Datasets:

BenchmarkDatasets
/

true_betalactamase_complete

license: cdla-permissive-2.0
task_categories:
  - tabular-regression
pretty_name: true_betalactamase_complete
tags:
  - tabular
  - proteomics
  - regression
  - Biomedical
  - Benchmark
  - cds-seq
configs:
  - config_name: true_betalactamase_complete
    data_files:
      - split: train
        path: data/train.parquet
      - split: validation
        path: data/val.parquet
      - split: test
        path: data/test.parquet
dataset_info:
  description: >-
    Sequence-level regression task predicting the fitness of all single codon
    substitutions in the TEM-1 Beta-lactamase gene. Labels measure the ability
    to confer ampicillin resistance. The Complete dataset contains all coding
    sequences (CDS) except those degenerate with any test-set CDS, using raw CDS
    fitness values. Train and test sets are derived from Firnberg et al.
    Features are mean-pooled ESM-2 (esm2_t12_35M_UR50D) sequence embeddings.