plot, xlabel, ylabel
except ImportError:
HAS_MATPLOTLIB = False
from amuse.test.amusetest import get_path_to_results
from amuse.units import units
from amuse.unit... | 7,936 | 27.448029 | 83 | py |
amuse | amuse-main/examples/applications/test_molecular_cloud.py | import os
import numpy
from amuse.community.fi import interface as interface
from amuse.ext.evrard_test import regular_grid_unit_cube
from amuse.ext.molecular_cloud import molecular_cloud
from amuse.test.amusetest import get_path_to_results
from amuse.rfi.core import is_mpd_running
try:
from matplotlib import pyp... | 2,493 | 23.213592 | 74 | py |
amuse | amuse-main/examples/applications/test_plummer_sphere_on_grid.py | """
In this script we simulate a plummer sphere on a grid
"""
from amuse.units import constants
from amuse.units import units
from amuse.units import nbody_system
from amuse.units.generic_unit_system import (
time, length, speed, mass, density,
)
from amuse.units.generic_unit_converter import (
... | 18,609 | 33.720149 | 115 | py |
amuse | amuse-main/examples/applications/test_HRdiagram_tracks.py | import sys
import os
import warnings
from optparse import OptionParser
from amuse.units import units
from amuse.community.sse.interface import SSE
from amuse.community.evtwin.interface import EVtwin
from amuse.community.evtwin2sse.interface import EVtwin2SSE
from amuse.community.mesa.interface import MESA
from amuse... | 11,883 | 36.021807 | 121 | py |
amuse | amuse-main/examples/applications/mercury_solarsystem3.py | # import numpy
from amuse.community.mercury.interface import MercuryWayWard
from amuse.community.sse.interface import SSE
from amuse.ext.solarsystem import new_solar_system_for_mercury
from amuse.units import units
from amuse.units.quantities import VectorQuantity
from amuse.plot import (
plot, native_plot,
... | 1,944 | 26.394366 | 62 | py |
amuse | amuse-main/examples/applications/test_supernova.py | import os.path
import numpy
from amuse.test.amusetest import get_path_to_results
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
from amuse.plot import plot, xlabel, ylabel
except ImportError:
HAS_MATPLOTLIB = False
from amuse.units import units
# from amuse.units import generic_unit_system
# ... | 8,418 | 34.37395 | 89 | py |
amuse | amuse-main/examples/applications/test_HRdiagram_cluster.py | import numpy
import os
import warnings
from optparse import OptionParser
from amuse.units import units
from amuse.community.sse.interface import SSE
from amuse.community.evtwin.interface import EVtwin
from amuse.community.mesa.interface import MESA
from amuse.community.cachedse.interface import CachedStellarEvolution... | 7,013 | 28.225 | 109 | py |
amuse | amuse-main/examples/applications/test_riemann_shock_tube_problem.py | """
In this script we simulate the riemann shock tube problem in 3d.
.. quote:
The test set-up consists of two fluids of different densities and pressures
separated by a membrane that is then removed. The resulting solution shows
all three types of fluid discontinuties; a shock wave moving from the high
... | 16,622 | 32.246 | 126 | py |
amuse | amuse-main/examples/applications/vader_ring.py | import numpy as np
import matplotlib.pyplot as plt
import scipy.constants as physcons
from scipy.special import ive
from amuse.units import units
from amuse.community.vader.interface import Vader
kB = physcons.k*1e7 | units.erg/units.K
mH = 1e3*physcons.physical_constants['atomic mass constant'][0]*1.00794 | units.g... | 4,473 | 28.434211 | 84 | py |
amuse | amuse-main/examples/applications/mercury_solarsystem4.py | import numpy
from amuse.community.mercury.interface import MercuryWayWard
from amuse.community.sse.interface import SSE
from amuse.ext.solarsystem import new_solar_system_for_mercury
from amuse.units import units
# from amuse.units.quantities import VectorQuantity
from amuse.plot import (
plot, native_plot, pl... | 3,567 | 25.827068 | 62 | py |
amuse | amuse-main/examples/applications/linear_wave.py | """
In this script we simulate a 1d linear wave in a 2d field
"""
import numpy
# from amuse.support.core import late
# from amuse.units.quantities import VectorQuantity
from amuse.units.generic_unit_system import (
time, length, speed, mass, density
)
from amuse.community.capreole.interface import Cap... | 9,855 | 32.753425 | 77 | py |
amuse | amuse-main/examples/applications/cloudshock.py | import numpy
try:
from matplotlib import pyplot
IS_PLOT_AVAILABLE = True
except ImportError:
IS_PLOT_AVAILABLE = False
from amuse.ext import cloud
from amuse.units import generic_unit_system
from amuse.community.capreole.interface import Capreole
from amuse import io
from amuse import datamodel
class C... | 7,222 | 31.102222 | 93 | py |
amuse | amuse-main/examples/applications/mercury_example.py |
import numpy
from amuse.community.mercury.interface import MercuryInterface
try:
# from amuse import plot
from matplotlib import pyplot
HAS_MATPLOTLIB = True
IS_PLOT_AVAILABLE = True
except ImportError:
HAS_MATPLOTLIB = False
IS_PLOT_AVAILABLE = False
# from amuse.support.core import late
# ... | 7,777 | 29.147287 | 76 | py |
amuse | amuse-main/examples/applications/christmas_card_2010.py | import os.path
from amuse.test.amusetest import get_path_to_results
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
# from amuse.plot import plot, semilogy, xlabel, ylabel, loglog
except ImportError:
HAS_MATPLOTLIB = False
from amuse.units import units
from amuse.units import constants
from am... | 8,724 | 37.436123 | 124 | py |
amuse | amuse-main/examples/applications/vader_ringrad.py | import numpy as np
import matplotlib.pyplot as plt
import scipy.constants as physcons
from scipy.special import ive
from amuse.units import units
from amuse.community.vader.interface import Vader
kB = physcons.k*1e7 | units.erg/units.K
mH = 1e3*physcons.physical_constants['atomic mass constant'][0]*1.00794 | units.g... | 4,443 | 29.231293 | 84 | py |
amuse | amuse-main/examples/applications/kelvin_helmholtz.py | """
In this script we simulate Kelvin-Helmholtz Instability in 3d.
"""
import numpy
# from amuse.support.core import late
# from amuse.units.quantities import VectorQuantity
from amuse.units.generic_unit_system import (
time, length, mass, speed, density
)
from amuse.community.capreole.interface impor... | 6,921 | 29.493392 | 76 | py |
amuse | amuse-main/examples/applications/asterisk_example.py | import numpy.random
from amuse.units import units, nbody_system
from amuse.ic.flatimf import new_flat_mass_distribution
from amuse.ic.plummer import new_plummer_model
from amuse.ext.particles_with_color import new_particles_with_blackbody_color
from amuse.community.seba.interface import SeBa
from amuse.community.bhtre... | 3,433 | 35.531915 | 77 | py |
amuse | amuse-main/examples/applications/asterisk_movie_example.py | # import time
import numpy.random
from amuse.ic.flatimf import new_flat_mass_distribution
from amuse.ic.plummer import new_plummer_model
from amuse.units import nbody_system as nbody
# from amuse.community.asterisk.interface import AsteriskInterface
from amuse.community.asterisk.interface import Asterisk
# from matpl... | 3,988 | 35.935185 | 84 | py |
amuse | amuse-main/examples/applications/distributed_sunandearth.py | """
Example of usage of the distributed code based on the 'sunandearth' simple
example.
Evolves the dynamic evolution of the earth around the sun.
"""
from amuse.units import nbody_system
from amuse.units import units
from amuse.units import quantities
from amuse.community.hermite.interface import Hermite
from amuse... | 3,754 | 24.371622 | 78 | py |
amuse | amuse-main/examples/applications/linear_wave_boundaries.py | """
In this script we simulate a 1d linear wave in a 2d field,
the periodic boundaries are not handled in the code but by amuse
(much slower at time of writing)
"""
import numpy
# from amuse.support.core import late
# from amuse.units.quantities import VectorQuantity
from amuse.units.generic_unit_system import (
... | 15,714 | 33.922222 | 104 | py |
amuse | amuse-main/examples/applications/vader_selfsim.py | import numpy as np
import matplotlib.pyplot as plt
import scipy.constants as physcons
from amuse.units import units
from amuse.community.vader.interface import Vader
kB = physcons.k*1e7 | units.erg/units.K
mH = 1e3*physcons.physical_constants['atomic mass constant'][0]*1.00794 | units.g
mu = 2.33
def setup_vader (... | 3,889 | 26.202797 | 260 | py |
amuse | amuse-main/examples/applications/linear_wave_parts_live.py | """
In this script we simulate a 1d linear wave in a 2d field,
the periodic boundaries are not handled in the code but by amuse
(much slower at time of writing)
"""
import sys
import numpy
# import math
# from amuse.support.core import late
# from amuse.units.quantities import VectorQuantity
from amuse.units.generic_u... | 29,043 | 35.350438 | 125 | py |
amuse | amuse-main/examples/applications/galaxy_merger.py | """
Simple Galaxy Merger
example simulating a merger of two Milky Way-type galaxies, collisionless
particles (i.e. no gas)
"""
import os
import os.path
import numpy
from amuse.units import nbody_system, units
from amuse.datamodel import Particles
from amuse.io import read_set_from_file, write_set_to_file
from amuse.... | 3,960 | 31.735537 | 79 | py |
amuse | amuse-main/examples/applications/__init__.py | 0 | 0 | 0 | py | |
amuse | amuse-main/examples/applications/test_jeans_instability.py | from amuse.community.athena.interface import Athena
from amuse.units import generic_unit_converter
# from amuse.units import generic_unit_system
from amuse.units import units
from amuse.units import constants
from amuse.test import amusetest
import numpy
try:
from amuse import plot
from matplotlib import pypl... | 10,206 | 31.403175 | 79 | py |
amuse | amuse-main/examples/applications/mercury_solarsystem.py | # import numpy
from amuse.community.mercury.interface import MercuryInterface
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
except ImportError:
HAS_MATPLOTLIB = False
solarsystem = [
[
'MERCURY', 1.66013679527193009E-07, 20., 5.43,
-3.8396601741917596... | 5,147 | 34.020408 | 77 | py |
amuse | amuse-main/examples/applications/test_blender.py | # 1BPY
"""
Name: 'sun-earth'
Blender: 249
Group:'Add'
Tooltip: 'Amuse example'
"""
from amuse.community.hermite.interface import Hermite
from amuse.units import nbody_system
from amuse.units import units
from amuse.ext.blender import blender # get blender API
import numpy as np
from amuse import datamodel
class Su... | 2,202 | 29.597222 | 79 | py |
amuse | amuse-main/examples/applications/test_evrard.py | import os
# import sys
import numpy
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
except ImportError:
HAS_MATPLOTLIB = False
from amuse.community.fi import interface as interface
from amuse.ext.evrard_test import MakeEvrardTest
# from amuse.ext.evrard_test import regular_grid_unit_cube
# from a... | 2,538 | 22.95283 | 70 | py |
amuse | amuse-main/examples/applications/imperial.py | from amuse.units.units import (
kg, m, s, N, named
)
pound = named('avoirdupois pound', 'lbm', 0.45359237 * kg)
g = 9.80665 * m / s**2
poundforce = named('poundforce', 'lbf', pound*g)
print(poundforce.as_quantity_in(N))
feet = named('feet', 'feet', 1/3.2808399 * m)
print(g.value_in(feet/s**2))
print(p... | 404 | 27.928571 | 58 | py |
amuse | amuse-main/examples/applications/test_triple_statistics.py | """
In this script we simulate triple evolution.
See papers:
http://arxiv.org/abs/1004.2506
and
http://arxiv.org/abs/1101.0399
"""
import numpy
import sys
# import time
from amuse.units import nbody_system, units
from amuse.units.quantities import AdaptingVectorQuantity
from amuse.datamodel import Particles
from amu... | 8,115 | 29.977099 | 79 | py |
amuse | amuse-main/examples/applications/test_smallcluster_async.py | import sys
# import unittest
import numpy
# import random
# import collections
import os
import threading
import time
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
except ImportError:
HAS_MATPLOTLIB = False
from amuse.units import nbody_system
from amuse.units import units
from amuse.io import... | 7,593 | 32.307018 | 82 | py |
amuse | amuse-main/examples/applications/test_smallcluster.py | import sys
# import unittest
import numpy
# import random
# import collections
import os
try:
from matplotlib import pyplot
HAS_MATPLOTLIB = True
except ImportError:
HAS_MATPLOTLIB = False
from amuse.units import nbody_system
from amuse.units import units
# from amuse.community.hermite.interface import H... | 6,750 | 32.755 | 82 | py |
amuse | amuse-main/examples/applications/distributed_nosetests.py | #!/usr/bin/python
import nose
from amuse.units import units
from amuse.community.distributed.interface import (
# DistributedAmuseInterface,
DistributedAmuse,
)
from amuse.community.distributed.interface import (
# Resource,
# Resources,
Pilot,
# Pilots,
... | 1,495 | 23.129032 | 76 | py |
amuse | amuse-main/examples/syllabus/hydro_sink_particles.py | from amuse.lab import *
def hydro_sink_particles(sinks, bodies):
all_lost_particles = Particles()
for s in sinks:
xs,ys,zs=s.x,s.y,s.z
radius_squared = s.radius**2
insink=bodies.select_array(lambda x,y,z: (x-xs)**2+(y-ys)**2+(z-zs)**2 < radius_squared,['x','y','z'])
if len(ins... | 2,124 | 37.636364 | 112 | py |
amuse | amuse-main/examples/syllabus/add_function_to_particleset.py | from amuse.lab import *
def function(body):
return 0.2*body[0].mass
bodies = Particles(1)
bodies.mass = 1|units.MSun
bodies.add_global_function_attribute("new_function", function)
print(bodies.new_function().in_(units.MSun))
| 231 | 22.2 | 62 | py |
amuse | amuse-main/examples/syllabus/plot_salpeter.py | """
Example AMUSE sciprt for plotting the Salpeter mass function
"""
import numpy
from matplotlib import pyplot
from amuse.lab import new_salpeter_mass_distribution, units
def main(N, m, M, ximf):
masses = new_salpeter_mass_distribution(N, m, M, ximf)
lm = numpy.log10(m.value_in(units.MSun))
lM = numpy... | 1,803 | 36.583333 | 92 | py |
amuse | amuse-main/examples/syllabus/gravity_stellar_collision.py | """
Nbody integration of N particles with a Salpeter initial mass
function between Mmin and Mmax and with stellar evolution with
metalicity z.
"""
from __future__ import print_function
from amuse.lab import *
from amuse.io import store
from amuse.community.seba.interface import SeBa
def merge_two_stars(bodies... | 5,904 | 43.067164 | 136 | py |
amuse | amuse-main/examples/syllabus/three_body_bridge.py | from __future__ import print_function
import numpy
from amuse.lab import *
from amuse.couple import bridge
def new_system_of_sun_and_earth():
stars = Particles(3)
sun = stars[0]
sun.mass = units.MSun(1.0)
sun.position = units.m(numpy.array((0.0,0.0,0.0)))
sun.velocity = units.ms(numpy.array((0.0,0... | 2,759 | 31.857143 | 82 | py |
amuse | amuse-main/examples/syllabus/core_temperature_density.py | from amuse.lab import *
Second_Asymptotic_Giant_Branch = 6 | units.stellar_type
HeWhiteDwarf = 10 | units.stellar_type
def stellar_remnant(stellar):
remnant = True
if stellar.particles[0].stellar_type<HeWhiteDwarf or stellar.particles[0].stellar_type>11|units.stellar_type:
remnant = False
retu... | 1,554 | 36.02381 | 113 | py |
amuse | amuse-main/examples/syllabus/sun_venus_earth.py | """
Example AMUSE script for evolving Venus and Earth around the Sun.
Syllabus List. 2.1 and 2.2
"""
from amuse.lab import Particles, units
def sun_venus_and_earth():
particles = Particles(3)
sun = particles[0]
sun.mass = 1.0 | units.MSun
sun.position = (0.0,0.0,0.0) | units.m
sun.velocity =... | 2,493 | 31.815789 | 98 | py |
amuse | amuse-main/examples/syllabus/two_body_bridge.py | from __future__ import print_function
import numpy
from amuse.lab import *
from amuse.couple import bridge
def new_system_of_sun_and_earth():
stars = Particles(2)
sun = stars[0]
sun.mass = units.MSun(1.0)
sun.position = units.m(numpy.array((0.0,0.0,0.0)))
sun.velocity = units.ms(numpy.array((0.0,0... | 2,232 | 29.175676 | 82 | py |
amuse | amuse-main/examples/syllabus/binary_evolution_example.py | """
Generates a grid of binaries with different, primary mass, mass ratio
and separation and evolves these over time.
"""
from amuse.units import units
from amuse.units import quantities
from amuse import datamodel
from amuse.community.seba.interface import SeBa
from matplotlib import pyplot
import numpy
import time
... | 3,283 | 35.488889 | 87 | py |
amuse | amuse-main/examples/syllabus/hydro_outflow_particles.py | import numpy
from amuse.lab import *
from amuse import datamodel
from amuse.ext.evrard_test import uniform_unit_sphere
set_printing_strategy("custom", #nbody_converter = converter,
preferred_units = [units.MSun, units.AU, units.Myr],
precision = 5, prefix = "", separator =... | 3,715 | 34.390476 | 89 | py |
amuse | amuse-main/examples/syllabus/plot_plummer.py | """
Example AMUSE sciprt for generating a Plummer shere and plot the results.
"""
from matplotlib.pyplot import show, xlim, ylim, figure
from amuse.plot import scatter, xlabel, ylabel
from amuse.lab import new_plummer_model
def main(N=10):
figure(figsize=(5,5))
bodies = new_plummer_model(N)
scatter(bo... | 741 | 26.481481 | 95 | py |
amuse | amuse-main/examples/syllabus/gravity_kepler_disks.py | from __future__ import print_function
from amuse.lab import *
#from amuse.io import store
#from amuse.community.seba.interface import SeBa
from amuse.community.fractalcluster.interface import new_fractal_cluster_model
def resolve_close_encounter(time, bodies, Johannes):
Johannes.initialize_from_particles(bodies)
... | 6,086 | 39.046053 | 252 | py |
amuse | amuse-main/examples/syllabus/star_to_hydro.py | """
Convert a 1D Henhey stellar model into a spherical particle distribution
"""
from amuse.units import units
from amuse.community.evtwin.interface import EVtwin
from amuse.ext.star_to_sph import convert_stellar_model_to_SPH
from amuse.plot import sph_particles_plot, native_plot
from amuse.datamodel import Particle
d... | 901 | 33.692308 | 78 | py |
amuse | amuse-main/examples/syllabus/rad_minimal.py | """
Minimalistic routine for running a radiative transfer code.
"""
from __future__ import print_function
from amuse.lab import *
def main(N=1000, Lstar=100|units.LSun, boxsize=10|units.parsec,
rho=1.0 | (units.amu/units.cm**3), t_end=0.1 |units.Myr):
internal_energy = (9. |units.kms)**2
source=... | 2,224 | 35.47541 | 70 | py |
amuse | amuse-main/examples/syllabus/rad_simple.py | from __future__ import print_function
from amuse.lab import *
from amuse.ext.molecular_cloud import ism_cube
from amuse.ext.protodisk import ProtoPlanetaryDisk
from amuse.community.simplex.interface import SimpleXInterface, SimpleX,SimpleXSplitSet
def new_disk_with_bump(Mstar = 1|units.MSun,
Ndi... | 4,649 | 38.07563 | 93 | py |
amuse | amuse-main/examples/syllabus/three_body_bridge_hierarchical.py | from __future__ import print_function
import numpy
from amuse.lab import *
from amuse.couple import bridge
def new_system_of_sun_and_earth():
stars = Particles(3)
sun = stars[0]
sun.mass = units.MSun(1.0)
sun.position = units.m(numpy.array((0.0,0.0,0.0)))
sun.velocity = units.ms(numpy.array((0.0,0... | 2,870 | 31.625 | 82 | py |
amuse | amuse-main/examples/syllabus/hydro_minimal.py | """
Minimalistic routine for running a hydrodynamics solver
"""
from __future__ import print_function
from amuse.lab import *
def main(N=100, Mtot=1|units.MSun, Rvir=1|units.RSun, t_end=1|units.hour):
converter=nbody_system.nbody_to_si(Mtot, Rvir)
gas = new_plummer_gas_model(N, convert_nbody=converter)
... | 1,799 | 38.130435 | 84 | py |
amuse | amuse-main/examples/syllabus/stellar_minimal.py | """
Minimalistic routine for running a stellar evolution code
"""
from amuse.lab import *
def main(M, z, model_time):
# stellar = MESA()
stellar = SSE()
stellar.parameters.metallicity = z
stellar.particles.add_particle(Particle(mass=M))
stellar.commit_particles()
initial_luminosity = ste... | 1,519 | 33.545455 | 91 | py |
amuse | amuse-main/examples/syllabus/merge_two_stars.py | """
Initialize two stars to a ertain age and merge them using MMAMS
"""
import sys
import numpy
from amuse.lab import *
from amuse.plot import plot, xlabel, ylabel
from matplotlib import pyplot
def merge_two_stars(Mprim, Msec, t_coll):
bodies = Particles(mass=[Mprim, Msec] |units.MSun)
stellar... | 1,822 | 34.057692 | 97 | py |
amuse | amuse-main/examples/syllabus/plot_gravity.py | """
Simple visualization for N-body integration.
Reads particle set from file (nbody.hdf5) and prints frames.
"""
from matplotlib import pyplot
from amuse.plot import scatter, xlabel, ylabel
from amuse.lab import *
from amuse.io import store
def main(filename, lim):
pyplot.ion()
particles = read_set_from... | 1,354 | 32.04878 | 108 | py |
amuse | amuse-main/examples/syllabus/stellar_simple.py | """
Evolve a population of N stars.
initial mass function between Mmin and Mmax and with stellar evolution with
metalicity z.
"""
from __future__ import print_function
import sys
import numpy
from amuse.lab import *
from amuse.units.optparse import OptionParser
from matplotlib import pyplot
from amuse.plot imp... | 3,440 | 33.757576 | 89 | py |
amuse | amuse-main/examples/syllabus/gravity_minimal.py | """
Minimalistic routine for running a gravity code
"""
from __future__ import print_function
from amuse.lab import *
def main(N=10, W0=7.0, t_end=10):
t_end = t_end | nbody_system.time
bodies = new_king_model(N, W0)
bodies.scale_to_standard()
gravity = Hermite()
gravity.particles.add_particle... | 1,274 | 33.459459 | 129 | py |
amuse | amuse-main/examples/syllabus/initialize_singe_star.py | """
Script for initializing a star and printing its structure
"""
from amuse.lab import *
from matplotlib import pyplot
from amuse.plot import plot, xlabel, ylabel
def get_density_profile(code=MESA, M=1.0|units.MSun, z=0.02):
stellar = code()
stellar.parameters.metallicity = z
stellar.particles.add_part... | 1,414 | 33.512195 | 72 | py |
amuse | amuse-main/examples/syllabus/stellar_gravity_hydro.py | """
example code for bridging a gravity solver with a hydrodynamics solver
"""
from __future__ import print_function
import numpy
from amuse.lab import *
from amuse.couple import bridge
from amuse import datamodel
from amuse.ext.evrard_test import uniform_unit_sphere
def new_sph_particles_from_stellar_wind(stars, m... | 8,412 | 37.949074 | 96 | py |
amuse | amuse-main/examples/syllabus/hydro_experiment.py | """
Simulate the hydrodynamial evolve a disk with a single bump around a star
"""
from __future__ import print_function
from amuse.lab import *
from amuse.io import store
def main(Mstar = 1|units.MSun,
Ndisk=100, Mdisk=0.9|units.MSun,
Rmin=1.0|units.AU, Rmax=100.0|units.AU,
Mbump=0.1|un... | 5,136 | 39.769841 | 96 | py |
amuse | amuse-main/examples/syllabus/sun_and_M67.py | from __future__ import print_function
import numpy
from amuse.lab import *
from amuse.couple import bridge
from matplotlib import pyplot
class MilkyWay_galaxy(object):
def get_gravity_at_point(self, eps, x,y,z):
phi_0 = self.get_potential_at_point(eps, x,y,z)
grav = AdaptingVectorQuantity()
... | 5,242 | 34.187919 | 85 | py |
amuse | amuse-main/examples/syllabus/rad_experiment.py | """
Simulate the radiative and hydrodynamial evolution of a disk with
a single bump around a single star
"""
from __future__ import print_function
from time import time, localtime
from amuse.lab import *
from amuse.ext.molecular_cloud import ism_cube
from amuse.community.simplex.interface import SimpleXInterface... | 10,552 | 40.222656 | 241 | py |
amuse | amuse-main/examples/syllabus/plot_molecular_cloud.py | """
example of molecular cloud evolution with explictly
split SPH and grav evolution
Initial condition is a smooth spherical cloud with random velocities
as in Bonnell et al. (2003)
"""
from __future__ import print_function
import numpy
from matplotlib import pyplot
from amuse.lab import *
from a... | 1,261 | 29.780488 | 123 | py |
amuse | amuse-main/examples/syllabus/gravity_potential.py |
import numpy
from amuse.units import units
from amuse.units import constants
from amuse.units import nbody_system
from amuse.ext.bridge import bridge
from amuse.community.phigrape.interface import PhiGRAPE
from amuse.community.fi.interface import Fi
from amuse.community.gadget2.interface import Gadget2
from matplotlib... | 3,681 | 28.934959 | 86 | py |
amuse | amuse-main/examples/syllabus/stellar_massloss_response.py | """
Calculate the response of a star as a result of mass loss.
"""
from amuse.lab import *
Second_Asymptotic_Giant_Branch = 6 | units.stellar_type
set_printing_strategy("custom",
preferred_units = [units.MSun, units.RSun, units.Myr],
precision = 6, prefix = "",
... | 2,176 | 36.534483 | 147 | py |
amuse | amuse-main/examples/syllabus/hydro_simple.py | """
Simple routine for running a hydrodynamics solver
"""
from __future__ import print_function
from amuse.lab import *
def main(N=100, Mtot=1|units.MSun, Rvir=1|units.RSun,
t_end=1|units.day, n_steps=6):
converter=nbody_system.nbody_to_si(Mtot, Rvir)
bodies = new_plummer_gas_model(N, convert_nbo... | 2,260 | 38.666667 | 100 | py |
amuse | amuse-main/examples/syllabus/merge_two_stars_sph.py | """
Initialize two stars to a ertain age and merge them using MMAMS
"""
import sys
import numpy
from amuse.lab import *
from amuse.plot import plot, xlabel, ylabel
from matplotlib import pyplot
from orbital_elements_to_Cartesian import Orbital_elements_to_pos_vel
from amuse.ext.sph_to_star import convert_SPH_to_st... | 2,923 | 34.658537 | 88 | py |
amuse | amuse-main/examples/syllabus/gravity_hydro.py | """
example code for bridging a gravity solver with a hydrodynamics solver
"""
import numpy
from amuse.lab import *
from amuse.couple import bridge
def get_kepler_elements(model_time, bh, star, converter):
kep = Kepler(converter)
kep.initialize_code()
pos = bh.position - star.position
vel = bh.veloc... | 4,597 | 41.183486 | 96 | py |
amuse | amuse-main/examples/syllabus/molecular_cloud_to_star_cluster.py | """
example of molecular cloud evolution with explictly
split SPH and grav evolution
Initial condition is a smooth spherical cloud with random velocities
as in Bonnell et al. (2003)
"""
from __future__ import print_function
import numpy
from matplotlib import pyplot
from amuse.lab import *
from a... | 10,096 | 32.104918 | 367 | py |
amuse | amuse-main/examples/syllabus/gravity_simple.py | """
Simple routine for running a gravity code
"""
from __future__ import print_function
from amuse.lab import *
def main(N=10, W0=7.0, t_end=10, dt=1, filename="nbody.hdf5"):
t_end = t_end | nbody_system.time
dt = dt | t_end.unit
bodies = new_king_model(N, W0)
bodies.scale_to_standard()
bodies.r... | 2,192 | 38.160714 | 80 | py |
amuse | amuse-main/examples/validation/particles_and_gas_in_cluster.py | from amuse.couple import bridge
from amuse.community.bhtree.interface import BHTree
from amuse.community.hermite.interface import Hermite
from amuse.community.fi.interface import Fi
from amuse.community.octgrav.interface import Octgrav
from amuse.community.gadget2.interface import Gadget2
from amuse.community.phigrape... | 23,500 | 31.149111 | 151 | py |
amuse | amuse-main/examples/validation/particles_and_multiples.py | # from amuse.couple import bridge
from amuse.community.bhtree.interface import BHTree
from amuse.community.hermite.interface import Hermite
from amuse.community.fi.interface import Fi
from amuse.community.octgrav.interface import Octgrav
# from amuse.community.gadget2.interface import Gadget2
from amuse.community.phig... | 9,951 | 31 | 100 | py |
amuse | amuse-main/examples/validation/__init__.py | 0 | 0 | 0 | py | |
amuse | amuse-main/src/amuse/config.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
configuration from config.mk
"""
import os
import warnings
def parse_configmk(filename):
configfile = open(filename, "r")
lines = configfile.readlines()
configfile.close()
cfgvars = dict()
if "amuse configuration" not in lines[0]:
raise Ex... | 2,968 | 25.747748 | 76 | py |
amuse | amuse-main/src/amuse/__init__.py | """
The Astrophysical Multipurpose Software Environment
The aim of AMUSE is to provide a software framework, in which existing codes for
dynamics, stellar evolution, hydrodynamics and radiative transfer can easily be
coupled, in order to perform state-of-the-art simulations of a wide range of
different astrophysica... | 1,903 | 28.292308 | 88 | py |
amuse | amuse-main/src/amuse/lab.py | """
This is the public interface to the AMUSE
*Astrophysical Multipurpose Software Environment* framework.
"""
from amuse.support.core import late
from amuse.datamodel import (
particle_attributes, Particle, Particles, ParticlesSuperset, Grid,
)
from amuse.io import (
write_set_to_file, read_set_from_file, ge... | 4,808 | 26.959302 | 79 | py |
amuse | amuse-main/src/amuse/codes.py |
import sys
_CODES = [
'athena', 'capreole', 'cachedse', 'gadget2', 'mesa', 'octgrav', 'twobody',
'capreole', 'hermite0', 'mocassin', 'phiGRAPE',
'athena', 'evtwin', 'hop', 'seba',
'bhtree', 'evtwin2sse', 'interface', 'smallN',
'bse', 'fi', ... | 915 | 26.757576 | 96 | py |
amuse | amuse-main/src/amuse/community/__init__.py | from amuse.community.interface.stopping_conditions import StoppingConditionInterface
from amuse.community.interface.stopping_conditions import StoppingConditions
from amuse.support.options import option
from amuse.support.options import OptionalAttributes
from amuse.units import units
from amuse.units import nbody_sy... | 1,277 | 30.95 | 89 | py |
amuse | amuse-main/src/amuse/community/octgrav/__init__.py | # -*- mode: python; coding: utf-8 -*-
__author__ = 'Evghenii Gaburov (code), Derek Groen (interface)'
__author_email__ = '<egaburov@science.uva.nl>,<djgroen@science.uva.nl>'
__date__ = '2008-04-14 15:42:00 CEST'
# Dummy file to indicate that this directory is a package.
from .interface import Octgrav
| 318 | 34.444444 | 71 | py |
amuse | amuse-main/src/amuse/community/octgrav/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class OctgravInterface(
CodeI... | 5,783 | 28.814433 | 111 | py |
amuse | amuse-main/src/amuse/community/pikachu/__init__.py | from .interface import Pikachu
| 31 | 15 | 30 | py |
amuse | amuse-main/src/amuse/community/pikachu/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class PikachuInterface(CodeInterf... | 21,295 | 41.935484 | 142 | py |
amuse | amuse-main/src/amuse/community/fastkick/__init__.py | from .interface import Fastkick
| 32 | 15.5 | 31 | py |
amuse | amuse-main/src/amuse/community/fastkick/interface.py | from amuse.community import *
#~from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldCode, GravityFieldInterface
from amuse.community.interface.common import CommonCodeInterface, CommonCode
class FastKickInterface(CodeInterface, CommonCodeInterface, Gravi... | 10,311 | 39.598425 | 166 | py |
amuse | amuse-main/src/amuse/community/halogen/__init__.py | # generated file
from .interface import Halogen
| 48 | 15.333333 | 30 | py |
amuse | amuse-main/src/amuse/community/halogen/interface.py | import os.path
from amuse.community import *
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.support.options import option
class HalogenInterface(CodeInterface, CommonCodeInterface, LiteratureReferencesMixIn,
CodeWithDataDirectories):
"""
This is a stripped-down ... | 22,661 | 39.832432 | 156 | py |
amuse | amuse-main/src/amuse/community/secularmultiple/__init__.py | from .interface import Secularmultiple
| 39 | 19 | 38 | py |
amuse | amuse-main/src/amuse/community/secularmultiple/interface.py | import numpy as np
from amuse.community import (
InCodeComponentImplementation, CodeInterface,
legacy_function, LegacyFunctionSpecification,
INDEX, NO_UNIT, LINK,
)
from amuse.units import units, constants
# units used in the legacy code
# numerical values are defined in src/types.h
UNIT_LENGTH = units.au
... | 84,722 | 49.400357 | 177 | py |
amuse | amuse-main/src/amuse/community/huayno/__init__.py | from .interface import Huayno
| 30 | 14.5 | 29 | py |
amuse | amuse-main/src/amuse/community/huayno/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface,GravityFieldInterface
from amuse.community.interface.gd import GravitationalDynamics,GravityFieldCode
class HuaynoInterface(CodeInterface,
LiteratureReferencesMixIn,
Gravita... | 14,167 | 34.331671 | 154 | py |
amuse | amuse-main/src/amuse/community/simplex/__init__.py | from .interface import Simplex
| 31 | 15 | 30 | py |
amuse | amuse-main/src/amuse/community/simplex/interface.py | import os.path
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.community import *
from amuse.support.options import option
from amuse.datamodel import Particles
class SimpleXInterface(CodeInterface, CommonCodeInterface, LiteratureReferencesMixIn,
CodeWithDataDirectorie... | 48,398 | 35.555136 | 202 | py |
amuse | amuse-main/src/amuse/community/mmams/__init__.py | from .interface import Mmams
| 29 | 14 | 28 | py |
amuse | amuse-main/src/amuse/community/mmams/interface.py | import numpy
from amuse.community import *
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.support.options import option
from amuse.units import units
from amuse.datamodel import Particle
import os.path
class MMAMSInterface(CodeInterface, CommonCodeInterface, LiteratureReferenc... | 27,837 | 49.431159 | 175 | py |
amuse | amuse-main/src/amuse/community/mercury/__init__.py | from .interface import Mercury
| 31 | 15 | 30 | py |
amuse | amuse-main/src/amuse/community/mercury/interface.py | import os
import numpy
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.datamodel import Particles
class MercuryI... | 52,295 | 33.679045 | 154 | py |
amuse | amuse-main/src/amuse/community/nbody6xx/phigrape.py | import re
from amuse.units import units
from amuse.units import nbody_system
from amuse import datamodel
"""
fileformat:
===========
diskstep # diskstep is used to number out, should be 0 for input dat
N # number of particles
time # current time, usually starts ... | 4,248 | 37.627273 | 126 | py |
amuse | amuse-main/src/amuse/community/nbody6xx/interface_new.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class Nbody6xxInterface(CodeInter... | 1,140 | 33.575758 | 95 | py |
amuse | amuse-main/src/amuse/community/nbody6xx/__init__.py | # generated file
from .interface import Nbody6xx
| 49 | 15.666667 | 31 | py |
amuse | amuse-main/src/amuse/community/nbody6xx/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class Nbody6xxInterface(
... | 10,090 | 32.976431 | 97 | py |
amuse | amuse-main/src/amuse/community/nbody6xx/debug.py | from amuse.lab import *
from .interface import Nbody6xx
from amuse.units import nbody_system
if __name__ == "__main__":
inst = Nbody6xx(redirection="none")
inst.initialize_code()
inst.particles.mass = 1 | nbody_system.mass
inst.evolve_model(2|nbody_system.time)
inst.get_velocity(1)
inst.get_... | 622 | 26.086957 | 89 | py |
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