repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
amuse | amuse-main/src/amuse/community/mesa_r2208/patch_files.py | #!/usr/bin/env python
import os
import sys
import subprocess
import re
PATCHESDIR = "patches"
QUILT_PC = ".pc"
def execute_command_line(arguments, cwd=None):
with subprocess.Popen(
arguments, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd=cwd
) as process:
stdoutstring, stderrstring = p... | 2,861 | 24.783784 | 74 | py |
amuse | amuse-main/src/amuse/community/mesa_r2208/download.py | #!/usr/bin/env python
import subprocess
import os
import sys
import time
import urllib.request
import urllib.parse
import urllib.error
from optparse import OptionParser
class GetCodeFromHttp(object):
url_template = "https://zenodo.org/record/2603017/files/mesa-r{version}.zip"
filename_template = "mesa-r{vers... | 2,152 | 25.9125 | 80 | py |
amuse | amuse-main/src/amuse/community/mesa_r2208/__init__.py | """
The Astrophysical Multipurpose Software Environment
AMUSE contains a lot of functionality to execute astrophysical experiments.
Look into the interface packages for the interfacing to physical model simulation software.
You can also use AMUSE to convert common data formats.
"""
| 285 | 30.777778 | 91 | py |
amuse | amuse-main/src/amuse/community/mesa_r2208/interface.py | import os
import numpy
import shutil
from operator import itemgetter
from amuse.community import *
from amuse.community.interface.se import StellarEvolution, StellarEvolutionInterface, \
InternalStellarStructure, InternalStellarStructureInterface
from amuse.units.quantities import VectorQuantity
from amuse.suppor... | 68,390 | 42.644544 | 152 | py |
amuse | amuse-main/src/amuse/community/kepler/test_kepler.py | import sys
import unittest
import numpy
import random
import collections
import getopt
import os
from amuse.units import nbody_system
from amuse.units import units
from amuse.community.kepler.interface import Kepler
from amuse import datamodel
from amuse.datamodel import particle_attributes
from amuse.rfi.core import... | 2,657 | 27.580645 | 60 | py |
amuse | amuse-main/src/amuse/community/kepler/__init__.py | from .interface import Kepler
| 30 | 14.5 | 29 | py |
amuse | amuse-main/src/amuse/community/kepler/interface.py | from amuse.community import *
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.support.options import option
from amuse.units import units
import os.path
class KeplerInterface(CodeInterface,
CommonCodeInterface):
"""
Kepler orbit manipulation functio... | 27,362 | 36.742069 | 107 | py |
amuse | amuse-main/src/amuse/community/symple/test.py | from amuse.lab import *
from interface import symple
from matplotlib import pyplot as plt
import sys, math
n = 2
# Select a gravity code.
g = symple(redirection='none')
g.initialize_code()
g.parameters.set_defaults()
# Make a binary.
p = new_plummer_model(n)
r = 0.5|nbody_system.length
vcirc = (0.25*nbody_system.G... | 2,007 | 22.08046 | 78 | py |
amuse | amuse-main/src/amuse/community/symple/test_si.py | from amuse.lab import *
from .interface import symple
n = 10
total_mass = n|units.MSun
length = 1|units.parsec
converter = nbody_system.nbody_to_si(total_mass, length)
# Select a gravity code.
g = symple(convert_nbody=converter, redirection='none')
g.initialize_code()
g.parameters.set_defaults()
# Make an N-body s... | 1,143 | 23.340426 | 78 | py |
amuse | amuse-main/src/amuse/community/symple/__init__.py | # generated file
from .interface import Symple
| 47 | 15 | 29 | py |
amuse | amuse-main/src/amuse/community/symple/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import SinglePointGravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class sympleInterface(... | 11,124 | 29.988858 | 82 | py |
amuse | amuse-main/src/amuse/community/sphray/__init__.py | from .interface import Sphray
| 30 | 14.5 | 29 | py |
amuse | amuse-main/src/amuse/community/sphray/interface.py | import os.path
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.community import *
from amuse.support.options import option
class SPHRayInterface(CodeInterface, CommonCodeInterface, LiteratureReferencesMixIn,
CodeWithDataDirectories):
"""
SPHRAY is a smoothed pa... | 35,232 | 33.67815 | 110 | py |
amuse | amuse-main/src/amuse/community/sse/__init__.py | # -*- mode: python; coding: utf-8 -*-
__author__ = 'Steve McMillan'
__author_email__ = '<Steve@physics.drexel.edu>'
__date__ = '2007-12-06'
# Dummy file to indicate that this directory is a package.
from .interface import Sse
| 242 | 26 | 58 | py |
amuse | amuse-main/src/amuse/community/sse/interface.py | import numpy
from operator import itemgetter
from amuse.community import *
from amuse.units import units
from amuse.units import constants
from amuse.support.interface import InCodeComponentImplementation
from amuse.community.interface import common
from amuse.datamodel import Particles
from amuse.datamodel import Par... | 19,473 | 41.334783 | 140 | py |
amuse | amuse-main/src/amuse/community/phantom/download.py | #!/usr/bin/env python
import subprocess
import os
import sys
import time
import urllib.request
import urllib.parse
import urllib.error
from optparse import OptionParser
class GetCodeFromHttp(object):
url_template = "https://github.com/rieder/phantom/archive/{version}.zip"
filename_template = "{version}.zip"
... | 2,297 | 26.357143 | 79 | py |
amuse | amuse-main/src/amuse/community/phantom/__init__.py | # generated file
from .interface import Phantom
| 48 | 15.333333 | 30 | py |
amuse | amuse-main/src/amuse/community/phantom/interface.py | "Interface to Phantom"
from amuse.community import (
CodeInterface,
LegacyFunctionSpecification,
legacy_function,
LiteratureReferencesMixIn,
)
from amuse.community.interface.gd import (
GravitationalDynamicsInterface,
GravitationalDynamics,
# GravityFieldInterface,
GravityFieldCode,
)
... | 72,402 | 30.479565 | 104 | py |
amuse | amuse-main/src/amuse/community/adaptb/functions.py | def read_log(filename):
infile = open(filename, "r") # open file
data = [] # declare data container
while True: # while data to read
line = infile.readline() # read data
if not line:
break
line = line.split() # distinguish columns
data.append(line) # put data in container
in... | 1,964 | 22.674699 | 54 | py |
amuse | amuse-main/src/amuse/community/adaptb/__init__.py | from .interface import Adaptb
| 30 | 14.5 | 29 | py |
amuse | amuse-main/src/amuse/community/adaptb/interface.py | import warnings
from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface, GravitationalDynamics
class AdaptbInterface(CodeInterface, GravitationalDynamicsInterface, LiteratureReferencesMixIn,
StoppingConditionInterface, CodeWithDataDirectories):
"""
Adaptb... | 10,898 | 44.4125 | 136 | py |
amuse | amuse-main/src/amuse/community/mpiamrvac/patch_files.py | #!/usr/bin/env python
import os
import sys
import subprocess
import re
PATCHESDIR = "patches"
QUILT_PC = ".pc"
def execute_command_line(arguments, cwd = None):
process = subprocess.Popen(arguments, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd = cwd)
stdoutstring, stderrstring = process.communicate()... | 2,808 | 30.561798 | 116 | py |
amuse | amuse-main/src/amuse/community/mpiamrvac/download.py | #!/usr/bin/env python
import subprocess
import os
import sys
import time
import urllib.request
import urllib.parse
import urllib.error
from optparse import OptionParser
class GetCodeFromHttp(object):
url_template = "http://amuse.strw.leidenuniv.nl/codes/mpiamrvac-r{version}.tgz"
filename_template = "mpiamrva... | 2,048 | 25.960526 | 83 | py |
amuse | amuse-main/src/amuse/community/mpiamrvac/__init__.py | # generated file
from .interface import Mpiamrvac
| 50 | 16 | 32 | py |
amuse | amuse-main/src/amuse/community/mpiamrvac/interface.py | from amuse.community import *
from amuse.community.interface.hydro import HydrodynamicsInterface
from amuse.support.options import OptionalAttributes, option
from amuse.units import generic_unit_system
from amuse.community.interface.common import CommonCode
import os
class MpiAmrVacInterface(CodeInterface, Hydrodynam... | 94,470 | 33.179088 | 153 | py |
amuse | amuse-main/src/amuse/community/mpiamrvac/patch_files_ifort91.py | #!/usr/bin/env python
import os
import sys
import subprocess
import re
PATCHESDIR = "patches"
QUILT_PC = ".pc"
def execute_command_line(arguments, cwd = None):
process = subprocess.Popen(arguments, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd = cwd)
stdoutstring, stderrstring = process.communicate()... | 1,168 | 28.974359 | 116 | py |
amuse | amuse-main/src/amuse/community/mosse/__init__.py | from .interface import Mosse
| 29 | 14 | 28 | py |
amuse | amuse-main/src/amuse/community/mosse/interface.py | import numpy
from operator import itemgetter
from amuse.community import *
from amuse.units import units
from amuse.units import constants
from amuse.support.interface import InCodeComponentImplementation
from amuse.community.interface import common
from amuse.datamodel import Particles
from amuse.datamodel import Par... | 21,088 | 41.776876 | 140 | py |
amuse | amuse-main/src/amuse/community/phigrape/__init__.py | from .interface import Phigrape
| 32 | 15.5 | 31 | py |
amuse | amuse-main/src/amuse/community/phigrape/interface.py | import numpy
from amuse.units import nbody_system
from amuse.units import units
from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.... | 8,862 | 30.207746 | 213 | py |
amuse | amuse-main/src/amuse/community/ph4/test_sync.py | #!/bin/env python
import math
import collections
import getopt
import numpy
import os
import random
import sys
import unittest
from time import process_time as cputime
from time import time as wallclocktime
from amuse.community.ph4.interface import ph4 as grav
from amuse.units import nbody_system
from amuse.units imp... | 10,277 | 29.140762 | 82 | py |
amuse | amuse-main/src/amuse/community/ph4/test_multiples2.py | import collections
import getopt
import numpy
import os
import random
import sys
import unittest
from time import process_time as clock
from amuse.community.ph4.interface import ph4 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.interface import Kepler
from amuse.couple import ... | 17,202 | 31.336466 | 80 | py |
amuse | amuse-main/src/amuse/community/ph4/plot_energy_vs_t.py | #!/usr/bin/env python
import getopt
import string
from pylab import *
import re
import numpy
from math import log10
# Display a time sequence from a (not yet standard) AMUSE log file.
if __name__ == '__main__':
try:
opts, args = getopt.getopt(sys.argv[1:], "f:lq:t:")
except getopt.GetoptErr... | 3,376 | 24.583333 | 76 | py |
amuse | amuse-main/src/amuse/community/ph4/plot_kT_vs_t.py | #!/usr/bin/env python
import getopt
import string
from pylab import *
import re
import numpy
from math import log10
# Display a time sequence from a (not yet standard) AMUSE log file.
if __name__ == '__main__':
try:
opts, args = getopt.getopt(sys.argv[1:], "f:lq:t:")
except getopt.GetoptE... | 3,250 | 23.628788 | 72 | py |
amuse | amuse-main/src/amuse/community/ph4/test_multiples.py | import collections
import getopt
import numpy
import os
import random
import sys
import unittest
from amuse.community.ph4.interface import ph4 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.interface import Kepler
from amuse.couple import multiples
from amuse.units import nbod... | 8,236 | 30.083019 | 79 | py |
amuse | amuse-main/src/amuse/community/ph4/__init__.py | # generated file
from .interface import Ph4
| 44 | 14 | 26 | py |
amuse | amuse-main/src/amuse/community/ph4/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
# *** This script, together with ... | 25,871 | 34.833795 | 172 | py |
amuse | amuse-main/src/amuse/community/ph4/test_ph4.py | #!/bin/env python
import collections
import getopt
import numpy
import os
import random
import sys
import unittest
from time import process_time as cputime
from time import time as wallclocktime
from amuse.community.ph4.interface import ph4 as grav
from amuse.units import nbody_system
from amuse.units import units
f... | 11,044 | 29.938375 | 84 | py |
amuse | amuse-main/src/amuse/community/ph4/binary_hist.py | from pylab import *
import sys
import re
if __name__ == '__main__':
if len(sys.argv) != 3:
print("usage: python binary_hist.py <input filename> <time of histogram>")
sys.exit(1)
else:
fname = sys.argv[1]
time = float(sys.argv[2])
f = open(fname, "r")
inblock = Fa... | 1,007 | 29.545455 | 83 | py |
amuse | amuse-main/src/amuse/community/ph4/plotq.py | #!/usr/bin/env python
import sys
from math import log10, sqrt
import numpy as np
import matplotlib.pyplot as plt
import string
import re
# Display a time sequence from a set of (not yet standard) AMUSE log
# files. Files, colors, and styles should be separated by spaces.
if __name__ == '__main__':
# Command-li... | 7,704 | 29.334646 | 76 | py |
amuse | amuse-main/src/amuse/community/ph4/util/plot_smalln_data.py | import sys
import getopt
import math
import numpy
import time
import matplotlib.pyplot as plt
import matplotlib.animation as animate
# TODO: Colormap should respond to changes in index array.
def unpack_line(r, np, nq):
tt = float(r[0])
ii = []
mm = []
xx = []
yy = []
zz = []
for ... | 11,443 | 24.774775 | 78 | py |
amuse | amuse-main/src/amuse/community/ph4/util/initialize_system.py | import collections
import getopt
import numpy
import os
import random
import sys
import unittest
import pickle
from time import clock
from time import gmtime
from time import mktime
from amuse.community.ph4.interface import ph4 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.in... | 8,274 | 30.949807 | 77 | py |
amuse | amuse-main/src/amuse/community/ph4/util/run_ph4.py | import collections
import getopt
import numpy
import os
import random
import sys
import pickle
import math
import unittest
from time import clock
from amuse.community.ph4.interface import ph4 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.interface import Kepler
from amuse.cou... | 9,744 | 32.259386 | 80 | py |
amuse | amuse-main/src/amuse/community/ph4/util/utils.py | import collections
import getopt
import numpy
import os
import random
import sys
import pickle
import numpy as np
import unittest
from time import clock
from amuse.community.ph4.interface import ph4 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.interface import Kepler
from am... | 10,630 | 33.516234 | 80 | py |
amuse | amuse-main/src/amuse/community/ph4/util/plotq.py | #!/usr/bin/env python
import sys
from math import log10, sqrt
import numpy as np
import matplotlib.pyplot as plt
import string
import re
# Display a time sequence from a set of (not yet standard) AMUSE log
# files. Files, colors, and styles should be separated by spaces.
if __name__ == '__main__':
# Command-li... | 7,704 | 29.334646 | 76 | py |
amuse | amuse-main/src/amuse/community/hacs64/test_hacs.py | import collections
import getopt
import numpy
import os
import random
import sys
import unittest
from amuse.community.hacs64.interface import Hacs64 as grav
from amuse.units import nbody_system
from amuse.units import units
from amuse import datamodel
from amuse.datamodel import particle_attributes
from amuse.rfi.cor... | 9,186 | 29.121311 | 94 | py |
amuse | amuse-main/src/amuse/community/hacs64/test_multiples.py | import sys, unittest, numpy, random, collections, getopt, os, math
from amuse.units import nbody_system
from amuse.units import units
from amuse.community.hacs64.interface import Hacs64 as grav
from amuse.community.smalln.interface import SmallN
from amuse.community.kepler.interface import Kepler
from amuse import da... | 37,750 | 33.857802 | 80 | py |
amuse | amuse-main/src/amuse/community/hacs64/__init__.py | # generated file
from .interface import Hacs64
| 47 | 15 | 29 | py |
amuse | amuse-main/src/amuse/community/hacs64/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravitationalDynamicsInterface
# *** This script, together with the defaults in
# *** GravitationalDynamicsInterface, will be used to generate both
# *** the header file interface.h and... | 13,192 | 35.955182 | 97 | py |
amuse | amuse-main/src/amuse/community/fi/patch_globals_dot_h.py | #!/usr/bin/env python
from optparse import OptionParser
import os.path
import sys
import re
def get_substitution_rules(
value_of_periodic_flag = False,
):
result = []
replace_periodic_re = re.compile(r'PARAMETER \(periodic=\.([A-Z]+)\.\)')
fortran_boolean_value = "TRUE" if value_of_perio... | 2,385 | 25.511111 | 95 | py |
amuse | amuse-main/src/amuse/community/fi/__init__.py | from .interface import Fi, FiMap
| 33 | 16 | 32 | py |
amuse | amuse-main/src/amuse/community/fi/interface.py | import os
import numpy
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
from amuse.community import *
from amuse.... | 145,248 | 34.143721 | 159 | py |
amuse | amuse-main/src/amuse/community/evtwin/__init__.py | from .interface import Evtwin
| 30 | 14.5 | 29 | py |
amuse | amuse-main/src/amuse/community/evtwin/interface.py | import os.path
from amuse.support import exceptions
from amuse.community import *
from amuse.community.interface.se import StellarEvolution, StellarEvolutionInterface, \
InternalStellarStructure, InternalStellarStructureInterface
from amuse.support.interface import InCodeComponentImplementation
from amuse.support.... | 38,551 | 42.46336 | 121 | py |
amuse | amuse-main/src/amuse/community/mocassin/patch_files.py | #!/usr/bin/env python
import os
import sys
import subprocess
import re
PATCHESDIR = "patches"
QUILT_PC = ".pc"
def execute_command_line(arguments, cwd = None):
process = subprocess.Popen(arguments, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd = cwd)
stdoutstring, stderrstring = process.communicate()... | 2,808 | 30.561798 | 116 | py |
amuse | amuse-main/src/amuse/community/mocassin/download.py | #!/usr/bin/env python
import subprocess
import os
import sys
import time
import urllib.request
import urllib.parse
import urllib.error
from optparse import OptionParser
class GetCodeFromHttp(object):
url_template = "http://amuse.strw.leidenuniv.nl/codes/mocassin.{version}.tar.gz"
filename_template = "mocassi... | 2,232 | 26.9125 | 89 | py |
amuse | amuse-main/src/amuse/community/mocassin/__init__.py | # generated file
from .interface import Mocassin
| 49 | 15.666667 | 31 | py |
amuse | amuse-main/src/amuse/community/mocassin/interface.py | from amuse.community import *
from amuse.community.interface.common import CommonCodeInterface
from amuse.support.core import OrderedDictionary
from amuse.units import derivedsi
from amuse.support.options import option
import os
class MocassinInterface(CodeInterface, CommonCodeInterface,
CodeWithDataDirectori... | 46,591 | 34.404255 | 141 | py |
amuse | amuse-main/src/amuse/community/twobody/twobody.py | from amuse.community.twobody.interface import *
| 48 | 23.5 | 47 | py |
amuse | amuse-main/src/amuse/community/twobody/test_moon.py | import numpy
import amuse.community.twobody.twobody as twobody
from amuse.units.units import *
if __name__=='__main__':
pos_earth=numpy.array([ 8.418982185410142E-01,
5.355823303978186E-01,
2.327960005926782E-05]) | AU
vel_earth=numpy.array([-9.488931... | 2,236 | 43.74 | 87 | py |
amuse | amuse-main/src/amuse/community/twobody/__init__.py | from .interface import Twobody
| 31 | 15 | 30 | py |
amuse | amuse-main/src/amuse/community/twobody/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
import copy,numpy
import numpy as ... | 18,958 | 31.464041 | 99 | py |
amuse | amuse-main/src/amuse/community/simplex2_5/__init__.py | 0 | 0 | 0 | py | |
amuse | amuse-main/src/amuse/community/simplex2_5/interface.py | import os.path
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.community import *
from amuse.community.simplex.interface import *
| 171 | 27.666667 | 76 | py |
amuse | amuse-main/src/amuse/community/fractalcluster/__init__.py | from .interface import Fractalcluster
| 38 | 18.5 | 37 | py |
amuse | amuse-main/src/amuse/community/fractalcluster/interface.py | import numpy
import os.path
from amuse.community import *
from amuse.datamodel import Particles
from amuse import datamodel
from amuse.units import nbody_system
from amuse.community.interface.common import CommonCodeInterface, CommonCode
class FractalClusterInterface(CodeInterface, LiteratureReferencesMixIn):
"""... | 10,762 | 37.577061 | 128 | py |
amuse | amuse-main/src/amuse/community/hop/__init__.py | # generated file
from .interface import Hop
| 44 | 14 | 26 | py |
amuse | amuse-main/src/amuse/community/hop/interface.py | '''
This is the interface file for the HOP group-finding algorithm. HOP starts by determining
the densest neighbor of each particle (which can be the particle proper). The algorithm
then groups particles together by jumping from densest neighbor to densest neighbor until
a density peak is reached.
core HOP algorith... | 38,683 | 37.878392 | 139 | py |
amuse | amuse-main/src/amuse/community/mameclot/__init__.py | from .interface import Mameclot
| 32 | 15.5 | 31 | py |
amuse | amuse-main/src/amuse/community/mameclot/interface.py | import numpy
import os
from amuse.community import LiteratureReferencesMixIn
from amuse.datamodel import Particles,ParticlesWithUnitsConverted
from subprocess import Popen, PIPE
from amuse.units import units,nbody_system
class mameclot(LiteratureReferencesMixIn):
"""
MAMECLOT: MAke ME a CLuster Or Two
... | 10,163 | 42.435897 | 113 | py |
amuse | amuse-main/src/amuse/community/hermite/__init__.py | from .interface import Hermite
| 31 | 15 | 30 | py |
amuse | amuse-main/src/amuse/community/hermite/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import SinglePointGravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class HermiteInterface... | 11,097 | 30.982709 | 130 | py |
amuse | amuse-main/src/amuse/community/flash/__init__.py | from .interface import Flash
| 29 | 14 | 28 | py |
amuse | amuse-main/src/amuse/community/flash/interface.py | from amuse.community import *
from amuse.community.interface.hydro import HydrodynamicsInterface
from amuse.support.options import OptionalAttributes, option
from amuse.units import generic_unit_system
from amuse.units import si
from amuse.community.interface.common import CommonCode
import numpy as np
import os
lengt... | 44,808 | 35.60866 | 171 | py |
amuse | amuse-main/src/amuse/community/bonsai/__init__.py | # generated file
from .interface import Bonsai
| 47 | 15 | 29 | py |
amuse | amuse-main/src/amuse/community/bonsai/interface.py | import os.path
from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import SinglePointGravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class B... | 13,857 | 41.121581 | 166 | py |
amuse | amuse-main/src/amuse/community/cachedse/__init__.py | from .interface import Cachedse
| 32 | 15.5 | 31 | py |
amuse | amuse-main/src/amuse/community/cachedse/interface.py | import os
import pickle
import fnmatch
#import numpy as np
from amuse.units import units
from amuse.units import constants
from amuse import datamodel
class CachedStellarEvolution:
"""
The CachedStellarEvolution wraps around any other stellar evolution class
and then caches the evolution. In particular... | 12,736 | 41.036304 | 136 | py |
amuse | amuse-main/src/amuse/community/kepler_orbiters/test_kepler.py | import numpy
import struct
from .interface import Kepler
from amuse.units import nbody_system
from amuse.units import units,constants
from amuse.ic.plummer import new_plummer_model
from amuse.datamodel import Particle
#from matplotlib import pyplot
import time
from amuse.ext.orbital_elements import orbital_eleme... | 13,220 | 23.758427 | 100 | py |
amuse | amuse-main/src/amuse/community/kepler_orbiters/__init__.py | from .interface import Kepler_orbiters
| 39 | 19 | 38 | py |
amuse | amuse-main/src/amuse/community/kepler_orbiters/interface.py | from amuse.community import *
from amuse.community.interface.common import CommonCodeInterface, CommonCode
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics, GravityFieldCode
from amuse.support.options import option
from amuse.units im... | 13,309 | 40.987382 | 102 | py |
amuse | amuse-main/src/amuse/community/bhtree/__init__.py | # -*- mode: python; coding: utf-8 -*-
__author__ = 'Simon Portegies Zwart'
__author_email__ = '<spz@science.uva.nl>'
__date__ = '2006-11-11 15:32:00 CEST'
# Dummy file to indicate that this directory is a package.
from .interface import Bhtree
| 260 | 28 | 58 | py |
amuse | amuse-main/src/amuse/community/bhtree/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamicsInterface
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import SinglePointGravityFieldInterface
from amuse.community.interface.gd import GravityFieldCode
class BHTreeInterface(... | 11,557 | 32.894428 | 111 | py |
amuse | amuse-main/src/amuse/community/etics/__init__.py | # generated file
from .interface import Etics
| 46 | 14.666667 | 28 | py |
amuse | amuse-main/src/amuse/community/etics/interface.py | from amuse.community import *
from amuse.community.interface.gd import GravitationalDynamics
from amuse.community.interface.gd import GravitationalDynamicsInterface
class EticsInterface(CodeInterface, GravitationalDynamicsInterface, LiteratureReferencesMixIn):
"""
.. [#] ADS:2014ApJ...792...98M (Meiron, Y.... | 8,146 | 49.91875 | 128 | py |
amuse | amuse-main/src/amuse/community/etics/format-convert.py | #!/usr/bin/env python
# This script converts phiGRAPE snapshot files to HDF5.
# Author: Yohai Meiron
import argparse, os, sys, numpy, re
if __name__ == "__main__":
# Set commandline parameters
parser = argparse.ArgumentParser(description='Convert phiGRPAE snapshot files into HDF5 (h5part) format.')
parser... | 5,836 | 44.248062 | 149 | py |
amuse | amuse-main/src/amuse/community/mmc/validnoctrl.py | import numpy as np
from amuse.community import *
from amuse.test.amusetest import TestWithMPI
from amuse.community.hermite0.interface import HermiteInterface
from amuse.community.phiGRAPE.interface import PhiGRAPEInterface
from amuse.community.bhtree.interface import BHTreeInterface
from amuse.ext.ClusterCore import *
... | 6,175 | 29.423645 | 117 | py |
amuse | amuse-main/src/amuse/community/mmc/interface_orig.py | from amuse.community import *
class mmc2Interface(CodeInterface):
include_headers = ['worker_code.h']
def __init__(self, **keyword_arguments):
CodeInterface.__init__(self, name_of_the_worker="mmc2_worker", **keyword_arguments)
@legacy_function
def echo_int():
function = L... | 771 | 29.88 | 91 | py |
amuse | amuse-main/src/amuse/community/mmc/makeinterface.py | """
this is a tmp script, after all fctns are in place etc..
I'll remove this
"""
funcs =\
[['irun','','init_sequence_of_rnd_numbs'],
['nt','','tot_numb_of_objs'],
['nt0','','num'],
['istart','','start_or_restart'],
['ncor','','numb_of_stars_to_calc_c_parms'],
['nmin','','min_numb_of_stars_to_calc_c_parms'],
['n... | 10,752 | 27.372032 | 107 | py |
amuse | amuse-main/src/amuse/community/mmc/coreradius.py | import os
import sys
import numpy
from amuse.community.hop.interface import HopInterface as Hop
from amuse.ic.plummer import MakePlummerModel
import logging
#logging.basicConfig(level=logging.DEBUG)
numpy.random.seed(1234)
def hopfromnb(nb,ids):
m,r,x,y,z,vx,vy,vz,err=nb.get_state(ids)
hop=Hop()
ids2,err=hop.... | 1,263 | 19.387097 | 88 | py |
amuse | amuse-main/src/amuse/community/mmc/__init__.py | # generated file
from .interface import Mmc
| 44 | 14 | 26 | py |
amuse | amuse-main/src/amuse/community/mmc/interface.py | from amuse.community import *
from amuse.community.mmc.amuselib.interface import supportInterface
from amuse.support.options import OptionalAttributes, option
from amuse.ext.polarsupport import PolarSupport
import os
import numpy as np
class mmcInterface(CodeInterface, PolarSupport, CodeWithDataDirectories):
use_... | 33,402 | 34.686966 | 117 | py |
amuse | amuse-main/src/amuse/community/mmc/valid.py | import numpy as np
from amuse.community import *
from amuse.test.amusetest import TestWithMPI
from amuse.community.hermite0.interface import HermiteInterface
from amuse.community.phiGRAPE.interface import PhiGRAPEInterface
from amuse.community.bhtree.interface import BHTreeInterface
import time as systime
from . impo... | 5,531 | 30.254237 | 117 | py |
amuse | amuse-main/src/amuse/community/mmc/amuselib/example.py | from amuse.community import *
from amuse.test.amusetest import TestWithMPI
from .interface import supportInterface
import numpy as np
if __name__ == '__main__':
instance = supportInterface(redirection='none')
x = np.zeros(2000)
y = np.zeros(2000)
z = np.zeros(2000)
#R = instance.many_points_on_s... | 505 | 19.24 | 51 | py |
amuse | amuse-main/src/amuse/community/mmc/amuselib/test_support.py | from amuse.community import *
from amuse.test.amusetest import TestWithMPI
from .interface import supportInterface
import numpy as np
class supportInterfaceTests(TestWithMPI):
def test1(self):
instance = supportInterface()
print(instance.add([1,1,1,1,1],[1,1,1,1,1])['sum'])
instance.s... | 568 | 21.76 | 59 | py |
amuse | amuse-main/src/amuse/community/mmc/amuselib/__init__.py | 0 | 0 | 0 | py | |
amuse | amuse-main/src/amuse/community/mmc/amuselib/interface.py | from amuse.community import *
class supportInterface(CodeInterface):
include_headers = ['worker_code.h']
def __init__(self, **keyword_arguments):
CodeInterface.__init__(self, name_of_the_worker="support_worker", **keyword_arguments)
@legacy_function
def add():
function = ... | 1,875 | 38.083333 | 94 | py |
amuse | amuse-main/src/amuse/io/base.py | import textwrap
import struct
import numpy
import os.path
from amuse.support.core import late
from amuse.support import exceptions
registered_fileformat_processors = {}
class IoException(exceptions.CoreException):
formatstring = "IO exception: {0}"
class UnsupportedFormatException(IoException):
"""Raise... | 17,890 | 32.503745 | 138 | py |
amuse | amuse-main/src/amuse/io/phigrape.py | import re
from amuse.units import units
from amuse.units import nbody_system
from amuse import datamodel
"""
fileformat:
===========
diskstep # diskstep is used to number out, should be 0 for input dat
N # number of particles
time # current time, usually starts ... | 4,241 | 37.563636 | 126 | py |
amuse | amuse-main/src/amuse/io/fi_io.py | import struct
import numpy
from collections import namedtuple
from amuse.io import base
from amuse.units import units
from amuse.units import nbody_system
from amuse.support.core import late
from amuse import datamodel
ioversion=2
nheader=8
nihead=32
nrhead=32
nphead=64
# name - type - index in phead - target part... | 6,347 | 35.482759 | 141 | py |
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