record_id stringlengths 40 45 | dataset stringclasses 3
values | task_family stringclasses 7
values | uniprot_accession stringlengths 6 6 ⌀ | entry_name stringlengths 6 11 ⌀ | protein_name stringlengths 5 500 ⌀ | sequence stringlengths 16 18.6k ⌀ | function stringlengths 13 3k ⌀ | text stringlengths 67 2.37k | graph_json stringlengths 618 22.7k | forest_json stringlengths 559 1.12k | metadata_json stringlengths 292 5.04k | structure_coordinates listlengths 3 512 | ca_coordinates listlengths 16 512 ⌀ | backbone_coordinates listlengths 16 512 ⌀ | coordinate_mask listlengths 3 512 | plddt listlengths 16 512 ⌀ | residue_names listlengths 3 512 | residue_indices listlengths 3 512 | chain_ids listlengths 3 512 | structure_source stringclasses 3
values | structure_file stringclasses 453
values | structure_file_cached bool 1
class | structure_cif_url stringlengths 59 66 ⌀ | foldseek_3di_sequence stringlengths 16 2.7k ⌀ | foldseek_3di_available bool 1
class | foldseek_3di_status stringclasses 1
value | mean_plddt float64 25.9 98.7 ⌀ | residue_count int64 16 512 ⌀ | coordinate_residue_count int64 3 512 | source_residue_count int64 3 26.2k | coordinate_truncated bool 2
classes | split_cluster stringlengths 12 12 | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
afdb_structure_fot_E9Q8I9_4a8967ed3df7add7 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q8I9 | FRY_MOUSE | Protein furry homolog | "MASQQDSGFFEISIKYLLKSWSNASPVGNGYIKPPVPPASGTHREKGPPAMLPINVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQ(...TRUNCATED) | "Plays a crucial role in the structural integrity of mitotic centrosomes and in the maintenance of s(...TRUNCATED) | "UniProt E9Q8I9 structure-function record. Protein: Protein furry homolog. Function: Plays a crucial(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q8I9-3-F1-model_v6.bcif\", \"cif_url\": \"h(...TRUNCATED) | [[-10.564000129699707,-30.22599983215332,-30.966999053955078],[-9.005999565124512,-26.97999954223632(...TRUNCATED) | [[-10.564000129699707,-30.22599983215332,-30.966999053955078],[-9.005999565124512,-26.97999954223632(...TRUNCATED) | [[[-9.798999786376953,-30.958999633789062,-29.93899917602539],[-10.564000129699707,-30.2259998321533(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [32.78,30.91,31.19,32.69,32.91,33.75,35.59,33.41,41.41,39.62,46.88,47.94,51.0,48.09,45.19,54.72,40.4(...TRUNCATED) | ["MET","GLU","ILE","THR","THR","ALA","CYS","TRP","ARG","ARG","SER","CYS","VAL","ILE","SER","LEU","IL(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q8I9-3-F1-model_v6.cif | "ddppddpddpvvvvvvvvvvdddddddddddddddddddddddddddddqpdqpppddplvsvvvvlvsvlvvvlvvllvvqlvddlldacccrffppn(...TRUNCATED) | true | foldseek_3di_extracted | 85.346719 | 512 | 512 | 814 | true | 4a8967ed3df7 | train | |
afdb_structure_fot_E9Q8Q8_15b5d79978d89e2d | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q8Q8 | SACA6_MOUSE | Sperm acrosome membrane-associated protein 6 | "MTSQRSLSSPQTRRPSVMGLISLVGSIVLLFLLIFRASTWACLFCFTTYEERLRVCQLFVGREETKINLCRNELEGAFEDLKDMKINYDERSYLHDEFT(...TRUNCATED) | Sperm protein required for fusion of sperm with the egg membrane during fertilization. | "UniProt E9Q8Q8 structure-function record. Protein: Sperm acrosome membrane-associated protein 6. Fu(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q8Q8-F1-model_v6.cif\", (...TRUNCATED) | [[-38.5099983215332,-20.98200035095215,-81.90399932861328],[-38.356998443603516,-19.516000747680664,(...TRUNCATED) | [[-38.5099983215332,-20.98200035095215,-81.90399932861328],[-38.356998443603516,-19.516000747680664,(...TRUNCATED) | [[[-39.40999984741211,-20.358999252319336,-82.89700317382812],[-38.5099983215332,-20.98200035095215,(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [45.94,43.59,51.91,47.72,50.5,50.59,47.84,45.78,43.66,46.84,46.41,43.66,49.69,50.53,52.0,53.56,60.34(...TRUNCATED) | ["MET","THR","SER","GLN","ARG","SER","LEU","SER","SER","PRO","GLN","THR","ARG","ARG","PRO","SER","VA(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q8Q8-F1-model_v6.cif | "dddddddddddpddddpvvvvvvvvvvvvvvvvvvvpaqffllplqdppvlllllqclqpnpdpvssvvlsvllcvlrvvrsfdkafpvcsvvlsvlsv(...TRUNCATED) | true | foldseek_3di_extracted | 85.193953 | 339 | 339 | 339 | false | 15b5d79978d8 | train | |
afdb_structure_fot_E9Q8T2_a995efdb93ec453e | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q8T2 | PRD15_MOUSE | PR domain zinc finger protein 15 (EC 2.1.1.-) (PR domain-containing protein 15) | "MCPPTIWEKGGQVGARWSLRAPEVSAMAEDGSEEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSSLPSNLEIRRLDDGAEGVFAVTQLVKRT(...TRUNCATED) | "Sequence-specific DNA-binding transcriptional regulator. Plays a role as a molecular node in a tran(...TRUNCATED) | "UniProt E9Q8T2 structure-function record. Protein: PR domain zinc finger protein 15 (EC 2.1.1.-) (P(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q8T2-F1-model_v6.cif\", (...TRUNCATED) | [[-2.7920000553131104,-3.563999891281128,4.436999797821045],[-5.9120001792907715,-3.86899995803833,2(...TRUNCATED) | [[-2.7920000553131104,-3.563999891281128,4.436999797821045],[-5.9120001792907715,-3.86899995803833,2(...TRUNCATED) | [[[-2.364000082015991,-2.3499999046325684,5.176000118255615],[-2.7920000553131104,-3.563999891281128(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [29.14,31.45,36.28,31.3,37.72,32.94,31.72,30.42,32.0,31.8,30.89,38.66,33.16,36.38,36.44,32.81,34.09,(...TRUNCATED) | ["MET","CYS","PRO","PRO","THR","ILE","TRP","GLU","LYS","GLY","GLY","GLN","VAL","GLY","ALA","ARG","TR(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q8T2-F1-model_v6.cif | "ddafdfdddddddddddddddppddddddddddpqdwdadpvvrdtdspddpvpdddddddddpdqfqavvqddpqwdwdqdpvraififgqakdaffd(...TRUNCATED) | true | foldseek_3di_extracted | 56.523809 | 512 | 512 | 1,174 | true | a995efdb93ec | train | |
afdb_structure_fot_E9Q956_df42818a0d49d1be | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q956 | MCMD2_MOUSE | Minichromosome maintenance domain-containing protein 2 (MCM domain-containing protein 2) | "METLQMKEAALVYLDRSGGLQKFIDDCKSYNDSKQSYAVYRFSILIDPCDVVELDADLGNHILHHPLKAARVFQSVCFVAVKTLSLIGQLQTETQINIV(...TRUNCATED) | Plays an important role in meiotic recombination and associated DNA double-strand break repair. | "UniProt E9Q956 structure-function record. Protein: Minichromosome maintenance domain-containing pro(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q956-F1-model_v6.cif\", (...TRUNCATED) | [[20.042999267578125,17.801000595092773,-41.92599868774414],[17.58300018310547,15.911999702453613,-3(...TRUNCATED) | [[20.042999267578125,17.801000595092773,-41.92599868774414],[17.58300018310547,15.911999702453613,-3(...TRUNCATED) | [[[21.025999069213867,16.711999893188477,-42.108001708984375],[20.042999267578125,17.801000595092773(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [51.5,61.66,79.62,87.69,90.0,91.31,93.0,93.62,94.12,94.56,94.5,94.94,95.25,94.19,93.31,92.62,91.19,8(...TRUNCATED) | ["MET","GLU","THR","LEU","GLN","MET","LYS","GLU","ALA","ALA","LEU","VAL","TYR","LEU","ASP","ARG","SE(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q956-F1-model_v6.cif | "dvlvvllvllvvvcvvvvvvvvllvllqvqvvvvdqaladedegedelvvscvspvvlscccfqpvvvsqvsvlvssvvvcvvvvshvndddslrygyf(...TRUNCATED) | true | foldseek_3di_extracted | 85.634043 | 512 | 512 | 681 | true | df42818a0d49 | train | |
afdb_structure_fot_E9Q9A9_1d058f4a4e09be98 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9A9 | OAS2_MOUSE | "2'-5'-oligoadenylate synthase 2 ((2-5')oligo(A) synthase 2) (2-5A synthase 2) (EC 2.7.7.84) (2',5'-(...TRUNCATED) | "MGNWLTGNWSSDRSSGYSSGWSPGGSSGVPSGPVHKLEKSIQANLTPNENCLKQIAVSSVPSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQIP(...TRUNCATED) | "Interferon-induced, dsRNA-activated antiviral enzyme which plays a critical role in cellular innate(...TRUNCATED) | "UniProt E9Q9A9 structure-function record. Protein: 2'-5'-oligoadenylate synthase 2 ((2-5')oligo(A) (...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9A9-F1-model_v6.cif\", (...TRUNCATED) | [[0.3100000023841858,55.68199920654297,-10.477999687194824],[-3.2170000076293945,54.737998962402344,(...TRUNCATED) | [[0.3100000023841858,55.68199920654297,-10.477999687194824],[-3.2170000076293945,54.737998962402344,(...TRUNCATED) | [[[1.5119999647140503,55.29899978637695,-9.706999778747559],[0.3100000023841858,55.68199920654297,-1(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [29.38,31.3,30.33,30.48,31.75,28.86,28.05,25.55,28.52,26.41,29.44,30.91,29.39,30.89,28.7,31.08,30.67(...TRUNCATED) | ["MET","GLY","ASN","TRP","LEU","THR","GLY","ASN","TRP","SER","SER","ASP","ARG","SER","SER","GLY","TY(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9A9-F1-model_v6.cif | "ddddddddddddddddddddddddddpddpppdppvvqvvvvvvpppppppppddqllqaflvclvvclvvfwaadpvqlvvlvvvvvvlvvlvvvpaq(...TRUNCATED) | true | foldseek_3di_extracted | 84.523887 | 512 | 512 | 742 | true | 1d058f4a4e09 | train | |
afdb_structure_fot_E9Q9D5_a653c3323b8883f3 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9D5 | RBL2A_MOUSE | Rab-like protein 2A | "MAGDRNRHCELEQEKYDTHENVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIM(...TRUNCATED) | "Plays an essential role in male fertility, sperm intra-flagellar transport, and tail assembly. Bind(...TRUNCATED) | "UniProt E9Q9D5 structure-function record. Protein: Rab-like protein 2A. Function: Plays an essentia(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9D5-F1-model_v6.cif\", (...TRUNCATED) | [[-33.832000732421875,24.854000091552734,-2.8399999141693115],[-30.73699951171875,23.320999145507812(...TRUNCATED) | [[-33.832000732421875,24.854000091552734,-2.8399999141693115],[-30.73699951171875,23.320999145507812(...TRUNCATED) | [[[-33.76499938964844,26.229999542236328,-2.2929999828338623],[-33.832000732421875,24.85400009155273(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [40.78,46.34,45.12,46.28,44.25,44.28,37.22,39.91,38.03,39.59,37.66,41.44,40.19,42.72,41.94,46.38,45.(...TRUNCATED) | ["MET","ALA","GLY","ASP","ARG","ASN","ARG","HIS","CYS","GLU","LEU","GLU","GLN","GLU","LYS","TYR","AS(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9D5-F1-model_v6.cif | "dpppvvvvvvvvvvvppdlqeaeeeedfdaplcqvllvcllcvvdfdwdqpppdrwiwtwdwdadpndihiytythchpvvvpvdddlvslqrhleyey(...TRUNCATED) | true | foldseek_3di_extracted | 80.743767 | 223 | 223 | 223 | false | a653c3323b88 | train | |
afdb_structure_fot_E9Q9F6_a3ee650e11e650fd | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9F6 | CTSRD_MOUSE | "Cation channel sperm-associated auxiliary subunit delta (CatSper-delta) (CatSperdelta) (Transmembra(...TRUNCATED) | "MLVLMLAAAVATMVRAHTLCRVHTVRTGKVFKSNIQLQGDPLFYAFPNTFVLKNVCKADISVYLGQKVFLTIDNFESSLLPLTVPKSLAVGVPSITSAH(...TRUNCATED) | "Auxiliary component of the CatSper complex, a complex involved in sperm cell hyperactivation. Sperm(...TRUNCATED) | "UniProt E9Q9F6 structure-function record. Protein: Cation channel sperm-associated auxiliary subuni(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9F6-F1-model_v6.cif\", (...TRUNCATED) | [[-39.63800048828125,-47.63399887084961,49.56700134277344],[-40.816001892089844,-46.784000396728516,(...TRUNCATED) | [[-39.63800048828125,-47.63399887084961,49.56700134277344],[-40.816001892089844,-46.784000396728516,(...TRUNCATED) | [[[-40.93299865722656,-47.375999450683594,50.23699951171875],[-39.63800048828125,-47.63399887084961,(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [44.41,47.06,49.91,50.38,49.44,49.44,48.84,47.75,45.84,42.94,40.81,38.47,39.62,39.81,40.38,51.69,61.(...TRUNCATED) | ["MET","LEU","VAL","LEU","MET","LEU","ALA","ALA","ALA","VAL","ALA","THR","MET","VAL","ARG","ALA","HI(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9F6-F1-model_v6.cif | "dvpvvvvvvvvppvpppflwdkdwaedpppddlppdpaaafaaepdlfwewaadqqqlqwiwiharfiftgngvqnywtftdhdhcvvvlpanywlewd(...TRUNCATED) | true | foldseek_3di_extracted | 88.828984 | 512 | 512 | 805 | true | a3ee650e11e6 | train | |
afdb_structure_fot_E9Q9U0_c032fb9c64000961 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9U0 | U17PB_MOUSE | "Ubiquitin carboxyl-terminal hydrolase 17-like protein B (USP17-B) (EC 3.4.19.12) (Deubiquitinating (...TRUNCATED) | "MVVALSFPEADPAMSPPSAPELHQDEAQVVEELAANGKHSLSWESPQGPGCGLQNTGNSCYLNAALQCLTHTPPLADYMLSQEHSQTCCSPEGCKMCAM(...TRUNCATED) | "Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate differ(...TRUNCATED) | "UniProt E9Q9U0 structure-function record. Protein: Ubiquitin carboxyl-terminal hydrolase 17-like pr(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9U0-F1-model_v6.cif\", (...TRUNCATED) | [[31.900999069213867,-30.711000442504883,8.838000297546387],[31.2189998626709,-28.468000411987305,5.(...TRUNCATED) | [[31.900999069213867,-30.711000442504883,8.838000297546387],[31.2189998626709,-28.468000411987305,5.(...TRUNCATED) | [[[32.53499984741211,-29.898000717163086,9.895999908447266],[31.900999069213867,-30.711000442504883,(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [33.81,28.41,29.58,29.22,31.84,33.56,34.09,35.16,32.69,39.75,34.38,36.19,36.19,32.59,35.19,36.97,37.(...TRUNCATED) | ["MET","VAL","VAL","ALA","LEU","SER","PHE","PRO","GLU","ALA","ASP","PRO","ALA","MET","SER","PRO","PR(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9U0-F1-model_v6.cif | "dddddddddddppdddpdddpppdcpvvvvvvlvplddfdlaapddfdqfffeadqalcqlvrqllsvqlqrrrslrvlqvcplvvqqpclvlqlsnls(...TRUNCATED) | true | foldseek_3di_extracted | 70.627179 | 468 | 468 | 468 | false | c032fb9c6400 | train | |
afdb_structure_fot_E9Q9W4_ab45f557955f37e9 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9W4 | S27A6_MOUSE | "Long-chain fatty acid transport protein 6 (FATP-6) (Fatty acid transport protein 6) (Arachidonate--(...TRUNCATED) | "MLLSWLTGLGAGLLSLHFLQKLLFPYFWDDFWYLLKVVRYGIQMEMYKLRGELVTVLDKFLSHTRKQPRKAFIIYEGDVYTYEDVDKRSNRIAHALLNH(...TRUNCATED) | "Mediates the import of long-chain fatty acids (LCFA) into the cell by facilitating their transport (...TRUNCATED) | "UniProt E9Q9W4 structure-function record. Protein: Long-chain fatty acid transport protein 6 (FATP-(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9W4-F1-model_v6.cif\", (...TRUNCATED) | [[-50.62799835205078,-26.91200065612793,-20.243000030517578],[-48.152000427246094,-24.26899909973144(...TRUNCATED) | [[-50.62799835205078,-26.91200065612793,-20.243000030517578],[-48.152000427246094,-24.26899909973144(...TRUNCATED) | [[[-51.95800018310547,-26.275999069213867,-20.391000747680664],[-50.62799835205078,-26.9120006561279(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [70.75,78.81,79.5,82.38,89.44,88.12,89.5,91.25,92.06,92.06,92.25,94.31,93.56,92.25,92.38,92.62,89.38(...TRUNCATED) | ["MET","LEU","LEU","SER","TRP","LEU","THR","GLY","LEU","GLY","ALA","GLY","LEU","LEU","SER","LEU","HI(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9W4-F1-model_v6.cif | "dvvvvvvvvvvvvvvvvvvccvvpvcpvlvvvllvvvvvvvvvvvvcvvvvhddfllnllvvlcvvpvqdfaedepndtqgsvnlllllqlllqlcvpp(...TRUNCATED) | true | foldseek_3di_extracted | 91.601035 | 512 | 512 | 619 | true | ab45f557955f | train | |
afdb_structure_fot_E9Q9W7_23ff302559d09566 | toricblm_afdb_structure_fot | structure_function_fot_coordinate_training | E9Q9W7 | PDZD7_MOUSE | PDZ domain-containing protein 7 | "MARGFTVGFDPLGLGELSSGSLSSVSSRGHLGSDSGSTATRYLLRKQQRLLNGPSRGIRASSPMGRVILINSPIEANSDESDIIHAVRVEKSPSGRLGF(...TRUNCATED) | "In cochlear developing hair cells, essential in organizing the USH2 complex at stereocilia ankle li(...TRUNCATED) | "UniProt E9Q9W7 structure-function record. Protein: PDZ domain-containing protein 7. Function: In co(...TRUNCATED) | "{\"edges\": [{\"id\": \"protein_has_sequence\", \"source\": \"protein\", \"target\": \"sequence\", (...TRUNCATED) | "{\"edges\": [{\"source\": \"root\", \"target\": \"geometry\", \"type\": \"branch\"}, {\"source\": \(...TRUNCATED) | "{\"bcif_url\": \"\", \"cif_url\": \"https://alphafold.ebi.ac.uk/files/AF-E9Q9W7-F1-model_v6.cif\", (...TRUNCATED) | [[28.275999069213867,34.70600128173828,-71.1969985961914],[29.90399932861328,31.892000198364258,-70.(...TRUNCATED) | [[28.275999069213867,34.70600128173828,-71.1969985961914],[29.90399932861328,31.892000198364258,-70.(...TRUNCATED) | [[[26.851999282836914,34.68000030517578,-71.60700225830078],[28.275999069213867,34.70600128173828,-7(...TRUNCATED) | [true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true,true(...TRUNCATED) | [38.31,38.19,39.19,40.16,43.22,41.22,41.47,38.59,38.12,36.28,47.28,38.28,38.31,38.59,40.5,40.94,39.9(...TRUNCATED) | ["MET","ALA","ARG","GLY","PHE","THR","VAL","GLY","PHE","ASP","PRO","LEU","GLY","LEU","GLY","GLU","LE(...TRUNCATED) | [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,(...TRUNCATED) | ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"(...TRUNCATED) | AFDB | false | https://alphafold.ebi.ac.uk/files/AF-E9Q9W7-F1-model_v6.cif | "ddddddddddddydddddddddddddddddddddddddddpppvvvvvvvpdddddddddddddddddpppdpppdpdppwpdwdwfkffadpqldrqw(...TRUNCATED) | true | foldseek_3di_extracted | 57.673047 | 512 | 512 | 1,021 | true | 23ff302559d0 | train |
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ToricBLM FoT Full Graph Dataset
This directory contains the local ToricGT/ToricBLM graph/FoT training dataset prepared for full graph-in/graph-out biomedical and scientific reasoning runs.
The curated training streams are:
toricblm_nonprotein_fot_splits/v2_parallel: split-safe DNA, RNA, and small-molecule graph/FoT records with ConvexTok DAGs and training views.uniprot_fot/splits/protrek_v2: ProTrek-derived protein sequence/function split records.uniprot_fot/structures: coordinate-bearing AFDB, PDB modal, and PubChem3D records for structure-flow training. Missing structures are not imputed.toricblm_late_mixed_fot_structure: late-stage Codex 5.5 ToT/FoT and structure-association training shards.
Raw upstream data under uniprot_fot/raw_sources is represented locally by
symlinks and is excluded from Hub upload. Training uses the curated Parquet
records, manifests, and schema sidecars in this directory, not raw upstream
source paths.
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