ESMBind (ESMB) for Protein Binding Sites
Collection
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone. • 14 items • Updated • 5
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This is a refined version of a dataset obtained from UniProt (see here).
The data was first sorted by family, then random families were selected until approximately 20% of the data was separates out for test data.
Next, each sequences longer than 1000 residues was segmented into non-overlapping sections of 1000 amino acids or less. Any sequences
with only partial binding site annotations were thrown out (any sequences with <, >, or ?).
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