| published_gse,study_title,n_samples,organisms,platforms,assay_names,organs,diseases,disease_statuses,n_with_image,pubmed_ids,split |
| GSE111672,Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas,8,Homo sapiens,ST (legacy),ST (legacy),pancreas,pancreatic ductal adenocarcinoma,disease,0,31932730,val |
| GSE120374,Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis,317,Mus musculus,ST (legacy),ST (legacy),spinal cord,amyotrophic lateral sclerosis;hereditary motor neuron disease;lateral sclerosis,normal;disease,0,,train |
| GSE130682,High-density spatial transcriptomics arrays for in situ tissue profiling,1,Mus musculus,Other,HDST,brain,,normal,1,31501547,train |
| GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,4,Homo sapiens,ST (legacy),ST (legacy),heart,cardiomyopathy |
| GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,11,Mus musculus,DBiT-seq,DBiT-seq,embryo (whole),,normal,0,33188776,train |
| GSE144239,Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST],16,Homo sapiens,ST (legacy) |
| GSE147747,Molecular Atlas of the Adult Mouse Brain,75,Mus musculus,ST (legacy),ST (legacy),brain,,normal,75,32637622,train |
| GSE148612,Neuroinflammatory astrocyte subtypes in the mouse brain,6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,34413515,test |
| GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,8,Mus musculus,Visium,Visium,brain,,normal,4,35210624,train |
| GSE153859,The spatial landscape of gene expression isoforms in tissue sections,3,Mus musculus,Visium,Visium,brain,,normal,3,36928528,train |
| GSE154107,The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline.,1,Mus musculus,Visium,Visium,kidney,,perturbation,1,33448928,train |
| GSE155121,The Single-cell and spatial transcriptional landscape of human development,8,Homo sapiens,Visium,Visium,embryo (whole),,normal,0,37192616,train |
| GSE156862,Spatial transcriptome of FFPE sample by DBiT-seq,5,Mus musculus,DBiT-seq,DBiT-seq,embryo (whole) |
| GSE158328,Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution - Spatial Transcriptomics,8,Homo sapiens,Visium,Visium,colon |
| GSE158450,"Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development",1,Mus musculus,Visium,Visium,brain,,normal,1,33469025;35301264;35604081;36593406,train |
| GSE158730,NFI transcription factors regulate zonal olfactory receptor expression,4,Mus musculus,Visium,Visium,head and neck |
| GSE159709,Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface,3,Danio rerio,Visium,Visium,skin,melanoma,disease,0,34725363,train |
| GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]",4,Mus musculus,Visium,Visium,other |
| GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,3,Mus musculus,Visium,Visium,skeletal muscle,,perturbation,3,34773081,train |
| GSE161369,Pancreatic Cancer Datasets,8,Homo sapiens,Xenium,Xenium,pancreas,malignant pancreatic neoplasm,disease,7,42649389,test |
| GSE163631,Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance,5,Mus musculus,Visium,Visium,heart,myocardial infarction,disease;perturbation;normal,0,34489413,train |
| GSE165141,Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver,12,Mus musculus,ST (legacy),ST (legacy),liver,,normal,0,34857782,train |
| GSE166948,Interleukin-17 governs hypoxic adaptation of injured epithelium [spatial transcriptomics],6,Mus musculus,Visium,Visium,skin,,normal;perturbation;disease,6,35709248,val |
| GSE169012,Spatial transcriptome analysis (Slide-seq2) of mouse main olfactory bulb,40,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,35314823;40768336,train |
| GSE169749,10X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis,2,Mus musculus,Visium,Visium,colon,colitis,normal;disease,2,35149721,train |
| GSE171351,"A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer",4,Homo sapiens,Visium,Visium,bladder,cancer,disease,4,34385456;37344596,val |
| GSE171406,Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury,3,Homo sapiens |
| GSE172416,Cell type inference in human lung tissue by domain adaptation of single-cell and spatial transcriptomic data,2,Homo sapiens,Visium,Visium,lung,,normal,2,35191503,val |
| GSE173651,Single-cell and spatial transcriptomic analysis of homeostatic adult human skin,6,Homo sapiens,Visium,Visium,skin,,normal,6,41872488,train |
| GSE174265,Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.,7,Mus musculus,Visium,Visium,brain,,disease;perturbation,0,36170369,train |
| GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,4,Mus musculus,Visium,Visium,head and neck,,perturbation,4,34663698,train |
| GSE174321,Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome,4,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease,4,38036733,train |
| GSE174647,Identification of early neurodegenerative pathways in progressive multiple sclerosis,181,Homo sapiens,ST (legacy),ST (legacy),brain,multiple sclerosis,disease,176,35726057,test |
| GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,24,Homo sapiens,Visium,Visium,kidney,renal cell adenocarcinoma,disease,24,35231421,train |
| GSE176092,Spatiotemporal transcriptome analysis reveals critical roles for mechano-sensing genes at the border zone in remodeling after myocardial infarction,14,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,0,,test |
| GSE178221,SpotClean adjusts for spot swapping in spatial transcriptomics data,3,Homo sapiens,Visium,Visium,colon;small intestine;heart,,normal,3,35624112,train |
| GSE178361,Human distal lung maps and lineage hierarchies reveal a bipotent progenitor [Spatial transcriptomics],2,Homo sapiens,Visium,Visium,airway;lung,,normal,2,35355018,train |
| GSE178636,Spatiotemporal transcriptomes of mouse embryo,4,Mus musculus,Visium,Visium,embryo (whole),,normal,4,36857617,train |
| GSE178758,Integrated spatial multi-omics reveals fibroblast fate during tissue repair,4,Mus musculus,Visium,Visium,skin,,normal;perturbation,4,34620713,train |
| GSE179572,Spatial transcriptomics of human brain metastases,6,Homo sapiens,Visium,Visium,brain,brain neoplasm;lung adenocarcinoma;melanoma;nonpapillary renal cell carcinoma;breast carcinoma,disease,6,35584630;35707680,train |
| GSE180682,Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA,8,Mus musculus,Visium,Visium,other,,perturbation,8,35616636,train |
| GSE181300,Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution,8,Homo sapiens,Visium,Visium,head and neck,head and neck squamous cell carcinoma,disease,8,36002186,val |
| GSE182127,Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain,7,Mus musculus,Visium,Visium,brain,,normal;perturbation,7,34793930,train |
| GSE182208,Endothelial Phospholipase C gamma2 Improves Outcomes of Diabetic Ischemic Limb Rescue Following VEGF Therapy,1,Homo sapiens,Visium,Visium,skin,,normal,1,35192691;42552235,val |
| GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,4,Homo sapiens,Visium,Visium,other,neoplasm,disease,4,34759321,val |
| GSE182939,Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model,5,Mus musculus,Visium,Visium,kidney,acute kidney injury,perturbation;disease,5,34853151,train |
| GSE183279,An atlas of healthy and injured cell states and niches in the human kidney,44,Homo sapiens,Slide-seq,Slide-seq,kidney,,normal,0,37468583;39691368;39916957,train |
| GSE183456,Spatial localization with Spatial Transcriptomics for an atlas of healthy and injured cell states and niches in the human kidney [Visium ST],22,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus;acute kidney injury,normal;disease,22,37468583;39691368,train |
| GSE184369,The neurons that restore walking after paralysis [spatial transcriptomics],15,Mus musculus,Visium,Visium,spinal cord,,normal,15,36352232,train |
| GSE184371,The neurons that restore walking after paralysis,1,Mus musculus,Visium,Visium,spinal cord,,normal,0,36352232,train |
| GSE184384,Epithelial Plasticity and Innate Immune Activation Promote Lung Tissue Remodeling following Respiratory Viral Infection.,2,Mus musculus,Visium,Visium,lung,viral infectious disease,disease,2,37726288,train |
| GSE184510,Spatial transcriptomics: The effect of consecutive slices data integration on accurate cell type annotation and clustering,8,Homo sapiens,Visium,Visium,brain,,normal;not stated,7,37081484,train |
| GSE185386,Melanoma Brain Metastasis Atlas,15,Homo sapiens,Slide-seq,Slide-seqV2,brain;other,melanoma,disease,0,35803246,train |
| GSE185477,"Single-Cell, Single-Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity",1,Homo sapiens,Visium,Visium,liver,,normal,1,34792289,train |
| GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,14,Homo sapiens;Mus musculus,Visium,Visium,kidney;lung;brain,,normal,14,36776149,train |
| GSE186097,Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain,2,Mus musculus,Other,Pixel-seq,brain,,normal,0,36368323,train |
| GSE186290,Spatial transcriptome analysis of gastric cancer which GAN-KP transplanted C57BL/6J mouse,1,Mus musculus,Visium,Visium,stomach,gastric cancer,disease,1,34931404,train |
| GSE186818,Spatial transcriptome analysis of brain region in grass puffer (Takifugu alboplumbeus),1,Takifugu alboplumbeus,Visium,Visium,brain,,normal,1,36306789,train |
| GSE188257,Spatial transcriptomics of the ageing ovary,4,Mus musculus,Visium,Visium,ovary,,normal,4,35996587,train |
| GSE188888,"Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]",4,Mus musculus,Visium,Visium,heart,,perturbation,4,35050211,val |
| GSE189042,Spatial transcriptome analysis reveals the lymph node atlas of breast cancer metastases,1,Homo sapiens,Visium,Visium,lymph node,luminal B breast carcinoma,disease,1,,train |
| GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,16,Homo sapiens,Visium,Visium,colon,ulcerative colitis;colitis,disease;normal,16,38744246,train |
| GSE189487,Spatiotemporal transcriptional atlas of lung adenocarcinoma from adenocarcinoma in situ to invasive carcinoma [ST],6,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma;invasive carcinoma;adenocarcinoma in situ,disease,0,36434043,train |
| GSE190094,High Resolution Slide-seqV2 Spatial Transcriptomics Enables Discovery of Disease-Specific Cell Neighborhoods and Pathways,84,Mus musculus,Slide-seq,Slide-seqV2,kidney,diabetic kidney disease;diabetes mellitus,normal;disease,0,35372810,train |
| GSE190595,10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient/deficient mice,2,Mus musculus,Visium,Visium,colon,,normal;perturbation,2,35149721,train |
| GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),4,Homo sapiens,Visium,Visium,lymph node,invasive ductal breast carcinoma;lymph node neoplasm,disease,4,36357424,train |
| GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,8,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease;normal,8,,train |
| GSE192402,"Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications",2,Homo sapiens,Slide-seq,Slide-seqV2,other,melanoma,disease,0,36624340,train |
| GSE192460,Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data],21,Homo sapiens,Visium,Visium,skin,sarcoidosis,disease,0,36750099,val |
| GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,15,Mus musculus;Homo sapiens,Visium,Visium,liver,,normal;disease,15,35021063;36304458,train |
| GSE193107,Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq],8,Mus musculus,Visium,Visium,brain,,normal,8,38372175,train |
| GSE193460,Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma,4,Mus musculus,Visium,Visium,lung,lung adenocarcinoma,disease,3,35290801,train |
| GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,11,Homo sapiens,Visium,Visium,brain,malignant glioma;glioblastoma,disease,11,36823172;40483536,train |
| GSE194338,Excitatory SST neurons in the medial paralemniscal nucleus control repetitive self-grooming and encode reward,1,Mus musculus,Visium,Visium,brain,,perturbation,1,,train |
| GSE195575,mousemodel_Heptablastoma spatial transcriptomics,6,Mus musculus,Visium,Visium,liver,hepatoblastoma,disease,6,37414763,test |
| GSE195598,Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis,4,Mus musculus,Visium,Visium,lymph node,arthritic joint disease,normal;disease,4,37691918,train |
| GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,14,Homo sapiens,Visium,Visium,brain,ependymoma,disease,14,36215273,val |
| GSE196208,Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features in Ductal Carcinoma In Situ of the Breast,1,Homo sapiens,Visium,Visium,breast,ductal breast carcinoma in situ,disease,1,35852797,train |
| GSE196506,Spatial Transcriptomics-based Identification of Molecular Markers for Nanomedicine Distribution in Tumor Tissue,1,Mus musculus,Visium,Visium,breast,breast cancer,disease,0,36180396,train |
| GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],19,Homo sapiens,Visium,Visium,skin,atopic eczema,disease;normal,19,37312623,train |
| GSE197150,multiplexed RNA imaging of human forebrain organoids from typical and autism subjects [MERFISH],71,Homo sapiens,MERFISH/MERSCOPE,MERFISH,brain,autism,normal;disease,0,42288509,train |
| GSE197317,Single cell transcriptomic and spatial landscapes of the developing human pancreas - spatial transcriptomics,6,Homo sapiens,Visium,Visium,pancreas,,normal,6,36513063,test |
| GSE198012,Obesity disrupts innate-adaptive immune network patterning in adipose tissue,4,Mus musculus,Visium,Visium,adipose tissue,obesity disorder,normal;disease,0,37651193,val |
| GSE198128,Spatiotemporal transcriptomes of orchid flowers,3,Phalaenopsis aphrodite,Visium,Visium,plant,,normal,3,36095130,train |
| GSE198353,Integration of whole transcriptome spatial profiling with protein markers,3,Mus musculus,Visium,Visium,spleen;breast,breast cancer,normal;disease,3,36593397,train |
| GSE198745,Single-cell and spatially resolved analysis uncovers cell heterogeneity of breast cancer,1,Homo sapiens,Visium,Visium,breast,breast cancer,disease,1,35241110,train |
| GSE199348,Molecular and cellular characterization of planarian stem cell microenvironments,4,Schmidtea mediterranea,Slide-seq,Slide-seqV2,other,,perturbation,0,,train |
| GSE199659,"Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models",4,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,normal;disease,4,37582915,val |
| GSE200310,Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues,2,Homo sapiens,Visium,Visium,head and neck,nasopharyngeal carcinoma,disease,2,37024479,train |
| GSE200720,Spatial RNA-sequencing of day7 and day 21 post-LCMV Cl13 infection following transient CD4+ T cell depletion (Visium),8,Mus musculus,Visium,Visium,spleen,infectious disease,disease,8,36450262,val |
| GSE200751,MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts.,2,Mus musculus,Visium,Visium,skin,melanoma;cancer,disease,2,37605008,train |
| GSE201610,Spatial RNA sequencing of mouses brain slices following spatial object recognition training,6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,37773230,train |
| GSE202011,Spatial transcriptomics stratifies psoriatic disease by emergent cellular ecosystems,30,Homo sapiens,Visium,Visium,skin,psoriasis;psoriatic arthritis,disease;normal,29,37267384;41743834,train |
| GSE202322,Spatial sequencing of young and aged lungs following influenza A virus infection,6,Mus musculus,Visium,Visium,lung,influenza,disease,6,37852965,test |
| GSE202623,Spatial Transcriptomics correlated Electron Microscopy [MERFISH],3,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal,0,37433806,test |
| GSE203424,INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease,12,Mus musculus,Visium,Visium,brain,Alzheimer disease,perturbation;disease;normal,12,36448627,train |
| GSE203552,Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma,4,Homo sapiens,Visium,Visium,brain,primary central nervous system lymphoma,disease,4,36153593,test |
| GSE203612,Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment,12,Homo sapiens,Visium,Visium,breast;stomach;liver;ovary;pancreas;uterus;other,breast carcinoma;cancer;hepatocellular carcinoma;ovarian carcinoma;pancreatic ductal adenocarcinoma;endometrial carcinoma;melanoma,disease,12,35931863,train |
| GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],4,Mus musculus,DBiT-seq,DBiT-seq,brain;embryo (whole),,normal,0,36922587;39870864,train |
| GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,7,Homo sapiens;Mus musculus,DBiT-seq,DBiT-seq,brain,,normal,0,36922587;39870864,train |
| GSE205307,Single-cell RNA sequencing reveals myeloid and T cell co-stimulation mediated by IL-7 anti-cancer immunotherapy,2,Mus musculus,Visium,Visium,unknown,cancer,disease,2,38424167,test |
| GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,14,Mus musculus;Canis lupus familiaris,Visium,Visium,skeletal muscle,,perturbation,6,,val |
| GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,17,Homo sapiens,Visium;ST (legacy),Visium;ST (legacy),airway;stomach,nasopharyngeal carcinoma;gastric cancer;carcinoma;epithelial neoplasm,disease,14,39231979,train |
| GSE206306,A Spatial Transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease,7,Homo sapiens,Visium,Visium,kidney,,normal;disease,7,37468493,train |
| GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,4,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver,disease,4,37157887,train |
| GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,8,Homo sapiens,Visium,Visium,oral cavity,inflammatory disease,normal;disease,8,36648332,train |
| GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,4,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,4,38129410,train |
| GSE206790,Profibrotic subsets of SPP1+ macrophages and POSTN+ fibroblasts contribute to fibrotic scarring in acne keloidalis,1,Homo sapiens,Visium,Visium,skin,acne,disease,1,38218364,train |
| GSE207205,Multimodal human thymic profiling reveals trajectories and cellular milieu for T agonist selection [Spatial transcriptomics],8,Homo sapiens,Visium,Visium,thymus,,normal,8,36741401,train |
| GSE207546,Choroid plexus mast cells drive tumor-associated hydrocephalus,3,Mus musculus,Visium,Visium,brain,neoplasm;hydrocephalus,disease,3,38056463,train |
| GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,18,Mus musculus,DBiT-seq,DBiT-seq,spleen;heart;liver;kidney;brain;pancreas,,normal,0,36934108,train |
| GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,12,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,12,37596273,train |
| GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,26,Homo sapiens,Visium,Visium,brain,multiple sclerosis,disease;normal,26,39501035,test |
| GSE209583,"Spatial transcriptomics analysis of wild type, 5XFAD mice, 5XFAD mice treated with either vehicle or human neural stem cells (hNSC)",14,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease;normal,14,38155736,train |
| GSE210041,Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma [spatial transcriptomics],2,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,2,37335139,train |
| GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,4,Mus musculus,Visium,Visium,eye,,normal;disease,4,36341342,train |
| GSE210616,Spatial transcriptomics of triple negative breast cancer,43,Homo sapiens,Visium,Visium,breast,triple-negative breast carcinoma,disease,43,36283023,train |
| GSE210637,"ER, mitochondria and ISR regulation by mt-HSP70 and ATF5 upon procollagen misfolding (proximal tibia srRNASeq)",6,Mus musculus,Visium,Visium,bone,,disease;perturbation,6,35988140,val |
| GSE210738,Spatial transcriptomics revealing host-microbe interactions,2,Mus musculus,Visium,Visium,small intestine;colon,,normal,0,,test |
| GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,4,Oryctolagus cuniculus,Visium,Visium,skeletal muscle,,perturbation;disease;normal,4,36195913,train |
| GSE211785,Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.,4,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;chronic kidney disease,disease,4,38217002;38514613;39048792;40796935;41376591,train |
| GSE211895,Assessment of Spatial Genomics for Oncology Discovery,29,Rattus norvegicus;Homo sapiens;Mus musculus,Visium,Visium,colon;pancreas;other,malignant pancreatic neoplasm;neoplasm,not stated;normal;disease,29,36452860,val |
| GSE211956,Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments,8,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,8,38570491,train |
| GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,36871219,train |
| GSE212526,Spatial transcriptomics analysis of soft tissue sarcomas.,4,Homo sapiens,Visium,Visium,other,undifferentiated pleomorphic sarcoma;leiomyosarcoma,disease,4,38429415,train |
| GSE212706,Multiomic analysis reveals conservation of cancer associated fibroblast phenotypes across species and tissue of origin [spatial trascriptomics],6,Mus musculus,Visium,Visium,breast,breast neoplasm;cancer,disease;normal,6,,train |
| GSE212903,Spatial transcriptomics of the mouse brain across three age groups,6,Mus musculus,Visium,Visium,brain,,normal,6,37591239,train |
| GSE213216,A single-cell transcriptomic analysis of endometriosis,2,Homo sapiens,Visium,Visium,other;peritoneum,endometriosis,disease,2,36624343;38370978,train |
| GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,18,Mus musculus;Homo sapiens,DBiT-seq,DBiT-seq,spleen;colon;small intestine;kidney;tonsil;thymus;skin;brain,glioblastoma,normal;disease,0,36823353;39095360,train |
| GSE213286,Craters on the melanoma surface serve as hubs for CD8+ T cells,1,Danio rerio,Slide-seq,Slide-seq,skin,melanoma,disease,0,41109214,train |
| GSE213306,Spatial transcriptomic analysis of human oligodendrocyte development across gestational weeks 10 to 24,8,Homo sapiens,Visium,Visium,brain,,normal,0,41509247,train |
| GSE213388,Periportal macrophages protect against commensal-driven liver inflammation [spatial transcriptomics],4,Mus musculus,Visium,Visium,liver,,normal,4,38658756,val |
| GSE213666,Multi-omics profiling visualizes dynamics of cardiac development and functions,1,Mus musculus,Visium,Visium,heart,,normal,1,36577384,train |
| GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,15,Homo sapiens,Visium,Visium,breast,breast cancer,normal;disease,15,37813278,train |
| GSE213699,Spatial transcriptomics of ovarian cancer tumors,8,Homo sapiens,Visium,Visium,ovary;peritoneum,fallopian tube carcinoma;ovarian cancer;ovarian carcinoma;carcinoma;high grade malignant neoplasm,disease,8,36249907,train |
| GSE214138,Spatially resolved multi-omic profiling of human hippocampus reveals region-specific alterations in major depressive disorder [RNA-seq],13,Homo sapiens,DBiT-seq,DBiT-seq,brain,major depressive disorder,normal;disease,0,,train |
| GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,19,Mus musculus,Visium,Visium,brain,brain injury,disease;normal;perturbation,19,36825001,train |
| GSE214363,Spatial transcriptomics data of GAN-KP tumor treated with regorafenib,2,Mus musculus,Visium,Visium,other,gastric cancer,disease,2,36543251,train |
| GSE214571,Spatial transcriptomics reveals functional compartmentalization of estrogen receptor positive (ER+) breast cancer,4,Homo sapiens,Visium,Visium,breast,estrogen-receptor positive breast cancer,disease,4,38282415,train |
| GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,14,Mus musculus;Homo sapiens,Visium,Visium,heart,myocardial infarction,disease,14,39086770,train |
| GSE214989,Spatial transcriptomics profiling of the developing mouse embryo,1,Mus musculus,Visium,Visium,embryo (whole),,normal,1,36604544,train |
| GSE215305,Muscle injury induces a transient senescence-like state that is required for myofiber growth during muscle regeneration [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,disease,1,36190443,train |
| GSE215361,Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium],8,Mus musculus,Visium,Visium,lung,cancer,disease,8,37127830,train |
| GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],34,Homo sapiens,Visium,Visium,lung,,normal,34,36646791,train |
| GSE215994,Spatial transcriptomics on human dorsal root ganglion (DRG),2,Homo sapiens,Visium,Visium,peripheral nerve,,normal,2,37664243,train |
| GSE216189,Fragment-sequencing unveils local tissue microenvironments at single cell resolution,2,Mus musculus,Visium,Visium,liver,malignant colon neoplasm,disease,2,38012149,train |
| GSE216214,Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function,8,Mus musculus,Visium,Visium,other,,normal;perturbation,8,36417854,train |
| GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",4,Mus musculus,Visium,Visium,breast,,normal,4,39587369,train |
| GSE216992,Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.,4,Homo sapiens,Visium,Visium,blood vessel,,disease;normal,4,38718134,val |
| GSE217058,Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics,8,Mus musculus,Visium,Visium,brain,,normal;perturbation,8,37143153,train |
| GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,18,Homo sapiens,Visium,Visium,uterus,,normal;disease;not stated,18,35533147;37004130;39439565;39687623;39762272;41218071,train |
| GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,4,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,4,37144485,test |
| GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],13,Mchenga conophoros,Visium,Visium,brain,,normal,13,37580322,val |
| GSE217664,Decoding Trp53 regulatory program in various tissues and organs,3,Mus musculus,BMK S1000,BMKMANU S1000/S3000,thymus,,perturbation;normal,0,40887856,train |
| GSE217828,YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal,2,Mus musculus,Visium,Visium,heart,,perturbation,2,38510108,train |
| GSE217843,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer - Spatial transcriptomics of mouse PDAC samples,2,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,2,37914939,train |
| GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,13,Homo sapiens,Other,not named in GEO,pancreas,pancreatic ductal adenocarcinoma,disease,0,37914939,train |
| GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,2,Mus musculus,Visium,Visium,bone,tibia fracture;neurofibromatosis type 1,disease,2,38990653,train |
| GSE218539,Spatial Transcriptomics in the Human Left Atrial Appendage and Pulmonary Vein Sleeve,12,Homo sapiens,Visium,Visium,blood vessel;heart,,normal,12,41314481,train |
| GSE218761,Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction,3,Mus musculus,Visium,Visium,heart,heart failure,normal;disease,3,39673349,test |
| GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,8,Homo sapiens,Visium,Visium,breast,breast cancer;triple-negative breast carcinoma,disease,8,,train |
| GSE218970,A Spatial Transcriptome for Germinating Barley Grain,24,Hordeum vulgare,Visium,Visium,plant,,normal,24,37351575,train |
| GSE219120,Spatiotemporal multi-omics decoding of the developing human spinal cord I,24,Homo sapiens,Visium,Visium,spinal cord,,normal,24,37095395,train |
| GSE220218,Insulin-like growth factor I reduces coronary atherosclerosis in pigs with familial hypercholesterolemia,4,Sus scrofa,Visium,Visium,blood vessel,coronary atherosclerosis;familial hypercholesterolemia,disease,4,36602878,train |
| GSE220572,Reconstruction of 3-dimensional tissue organization at the single-cell resolution [ST],2,Homo sapiens,Visium,Visium,skin,,normal,2,36711844;38915088,train |
| GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,39002542,train |
| GSE220817,neuroendocrine control of planarian regeneration (Spatial transcriptome),1,Schmidtea mediterranea,Visium,Visium,other,,perturbation,0,,train |
| GSE220978,Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC,4,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,4,38229179,train |
| GSE221106,Spatial analysis of microglial and vascular responses following recurrent intranasal Group A Streptococcus infections,8,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,infectious disease,perturbation;disease,0,,val |
| GSE221359,In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases [Visium],8,Mus musculus,Visium,Visium,liver,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,8,37863068,train |
| GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,14,Mus musculus,Visium,Visium,bone;brain,,normal,14,36720873,train |
| GSE222322,Spatial transcriptomics on human lumbar spinal cord,20,Homo sapiens,Visium,Visium,spinal cord,,not stated;normal,20,36731429,val |
| GSE222383,Developmental Deficits of MGE-derived Interneurons in the Cntnap2 Knockout Mouse Model of Autism Spectrum Disorder,1,Mus musculus,Stereo-seq,Stereo-seq,brain,autism,disease,0,36819097,train |
| GSE222410,Spatial transcriptomics reveals unique gene expression changes in different brain regions after sleep deprivation,16,Mus musculus,Visium,Visium,brain,,perturbation;normal,16,37925446,train |
| GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,3,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease,3,36819717,train |
| GSE223020,Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics,15,Homo sapiens,ST (legacy),ST (legacy),brain,,normal,0,37751695,train |
| GSE223066,Mapping the spatial transcriptomic signature of the hippocampus during memory consolidation,8,Mus musculus,Visium,Visium,brain,,normal,8,37773230,train |
| GSE223501,Non-small Cell Lung Cancer Brain Metastasis Atlas [slide-seq],12,Homo sapiens,Slide-seq,Slide-seq,brain;lung,non-small cell lung carcinoma,disease,0,40016452,train |
| GSE223559,Multimodal decoding of human liver regeneration [st_human],8,Homo sapiens,Visium,Visium,liver,,disease;normal,8,38693268,train |
| GSE223560,Multimodal decoding of human liver regeneration [st_mouse],11,Mus musculus,Visium,Visium,liver,liver disorder,normal;disease,11,38693268,test |
| GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,7,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,perturbation;disease,7,39190487,train |
| GSE224210,Single cell and spatial transcriptomic profile of whole CLAD and donor control lung tissue,4,Homo sapiens,Visium,Visium,lung,,disease;normal,4,36946463,train |
| GSE224336,Targeting PDGF signaling of cancer-associated fibroblasts blocks feedback activation of HIF-1α and overcomes chemoresistance in ovarian clear cell carcinoma,2,Homo sapiens,Visium,Visium,ovary,carcinoma,disease,2,38670097,train |
| GSE224360,PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS,4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,37995223,train |
| GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,3,Homo sapiens,Visium,Visium,liver;pancreas;lymph node,hepatocellular carcinoma;neoplasm;pancreatic ductal adenocarcinoma,disease,3,37080163;37591207,test |
| GSE224477,ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset),3,Homo sapiens,Visium,Visium,brain,brain neoplasm,disease,3,40562749,test |
| GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,6,Homo sapiens,Visium,Visium,skin,psoriasis,normal;disease,6,37308489,val |
| GSE225690,Netrin-1 blockade induces tumor growth inhibition and EMT reversion in endometrial cancer [visium data],4,Homo sapiens,Visium,Visium,unknown,endometrial cancer,disease,4,37532934,train |
| GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,11,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,normal;disease;perturbation,10,37410813,test |
| GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,6,Homo sapiens,Visium,Visium,colon;liver,colorectal cancer;metastatic neoplasm,disease,6,37327339,train |
| GSE226097,A Single-Nucleus Atlas of Seed-to-Seed Development in Arabidopsis,1,Arabidopsis thaliana,Slide-seq,Slide-seq,plant,,normal,0,40830271,test |
| GSE226208,"Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]",2,Mus musculus,Visium,Visium,brain,nervous system injury,normal;disease,2,38570482;39179527,train |
| GSE226430,Spatiotemporal understanding of healthy and disordered early pregnancy governed by immune-featured stromal cells,3,Mus musculus,Stereo-seq,Stereo-seq,uterus,,normal,0,37699390,train |
| GSE226533,Human and Murine Kidneys Contain Transcriptionally and Spatially Orthologous Resident Macrophage Subpopulations in Acute Kidney Injury,2,Homo sapiens,Visium,Visium,kidney,acute kidney injury,disease,2,,train |
| GSE226663,"Common Mitochondrial Deletions in RNA-Seq: Evaluation of Bulk, Single-Cell and Spatial Transcriptomic Datasets",8,Homo sapiens,Visium,Visium,brain,Alzheimer disease;Parkinson disease,normal;disease,8,38368460,train |
| GSE226760,The Triptryium wilfordii derivative celastrol has anti-fibrotic effects in systemic sclerosis [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,skin,systemic sclerosis;skin disorder;scleroderma,normal;disease,8,37328193,train |
| GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,4,Homo sapiens,Visium,Visium,colon,colorectal cancer,disease,4,38446659,train |
| GSE227019,Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics,3,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,3,36882687,test |
| GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,7,Mus musculus,Other;Visium,ISS (Cartana);Visium,kidney,,normal;perturbation,1,38360882,train |
| GSE227332,The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium],6,Mus musculus,Visium,Visium,thymus,,normal;perturbation,6,37948511,test |
| GSE227598,Time-series spatial transcriptomic analysis of murine colon undergoing AOM-DSS tumorigenesis with and without LXR activation,5,Mus musculus,Visium,Visium,colon,,normal;disease,5,39567700,train |
| GSE227742,Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation,4,Mus musculus,Visium,Visium,small intestine,,normal;perturbation,4,39567700,train |
| GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,4,Homo sapiens,Visium,Visium,spleen,splenic marginal zone lymphoma,disease;normal,4,38828498;40374674,train |
| GSE228169,Human Cortical Kidney Sections,2,Homo sapiens,Visium,Visium,kidney,acute kidney injury,disease,2,,train |
| GSE228195,Hepatocyte-macrophage crosstalk via the PGRN-EGFR axis modulates ADAR1-mediated immunity in the liver -Spatial Transcriptomics,9,Mus musculus,Visium,Visium,liver,,perturbation,9,38935501,val |
| GSE228360,Spatial and single cell transcriptomics reveals cellular crosstalk changes in ileal Crohn’s disease during inflammation,12,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,12,40059828,val |
| GSE228394,Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics,3,Mus musculus,Visium,Visium,brain,,normal,3,38264685,train |
| GSE228516,Aristolochic Acid Nephropathy 2 week time point of CD45+ cells,1,Mus musculus,Visium,Visium,kidney,Balkan nephropathy;chronic kidney disease,disease,1,,train |
| GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,4,Mus musculus,Visium,Visium,bone,,normal,4,37926705,test |
| GSE228685,Spatial transcriptomics of adenoid cystic carcinoma of the lacrimal gland,1,Homo sapiens,Visium,Visium,eye,lacrimal gland carcinoma;adenoid cystic carcinoma,disease,1,37370820,train |
| GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,4,Homo sapiens,Visium,Visium,other,psoriatic arthritis,disease;normal,4,38396288,train |
| GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,4,Ciona intestinalis,Visium,Visium,brain,,normal,4,40970208,train |
| GSE229508,Spatial transcriptome of developmental mouse brain reveals temporal dynamics of gene expressions and heterogeneity of the claustrum,2,Mus musculus,Visium,Visium,brain,,normal,2,40210990,train |
| GSE229635,Spatial transcriptome of muscle sample from the main electric organ of electric eel,3,Electrophorus voltai,Visium,Visium,skeletal muscle,,normal,3,,train |
| GSE229699,"Bacterial TLR2/6 Ligands Block Ciliogenesis, Derepress Hedgehog Signaling, and Expand the Neocortex",5,Mus musculus,Visium,Visium,brain,pneumonia,normal;disease,5,37052506,train |
| GSE229823,Single-cell Multi-omics Analysis of Human Testicular Germ Cell Tumor Reveals its Molecular Features and Microenvironment II,3,Homo sapiens,Visium,Visium,testis,testicular germ cell tumor,disease,3,,train |
| GSE229877,Identification of spatially-resolved markers of malignant transformation in Intraductal Papillary Mucinous Neoplasms. [Visium],4,Homo sapiens,Visium,Visium,pancreas,mucinous neoplasm,disease,0,38553466,train |
| GSE230098,Orthotopic 4T1 tumors spatial transcriptomics,4,Mus musculus,Visium,Visium,other,neoplasm,disease,4,40670787,train |
| GSE230207,Spatial single cell analysis of tumor microenvironment remodeling pattern in primary central nervous system lymphoma,4,Homo sapiens,Visium,Visium,brain,primary central nervous system lymphoma,disease,4,37120690,train |
| GSE230282,Spatial transcriptomics of de novo NEPC and ARPC,1,Homo sapiens,Visium,Visium CytAssist,prostate,cancer,disease,1,37240308,train |
| GSE230424,Spatial transcriptome gene expression profile in 2 patients with Hashimoto's thyroiditis and 2 patients with papillary thyroid cancer combined with Hashimoto's thyroiditis.,4,Homo sapiens,Visium,Visium,thyroid,thyroid gland papillary carcinoma;Hashimoto thyroiditis,disease,4,39178310,train |
| GSE230776,Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Slide-seq],1,Gallus gallus,Slide-seq,Slide-seq,other,,normal,0,36840366,train |
| GSE230778,Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Spatial Transcriptomics],4,Gallus gallus,Visium,Visium,other,,normal,0,36840366,train |
| GSE231385,SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data,1,Homo sapiens,Visium,Visium,lung,,disease,1,39402626,train |
| GSE231496,A masked generative graph representation learning framework empowering precise spatial domain identification,1,Homo sapiens,Visium,Visium,heart,,normal,1,42178226,train |
| GSE231998,The use of ectopic volar fibroblasts to modify skin identity,1,Homo sapiens,Xenium,Xenium,skin,,perturbation,0,39236183,train |
| GSE232477,HIV-1 activates oxidative phosphorylation in infected CD4 T cells in a human tonsil explant model,1,Homo sapiens,Visium,Visium,tonsil,,normal,0,37325659,train |
| GSE232734,Synovial Th17 transdifferentiation into exTh17 sustains chronic IL-17-independent inflammatory arthritis [Visium],2,Homo sapiens,Visium,Visium,other,rheumatoid arthritis,disease,2,41202149,train |
| GSE232766,Integration of single-nuclei RNA-sequencing and spatial transcriptomics defines the complex microenvironment of NF1-associated plexiform neurofibromas,4,Homo sapiens,Visium,Visium,other,plexiform neurofibroma;neurofibromatosis type 1,disease,4,37770931,train |
| GSE232910,Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section,19,Mus musculus;Homo sapiens,Visium,Visium,brain,Parkinson disease,disease,19,37667091,train |
| GSE233208,Single-nucleus RNA-Seq and spatial transcriptomics characterization of Alzheimer’s Disease and Down Syndrome,119,Mus musculus;Homo sapiens,Visium,Visium,brain,Alzheimer disease;Down syndrome;syndromic disease,disease;normal,0,39578645,train |
| GSE233223,spatial RNA-seq of SCG,1,Mus musculus,MERFISH/MERSCOPE,MERFISH,other,,normal,0,37471539,train |
| GSE233254,Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential,2,Mus musculus,Visium,Visium,pancreas,mucinous neoplasm,disease,2,37285225,test |
| GSE233293,Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas,13,Homo sapiens,Visium,Visium,pancreas,pancreatic intraductal papillary-mucinous neoplasm;pancreatic ductal adenocarcinoma,disease,13,37285225,train |
| GSE233513,Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys,4,Mus musculus,Visium,Visium,kidney,,normal;perturbation;disease,4,38017015,val |
| GSE233571,Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain,12,Rattus norvegicus,Visium,Visium,brain,,perturbation;normal,0,,train |
| GSE234035,Single cell analyses reveal the transient emergence of retinal progenitor cells in the ciliary margin zone during human retinal development [Spatial],16,Homo sapiens,Visium,Visium,eye,,normal,16,38670973,test |
| GSE234157,Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade,1,Mus musculus,Visium,Visium,unknown,neoplasm,disease,1,39292804,train |
| GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,8,Mus musculus,Visium,Visium,lung,,disease,8,40769983,val |
| GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,4,Mus musculus,Slide-seq,Slide-seqV2,spleen,malaria,disease,0,38944658,train |
| GSE234266,Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium],2,Mus musculus,Visium,Visium,skin,cancer,disease,2,37532929,train |
| GSE234271,Novel integrated multiomics analysis reveals Itgbl1-mediated regulation of fibrogenesis through antagonism of Tgfβ1 and IL1β signaling. (Spatial Gene Expression),3,Mus musculus,Visium,Visium,skin,,disease,3,39558136,train |
| GSE234713,IBD CosMx NanoString data from colonic mucosa,9,Homo sapiens,CosMx,CosMx,colon,ulcerative colitis;Crohn disease,normal;disease,0,37495570,train |
| GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,24,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,24,38898272;38907165,train |
| GSE234885,Sorafenib inhibits invasion of multicellular organoids that mimic Lymphangioleiomyomatosis nodules.,2,Homo sapiens,Visium,Visium,lung,lymphangioleiomyomatosis,disease,2,40776927,train |
| GSE235247,Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis,4,Mus musculus,Visium,Visium,pancreas,acute pancreatitis,disease,4,38940937,test |
| GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],7,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,7,38297291,train |
| GSE235583,Deciphering the spatio-temporal transcriptional and chromatin accessibility of human retinal organoid development at the single cell level [Spatial Transcriptomics],24,Homo sapiens,Visium,Visium,eye;other,,normal,24,,train |
| GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",20,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,20,37460871,train |
| GSE235743,Genetic vulnerability to healing reveals a spatially resolved epithelial restitution program,3,Mus musculus,Visium,Visium,colon,,normal;perturbation,3,37878672,train |
| GSE235896,Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,22,Homo sapiens;Mus musculus,Other;Visium,Decoder-seq;Visium,kidney;brain,,disease;normal,17,,train |
| GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,4,Mus musculus,Visium;ST (legacy),Visium;ST (legacy),brain,traumatic brain injury,normal;disease,4,38007580,val |
| GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],23,Mus musculus,Visium,Visium,liver,,perturbation;normal,23,,train |
| GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,8,Homo sapiens,Visium,Visium,uterus,,normal,8,38296945,train |
| GSE236681,Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy,4,Homo sapiens,Visium,Visium,liver,metastatic neoplasm;breast cancer,disease,4,35259269,train |
| GSE236698,Mucinous colorectal adenocarcinoma,2,Homo sapiens,Visium,Visium,colon,colorectal adenocarcinoma,disease;normal,2,38778448,test |
| GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,4,Mus musculus,Visium,Visium,colon,colitis,disease,4,42097141,train |
| GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,11,Mus musculus,Visium,Visium,brain,,normal;disease,11,39475792,train |
| GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,perturbation;normal,0,,train |
| GSE237119,Red blood cells-heme-exposure and tumor-associated macrophage identity,2,Mus musculus,Visium,Visium,unknown,neoplasm,disease,2,38060331,train |
| GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,19,Homo sapiens,Visium,Visium,brain,glioblastoma;oligodendroglioma;astrocytoma (excluding glioblastoma);high grade astrocytic tumor,disease,19,38653236,test |
| GSE237308,Three-dimensional molecular architecture of mouse organogenesis,4,Mus musculus,Visium,Visium,embryo (whole),,normal,0,37524711,train |
| GSE237771,Epithelial-Immune Metabolic Codependency Fuels Inflammatory Disease [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,skin,inflammatory disease,disease,2,38772365,train |
| GSE238004,Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples,4,Mus musculus,Visium,Visium,other,melanoma,disease,4,38626768,train |
| GSE238145,Batf3-dendritic cells and 4-1BB/4-1BB ligand axis are required at the effector phase within the tumor microenvironment for PD-1/PD-L1 blockade efficacy,10,Homo sapiens,Visium,Visium,bladder,urinary bladder carcinoma,disease,0,38656869,train |
| GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,6,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,6,37723590,test |
| GSE240015,Age-related epithelial defects limit thymic function and regeneration [visium],2,Mus musculus,Visium,Visium,thymus,,normal,2,39112630,train |
| GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,20,Medicago truncatula,Visium,Visium,plant,,perturbation;normal,18,,train;test |
| GSE240271,High-resolution spatial transcriptomics of hormone-induced ovulation in mice,8,Mus musculus,Slide-seq,Slide-seq,ovary,,normal;perturbation,0,37662215;40060619;41888598,train |
| GSE240715,Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis,4,Mus musculus,Visium,Visium,brain,,normal,0,37855382,train |
| GSE240843,Spatial transcriptomic data of a lymph node from an individual with Multicentric Castleman Disease,1,Homo sapiens,Stereo-seq,Stereo-seq,lymph node,idiopathic multicentric Castleman disease;multicentric Castleman disease,disease,0,38170173,train |
| GSE241124,Spatiotemporal Single-Cell Roadmap of Human Skin Wound Healing (Spatial),16,Homo sapiens,Visium,Visium,skin,,normal;disease,16,39366968;39468077;39729995,train |
| GSE241346,"A Proteomic Atlas of Atherosclerosis: The Contribution of Proteoglycans to Sex Differences, Plaque Phenotypes and Outcomes",1,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,1,37646165,train |
| GSE242058,Spatial Transcriptomics Reveal Basal Sex Differences in Supraoptic Nucleus Gene Expression of Adult Rats Related to Cell Signaling and Ribosomal Pathways,8,Rattus norvegicus,Visium,Visium,brain,,normal,8,37858270,train |
| GSE242214,A molecular atlas of brain neurovascular interactions reveals a spatiotemporal requirement of TGFβ signaling in brain angiogenesis [Visium],6,Mus musculus,Visium,Visium,brain,,normal,6,42173924,val |
| GSE242249,Spatial transcriptomic profiles of prostate tissue obtained from a patient diagnosed with benign prostatic hyperplasia (BPH).,1,Homo sapiens,Visium,Visium,prostate,benign prostatic hyperplasia,disease,0,38654277,val |
| GSE242270,Spatiotemporal immune atlas of a clinical-grade gene-edited pig-to-human kidney xenotransplant,1,Sus scrofa,Visium,Visium,kidney,,normal,1,38605083,train |
| GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,16,Homo sapiens,Visium,Visium,breast,breast cancer,disease,16,39456890;42539924,train |
| GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,17,Homo sapiens,Visium,Visium,brain,glioblastoma;oligodendroglioma;astrocytoma (excluding glioblastoma);glioma,disease,17,40514380,train |
| GSE242471,Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.,4,Mus musculus,Visium,Visium,lung,infectious disease,disease;normal,4,39384974,train |
| GSE243022,Cancer-associated Fibroblast Spatial Heterogeneity and EMILIN1 Expression in Cancer Stroma Modulate TGF-b Activity and CD8+ T-Cell Infiltration in Breast Cancer,4,Homo sapiens,Visium,Visium,breast,breast cancer,disease,4,38505604,train |
| GSE243120,T cell mediated microglia activation triggers myelin pathology in a model of amyloidosis [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,amyloidosis;Alzheimer disease,disease,0,38937583,train |
| GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,16,Mus musculus,Visium,Visium,brain,,perturbation;normal,16,,train |
| GSE243168,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",1,Homo sapiens,Xenium,Xenium,breast,breast cancer,disease,1,38114474,test |
| GSE243179,Clonal proliferation of smooth muscle cell in human atherosclerosis,2,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,2,37881937,train |
| GSE243225,Multi-species atlas resolves an axolotl limb development and regeneration paradox,1,Ambystoma mexicanum,Visium,Visium,other,,perturbation,1,37816738,train |
| GSE243275,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [scRNA-seq and Visium]",1,Homo sapiens,Visium,Visium CytAssist,breast,breast cancer,disease,1,38114474,train |
| GSE243280,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis",2,Homo sapiens,Xenium,Xenium,breast,breast cancer,disease,2,38114474,train |
| GSE243291,Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis,2,Homo sapiens,Visium,Visium,skeletal muscle,sarcoidosis,disease,2,38067175,train |
| GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,9,Homo sapiens,Visium,Visium,liver,hepatitis B virus infection,disease,9,37968095,train |
| GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,3,Homo sapiens,Visium,Visium,liver,,normal,3,38199298,train |
| GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,8,Mus musculus,Visium,Visium,skeletal muscle,,normal;perturbation,8,38883818,val |
| GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,4,Homo sapiens,Visium,Visium,adrenal gland,,normal,4,37953901,train |
| GSE244536,Deterministic reprogramming of neutrophils in tumors,4,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,3,38207030,test |
| GSE244641,Recirculating regulatory T cells mediate thymic regeneration [visium],6,Mus musculus,Visium,Visium,thymus,,normal,6,39892391,train |
| GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,13,Mus musculus,Visium,Visium,heart,,perturbation;normal,13,40967223,train |
| GSE244659,A diverse network of pericoerulear neurons control arousal states,2,Mus musculus,Other,Pixel-seq,brain,,normal,0,40335695,train |
| GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,4,Homo sapiens,ST (legacy),ST (legacy),heart,,normal,4,38011284,train |
| GSE244803,Spatial transcriptomics of mouse spleens during steady state and malaria infection. [d0_d7_slideseqV2],8,Mus musculus,Slide-seq,Slide-seqV2,spleen,malaria,normal;disease,0,38848213,train |
| GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,4,Mus musculus,Visium,Visium,other,,perturbation;disease,4,38117901,train |
| GSE245111,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Curio],4,Mus musculus,Slide-seq,Slide-seq,lymph node,,perturbation;disease,0,38374265,train |
| GSE245112,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen,4,Mus musculus,Visium,Visium,lymph node,,perturbation,4,38374265,train |
| GSE245263,Spatial transcriptomics of brains from tumor-bearing C57BL/6 mice,1,Mus musculus,Visium,Visium,brain,neoplasm,disease,1,,train |
| GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],46,Mus musculus,Visium,Visium,small intestine;colon,,normal;perturbation;disease,46,39567686,val |
| GSE245313,Characterization of regeneration initiating cells during Xenopus laevis tail regeneration [spatial transcriptomics],3,Xenopus laevis,Visium,Visium,other,,perturbation,3,39350302,train |
| GSE245388,Spatial transcriptomics reveals unexpected histological heterogeneity in primary prostate,8,Homo sapiens,Visium,Visium,prostate,prostate cancer,disease,8,38569039,train |
| GSE245469,Multimodal spatiotemporal transcriptomic resolution of embryonic palate osteogenesis [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,head and neck,,normal,4,37709732,train |
| GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,24,Mus musculus,Visium,Visium,other,melanoma,disease,24,39700408,test |
| GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,4,Homo sapiens,Visium,Visium,liver,primary sclerosing cholangitis;liver disorder,disease,4,38199298,train |
| GSE245704,Spatial transcriptomic analysis of Gastric adenocarcinoma,1,Homo sapiens,Visium,Visium,stomach,gastric adenocarcinoma,disease,1,39021298,train |
| GSE245908,Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,2,38350444;41270217,train |
| GSE246495,Spatial transcriptomics in human mid luteal endometrial biopsies,8,Homo sapiens,Visium,Visium,uterus,,normal;not stated,8,40561039,train |
| GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,11,Homo sapiens,Visium,Visium,breast,,disease;normal,4,38216737,train |
| GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,4,Mus musculus,Xenium,Xenium,brain,"glioma;nervous system disorder, non-human animal",disease,4,37904990,train |
| GSE246770,Profiling of murine tumors initiated by transplantation of engineered prostate organoids,8,Mus musculus,Visium,Visium,prostate;lymph node,neoplasm,disease,0,39394434,train |
| GSE247450,MERFISH reveals embryonic endothelial heterogeneity,3,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,embryo (whole),,normal,0,38348657,train |
| GSE247834,Well-ST-seq: cost-effective and cellular level spatial transcriptomics with high RNA capture efficiency,10,Mus musculus,Other,Well-ST-seq,embryo (whole);spleen,,normal,0,,train |
| GSE248077,Perturbed liver gene zonation in a mouse model of non-alcoholic steatohepatitis,13,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,normal;disease,13,,train |
| GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,13,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis;pulmonary fibrosis;interstitial lung disease 2,disease;normal,13,39978854,train |
| GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,8,Homo sapiens,Visium,Visium,thyroid,Hashimoto thyroiditis;Graves disease,normal;disease,8,39003267,test |
| GSE248230,Generation of human neuromusculoskeletal tri-tissue organoids [Spatial Transcriptomics],1,Homo sapiens,Visium,Visium,other,,normal,1,,train |
| GSE248347,Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis,2,Mus musculus,Visium,Visium,heart,autoimmune myocarditis,normal;disease,2,41341993,train |
| GSE248356,Spatial transcriptomics reveals the pharmacological effects on tumors and TME structural heterogeneity under MASK vaccine treatment,3,Mus musculus,Visium,Visium,other,melanoma,disease,3,40303352,train |
| GSE248517,Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes,8,Mus musculus,Visium,Visium,eye,,normal;perturbation,8,40251274,train |
| GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,4,Homo sapiens,Visium,Visium,brain,,normal,4,39414359,test |
| GSE248608,Spatial Multiomics Reveals Metabolic Reprogramming and Calcification Characteristics of Diabetic Macroangiopathy [Spatial Transcriptomics],6,Homo sapiens,Visium,Visium,blood vessel,diabetes mellitus;calcinosis,disease,6,39395983,train |
| GSE248646,Spatial Gene Expression in the Adult Rat Patellar Tendon,2,Rattus norvegicus,Visium,Visium,other,,normal,2,,train |
| GSE248953,Cellular Heterogeneity of Pluripotent Stem Cell Derived Cardiomyocyte Grafts is Mechanistically Linked to Treatable Arrhythmias,2,Homo sapiens,Visium,Visium,heart,cardiac rhythm disease;heart disorder,disease,2,,train |
| GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],20,Mus musculus,Visium,Visium,pancreas,,perturbation;normal,20,40156071,train |
| GSE249279,Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis,4,Homo sapiens,Visium,Visium,skin,systemic sclerosis,disease,4,38172207;40164604;42124727,train |
| GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],20,Mus musculus,Visium,Visium,brain,,normal;perturbation,20,42675226,val |
| GSE249729,Spatial transcriptomics data of HS lesional skin and healthy skin,3,Homo sapiens,Visium,Visium,skin,,disease;normal,3,38113104,train |
| GSE249803,Spatial transcriptomics reveals spatial remodling of hepatic lobule during liver regeneration,4,Mus musculus,Visium,Visium,liver,,normal;perturbation,4,41033443,train |
| GSE249965,Spatial transcriptomics of primary human hepatoblastomas,3,Homo sapiens,Visium,Visium,liver,hepatoblastoma,disease;normal,3,39567523,train |
| GSE250138,Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis,23,Homo sapiens,Visium,Visium,kidney,glomerulonephritis,disease;normal,23,39300109;40393992,train |
| GSE250163,Role of copper in progression of clear cell renal cell carcinoma [Spatial transcriptomics],5,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,5,39476412,test |
| GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],45,Homo sapiens,Xenium,Xenium,lung,pulmonary fibrosis;idiopathic pulmonary fibrosis;sarcoidosis;interstitial lung disease,normal;disease,25,38168317;39901013;41390915,train |
| GSE250398,Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs,8,Mus musculus,Visium,Visium,lung,,disease;normal,8,40108456,train |
| GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,16,Homo sapiens,Visium,Visium,thyroid,thyroid gland papillary carcinoma;thyroid gland undifferentiated (anaplastic) carcinoma,normal;disease,16,,train |
| GSE250636,Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.,9,Homo sapiens,Visium,Visium,spinal cord;bone;meninges;colon;other,neoplastic meningitis;melanoma,disease,9,38866016;39005315;39636739,train |
| GSE251693,Double-negative B cells and DNASE1L3 colocalise with microbiota in gut-associated lymphoid tissue,2,Homo sapiens,Visium,Visium,colon,,normal,2,38744839,train |
| GSE251926,Open-ST: High-resolution spatial transcriptomics in 3D,19,Homo sapiens,Other,Open-ST,lymph node,head and neck squamous cell carcinoma,disease,0,38917789,train |
| GSE251938,Single-cell and In Situ Spatial Transcriptomics of Marjolin ulcers,1,Homo sapiens,Xenium,Xenium,skin,ulcer disease;burn,disease,1,39128494,train |
| GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),10,Homo sapiens,Visium,Visium,stomach;unknown,gastric cancer,disease,10,39580151,train |
| GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,23,Homo sapiens,Molecular Cartography,Molecular Cartography,brain,medulloblastoma,disease,0,40335697,val |
| GSE252108,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses [I],2,Homo sapiens,Visium,Visium,adrenal gland,adrenal cortex carcinoma,disease,0,,train |
| GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,5,Homo sapiens,Visium,Visium,adrenal gland,adrenal cortex carcinoma,disease;normal,5,,train |
| GSE252176,Multi-Omics molecular subtyping based on commensal microbiome predicts molecular characteristics and therapeutic response in Triple-Negative Breast Cancer [Spatial Transcriptome seq],4,Homo sapiens,Visium,Visium,breast,triple-negative breast carcinoma,disease,4,38730464,val |
| GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,16,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,16,38947514;40867324,test |
| GSE253199,Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis [Spatial Transcriptomics],12,Homo sapiens,Visium,Visium,adipose tissue,osteoarthritis,disease,12,39919907,train |
| GSE253378,A spatial transcriptomics based Label-free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis,5,Mus musculus;Homo sapiens,Visium,Visium,lung,,normal;disease,5,,train |
| GSE253428,Spatial transcriptomic sequencing of day 7 tumors in G422TN-GBM model,1,Mus musculus,Visium,Visium,brain,glioblastoma,disease,1,42474078,train |
| GSE253439,Nanostring CosMx 980-plex RNA profiling of human kidney biopsy and nephrectomy,4,Homo sapiens,CosMx,CosMx,kidney,minimal change disease;IgA glomerulonephritis;pyelonephritis,disease,0,40399382,train |
| GSE253474,In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection,116,Homo sapiens,CosMx,CosMx,lung,COVID-19,disease,0,38377798,train |
| GSE253520,Mouse uterine gene expressions during peri-implantation period,3,Mus musculus,Visium,Visium,uterus,,normal,3,39377223;41803091,train |
| GSE253585,Deconvolution of regulatory T cell heterogeneity identifies cycling precursors as conductors of immune escape during breast carcinoma progression [Visium],20,Rattus norvegicus,Visium,Visium,breast,breast carcinoma;cancer;epithelial neoplasm;breast cancer,normal;disease,20,41997138,test |
| GSE253710,Respiratory infection with influenza A virus delays remyelination and alters oligodendrocyte metabolism.,12,Mus musculus,Visium,Visium,brain,infectious disease;disease of primarily extrinsic mechanism;influenza,normal;disease,12,39104416,train |
| GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,adrenal gland,,normal,4,,train |
| GSE253852,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover,2,Mus musculus,Visium HD,Visium HD,adrenal gland,,normal,2,,train |
| GSE253951,Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain [Mouse Xenium],2,Mus musculus,Xenium,Xenium,spinal cord,,normal,2,39453813,train |
| GSE254056,Injury-Induced CLU-Positive Cardiomyocytes Drive Metabolic Reprogramming of Macrophage Function in Heart Regeneration [stero-seq],2,Mus musculus,Stereo-seq,Stereo-seq,heart,,perturbation,0,41205597,val |
| GSE254087,Postnatal Subventricular Zone Injury Predicts Motor Impairment in Preterm Infants Following Intestinal Disease,2,Mus musculus,Xenium,Xenium,brain,intestinal disorder;peritonitis,normal;disease,2,,train |
| GSE254164,Dynamic fibroblast-immune interactions shape recovery after brain injury,4,Mus musculus,Visium,Visium,brain,brain injury,disease,4,40903576,train |
| GSE254364,High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics,2,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver,disease,2,36652202,test |
| GSE254652,Comparing 10x Visium spatial transcriptomic technologies,23,Mus musculus,Visium,Visium,spleen,malaria,disease,23,40156041;41278534,train |
| GSE254829,PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration,13,Homo sapiens,Visium,Visium,pancreas,pancreas disorder;intraepithelial neoplasia,disease,13,40569674,train |
| GSE254861,Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer,2,Mus musculus,Visium,Visium,other,neoplasm,disease,2,42313973,train |
| GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,4,Homo sapiens,Visium,Visium,bone marrow,acute myeloid leukemia,disease;normal,4,38582086,train |
| GSE255370,Characterization of cuprizone mouse model at single-cell and spatial transcriptomics level[Spatial Transcriptomics],28,Mus musculus,Visium,Visium,brain,,normal;disease,28,42626114,train |
| GSE255407,Single cell approaches define two mammalian oligodendrocyte precursor cell populations and their evolution over developmental time [Xenium In Situ Gene Expression],3,Mus musculus,Xenium,Xenium,brain,,normal,3,38579710,train |
| GSE255552,Spatial transcriptomic analysis of liver-innervating cholinergic neurons,2,Mus musculus,Visium,Visium,liver,,perturbation,2,39436946,train |
| GSE255892,Perinatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,brain injury,disease;normal,0,,train |
| GSE255942,The HIF-1α/PLOD2 axis integrates extracellular matrix organization and cell metabolism leading to aberrant musculoskeletal repair.,2,Mus musculus,Visium,Visium,skeletal muscle,burn,disease,2,38472175,train |
| GSE255953,Transcriptomic landscape of the anterior thalamic nuclei of the mouse [Xenium],7,Mus musculus,Xenium,Xenium,brain,,normal,0,38427564,train |
| GSE256234,Longitudinal spatial transcriptomics of murine IL10KO colitis,4,Mus musculus,Visium,Visium,colon,colitis;rectal prolapse,normal;disease,4,42097141,train |
| GSE256318,Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Nova-ST],7,Mus musculus,Other,Nova-ST,brain,,normal,0,39111312,test |
| GSE256319,Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Stereo-Seq],1,Mus musculus,Stereo-seq,Stereo-seq,brain,,normal,0,39111312,val |
| GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,16,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,normal;disease,16,39029468,train |
| GSE256505,Sex differences in Non-Alcoholic Steatohepatitis (NASH) in mice evoked by a fructose-palmitate-cholesterol (FPC)-enriched diet,2,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,disease,0,39911943,train |
| GSE258959,Spatiotemporal Landscape in Kidney of A Mouse Model of Hyperuricemia at Single-Cell Level [spatial transcriptomics data],4,Mus musculus,Visium,Visium,kidney,,disease;normal,4,39817712,train |
| GSE259363,Glycolysis in hepatic stellate cells coordinates fibrogenic extracellular vesicle release in a spatial manner to amplify liver fibrosis,4,Mus musculus,Visium,Visium,liver,,normal;disease,4,,train |
| GSE259405,"Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Spatial transcriptomics]",12,Mus musculus,Visium,Visium,brain,,normal;perturbation,12,39772671,train |
| GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,55,Homo sapiens,Xenium,Xenium,brain,supratentorial ependymoma;ependymoma,disease,55,41813893,val |
| GSE260779,Spatial transcriptomic sequencing of repaired lung transplanted with human P63+ progenitor [STOmics-seq],1,Homo sapiens,Stereo-seq,Stereo-seq,lung,,perturbation,0,39900892,test |
| GSE260801,Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics,10,Mus musculus,Slide-seq,Slide-seq,colon,colorectal cancer,disease;normal,0,40667258;41384492,test |
| GSE260847,Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics],8,Rattus norvegicus,Visium,Visium,brain,,normal,8,39171288,train |
| GSE260926,scMultiome-seq and single-cell spatial HD data for the developing human knee,1,Homo sapiens,Visium HD,Visium HD,bone,,normal,1,41520766,train |
| GSE260998,Germinal Center Dark Zone harbors ATR-dependent determinants of T-cell exclusion that are also identified in aggressive lymphoma – Visium_FFPE_Spatial_Trasciptomics_project,2,Mus musculus,Visium,Visium,lymph node,,perturbation,2,38562878;40674145,train |
| GSE261085,Spatial transcriptome sequencing of the human corpus cavernosum with normal erectile function,1,Homo sapiens,BMK S1000,BMKMANU S1000/S3000,other,,normal,0,39299236,train |
| GSE261487,Spatial transcriptome sequencing of the rat corpus cavernosum with normal erectile function,1,Rattus norvegicus,BMK S1000,BMKMANU S1000,other,,normal,1,39299236,train |
| GSE261545,Histopathological-based analysis of human kidney spatial transcriptomics data: toward precision pathology,1,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus,disease,1,39097165,train |
| GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,4,Mus musculus,Visium,Visium,kidney,chronic kidney disease,disease,4,40059824,train |
| GSE261890,Cancer cell self-built physical barriers promote acquired resistance to immunotherapy [spatial],2,Mus musculus,BMK S1000,BMKMANU S1000/S3000,lung,non-small cell lung carcinoma,disease,0,,train |
| GSE261958,Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics],22,Homo sapiens,Visium,Visium;Visium CytAssist,liver,hepatoblastoma,disease,22,39900120,train |
| GSE262082,Molecular lineage and spatial distribution of subplate neurons in the human fetal cerebral cortex.,1,Homo sapiens,Visium,Visium,brain,,normal,1,39495628,train |
| GSE262083,Young and Aged Striatal Astrocyte MERFISH Panel,2,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal,0,41006292,val |
| GSE262162,Treatment of cholangiocarcinoma using humanized monoclonal antibodies targeting Claudin-1 (CCA patient tissues),2,Homo sapiens,CosMx,CosMx,liver,cholangiocarcinoma,disease,2,42234772,test |
| GSE262245,NEST: Spatially-mapped cell-cell communication patterns using a deep learning-based attention mechanism,2,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,2,40481363,train |
| GSE262276,Spatial transcriptomics of intraductal carcinoma of the prostate (IDCP),1,Homo sapiens,Visium,Visium,prostate,prostate carcinoma;adenocarcinoma,disease,1,38732035,train |
| GSE262322,Deep learning of enhancer codes highlights similarities between mammalian and avian telencephalon cell types [stereoseq],1,Gallus gallus,Stereo-seq,Stereo-seq,brain,,normal,0,39946451,train |
| GSE262430,Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics,9,Rattus norvegicus,Visium,Visium,heart,myocardial infarction,disease,9,41285846,val |
| GSE262569,Smooth muscle-derived resident vascular adventitial progenitor cell contribution to cardiac fibrosis and inflammation is dependent on KLF4 [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,heart,,normal;perturbation,2,,train |
| GSE262998,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis,4,Homo sapiens,Visium,Visium,lung,pulmonary sarcoidosis,disease;normal,4,,train |
| GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],25,Homo sapiens,Visium,Visium,brain,Alzheimer disease;amyloidosis,disease;normal,25,40050704,train |
| GSE263079,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3],14,Homo sapiens,Visium,Visium,brain,Alzheimer disease;amyloidosis,disease,2,40050704,train |
| GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],4,Mus musculus,Visium,Visium,lung,sarcoidosis,normal;disease,4,,train |
| GSE263196,Spatial transcriptomic sequencing data of human small cell lung cancer,5,Homo sapiens,Visium,Visium,lung,small cell lung carcinoma,disease,5,,train |
| GSE263281,Spatial gene expression of canine veins during carotid-cartoid vein bypass implantation,8,Canis lupus familiaris,Visium,Visium,blood vessel,,normal;perturbation,8,38808504,train |
| GSE263333,"Spatial-Mux-seq: Multiplexed spatial mapping of chromatin features, transcriptome, and proteins at tissue scale",4,Mus musculus,Visium,Visium,embryo (whole);brain,,normal,0,39345645;39870864,train |
| GSE263450,Spatial transcriptomic mapping of the mouse brain in chronic stress,6,Mus musculus,Stereo-seq,Stereo-seq,brain,,perturbation;normal,0,40269152,test |
| GSE263498,Open-ST: High-resolution spatial transcriptomics in 3D [xenium],2,Homo sapiens,Xenium,Xenium,head and neck;lymph node,laryngeal squamous cell carcinoma;head and neck squamous cell carcinoma,disease,2,38917789,train |
| GSE263536,An Allele Agnostic Mutant KRAS Inhibitor Demonstrates Broad Spectrum Tumour Growth Inhibition in Pancreatic Ductal Adenocarcinoma,1,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,,train |
| GSE263591,Cardiac organoids for Hypertophic cardiomyopathy,1,Homo sapiens,CosMx,CosMx,heart,cardiomyopathy,disease,0,39594661,train |
| GSE263658,Spatial Transcriptomics in Bone Mechanomics: Exploring the Mechanoregulation of Fracture Healing in the Era of Spatial Omics.,2,Mus musculus,Visium,Visium,bone,,normal;perturbation,2,39742473,train |
| GSE263793,Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer's disease mouse model as revealed by spatial transcriptomics,7,Mus musculus,Stereo-seq |
| GSE263860,"Multi-omics sequencing reveals the signature of the genome, cell composition and transcriptome of nodal RDD [ST]",1,Homo sapiens,Visium,Visium,lymph node,,disease,1,,train |
| GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,8,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,8,39135097,val |
| GSE264107,A Single-Cell Woodchuck Liver Atlas Identifies Healthy and Disease-related Cellular Programs Conserved in Human [spatial transcriptomics],2,Marmota monax,Visium,Visium,liver,,normal,0,,train |
| GSE264233,Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing,3,Homo sapiens,Visium,Visium,lung,pulmonary fibrosis,disease,3,40719154,val |
| GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,14,Homo sapiens,Visium,Visium,pancreas,type 2 diabetes mellitus,disease;normal,14,40890166,train |
| GSE264334,Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium],1,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,disease,1,38898271,train |
| GSE264398,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium],2,Homo sapiens,Visium,Visium,lung,,normal,2,39003323,train |
| GSE264425,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Xenium],2,Homo sapiens,Xenium,Xenium,lung,,normal,2,39003323,train |
| GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],10,Homo sapiens,Visium,Visium,brain,,normal,10,,train |
| GSE265828,Unravelling the molecular activation of the reparative cardiac fibroblasts after myocardial infarction,4,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,4,41526391,val |
| GSE266007,WUSCHEL-dependent cis-regulation in maize inflorescence development at single-cell resolution,7,Zea mays,Visium,Visium,plant,,normal,7,41039501,train |
| GSE266136,10X Visium Spatial transcriptomics of murine small intestine 6 and 14 days post Heligmosomoides polygyrus infection with or without LXR agonist GW3965,4,Mus musculus,Visium,Visium,small intestine,infectious disease,disease,4,,val |
| GSE266147,Macrophage-mediated myelin recycling fuels brain cancer malignancy (VISIUM),13,Mus musculus,Visium,Visium,brain,brain cancer,disease,0,39137777,train |
| GSE266244,Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics,12,Mus musculus |
| GSE266518,Transcriptional and functional architecture of the whole neutrophil compartment I,4,Mus musculus,Visium,Visium,lung,influenza |
| GSE266585,Deconstruction of cellular dynamics after treatment of volumetric muscle loss injury with extracellular matrix,14,Canis lupus familiaris,Visium,Visium,skeletal muscle,,normal;perturbation,14,41022770,train |
| GSE266604,Spatial transcriptome analysis for placental tissue of preeclampsia,2,Homo sapiens,Visium,Visium,placenta,preeclampsia,normal;disease,2,41604492,train |
| GSE266680,Architecture of the neutrophil compartment in mice,1,Homo sapiens,Visium HD,Visium HD,lung,,not stated,1,41339555,train |
| GSE266688,Single cell approaches define forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (MERFISH),4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;disease,0,39823226,train |
| GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),19,Mus musculus,Xenium,Xenium,brain,,normal;disease;perturbation,19,39823226;40780964,train |
| GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,13,Mus musculus,Xenium,Xenium,brain,brain glioblastoma,disease,13,39255775,train |
| GSE267315,Spatial transcriptomic characteristics of the aging human ovary,4,Homo sapiens,Stereo-seq,scStereo-seq,ovary,,normal,0,41243550,train |
| GSE267401,Spatial transcriptomics of colorectal cancer tissues,4,Homo sapiens,Visium,Visium,colon |
| GSE267534,TLR4-dependent fibroblast-monocyte axis in tumor-draining lymph nodes contributes to metastasis in triple-negative breast cancer,3,Mus musculus,Visium,Visium,lymph node,triple-negative breast carcinoma,normal;disease,3,40957419,train |
| GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],6,Homo sapiens,Visium,Visium,unknown |
| GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,24,Mus musculus,Visium,Visium,lung,pulmonary fibrosis,normal;disease,24,38951642;41501078,train |
| GSE267960,Spatial transcriptome profile of EGFR-TKI resistant non-small cell lung cancer,2,Homo sapiens,Visium,Visium,lung,non-small cell lung carcinoma |
| GSE268014,Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma,28,Homo sapiens,Visium |
| GSE268015,Spatial transcriptome analysis of lung squamous cell carcinoma arising from interstitial pneumonia provides insights into tumor heterogeneity.,1,Homo sapiens,Visium,Visium,lung,squamous cell lung carcinoma |
| GSE268018,Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (Spatial Transcriptomics 2k),38,Mus musculus,ST (legacy),ST (legacy),liver,,disease;normal,0,39160174,train |
| GSE268049,The effect of exposure to neighborhood violence on GR signaling in lung tumors [Spatial Transcriptomics],15,Homo sapiens,Visium,Visium,lung,lung neoplasm,disease,15,38912926,train |
| GSE268068,Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM),4,Mus musculus,Visium,Visium,liver,,disease,4,39160174,train |
| GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,30,Homo sapiens |
| GSE268427,snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium],3,Homo sapiens,Visium,Visium,liver |
| GSE268492,Senescent-like microglia limit remyelination through the senescence associated secretory phenotype,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,spinal cord,,disease,0,40055369,train |
| GSE268523,Single-nucleus and spatial transcriptomics of human ovary: Molecular insights into signaling pathways underlying primary ovarian insufficiency in classic galactosemia [Spatial transcriptomics],6,Homo sapiens,Visium,Visium,ovary,classic galactosemia |
| GSE268577,Spatial transcriptomics of 3 H3.3K27M pDMG samples,3,Homo sapiens,Visium,Visium,brain,glioma,disease,3,39373720,train |
| GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,7,Mus musculus,Visium,Visium,spinal cord,spinal cord injury |
| GSE268847,Implant renal injury-responsive cells to supplement erythropoietin and protect kidney [Spatial Transcriptomics],2,Mus musculus |
| GSE269043,Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial),8,Mus musculus,Visium,Visium,lung,acute myeloid leukemia,normal;disease,8,,train |
| GSE269054,Spatially clustered type I interferon responses at injury borderzones,26,Mus musculus,Visium,Visium,heart,myocardial infarction,disease;perturbation,26,39198639,train |
| GSE269063,scRNA-Seq reveals anti-fibrotic mechanisms of TRPC6 inhibition [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,kidney,ureteral obstruction,disease,2,,train |
| GSE269283,Meningeal-derived retinoic acid regulates neurogenesis via suppression of Notch and Sox2 [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,40310723,train |
| GSE269332,Cell state dynamics during early stages of serous endometrial carcinoma,12,Mus musculus,Visium,Visium,uterus,endometrial carcinoma |
| GSE269354,Xenium In Situ Gene Expression of healthy and asthmatic lung endobronchial biopsies,2,Homo sapiens,Xenium,Xenium,airway,asthma,disease,0,40399607,train |
| GSE269377,Spatial characterization of the transcriptome of the adult healthy and mutant FUS mouse spinal cords [Spatial transcriptomics],4,Mus musculus,Visium,Visium,spinal cord,,normal,4,41430470,train |
| GSE269379,The CXCL16/CXCR6 axis is linked to immune effector cell-associated neurotoxicity in chimeric antigen receptor (CAR) T cell therapy,1,Homo sapiens,Visium HD,Visium HD,brain,toxic encephalopathy,disease,1,40588764,train |
| GSE269543,Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome],4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,,train |
| GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,4,Mus musculus,Visium,Visium,brain,glioma,normal;disease,4,,train |
| GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,oral cavity,,normal,4,39627243,train |
| GSE269617,The Maternal Gut-Immune Axis Programs the Neuroimmune Landscape of the Developing Brain,35,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;perturbation,0,,train |
| GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],5,Homo sapiens,Visium,Visium,lymph node |
| GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],12,Mus musculus,Xenium,Xenium,kidney,,perturbation |
| GSE269875,Spatial transcriptomics unveils novel potential disease mechanisms associated with the microenvironment in Multiple Myeloma,15,Mus musculus |
| GSE269906,Stereo-seq on human prefrontal cortex from six AD and six normal samples,12,Homo sapiens,Stereo-seq,Stereo-seq,brain,Alzheimer disease,disease;normal,0,39779708,train |
| GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,4,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease,4,39592224,train |
| GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],72,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,72,41593079,train |
| GSE271011,Polyamine Dysregulation Contributes to Muscle Fibers Vulnerability in ALS,7,Mus musculus,Visium,Visium,skeletal muscle,amyotrophic lateral sclerosis,normal;disease,7,39932195;42602328,train |
| GSE271077,Spatial mapping reveals erythroid niches in mice during development and stress,14,Mus musculus,Visium,Visium,liver |
| GSE271118,Single-cell transcriptomics revealed molecular vulnerability in a human midbrain-like organoid model of Parkinson's Disease [MERFISH],21,Homo sapiens,MERFISH/MERSCOPE,MERFISH,other;brain,Parkinson disease,normal;disease,0,,train |
| GSE271150,Spatial mapping reveals erythroid niches in human during development and stress,15,Homo sapiens,Visium,Visium,liver;bone marrow,myelodysplastic syndrome,normal;disease,15,42393220,train |
| GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,23,Homo sapiens,Visium,Visium,lung,lung disorder;COVID-19,disease;normal,23,,test |
| GSE271422,spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis,3,Homo sapiens,Visium,Visium,brain,melanoma,disease,3,39636739,train |
| GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,6,Mus musculus,Xenium,Xenium,liver;bone marrow;spleen,,normal;perturbation,6,42393220,train |
| GSE271725,A soil-grown wheat root atlas with validated cross-species cluster annotations allows to delineate conserved tissue specific marker genes [Spatial Transcriptomics],2,Triticum aestivum,Stereo-seq,Stereo-seq,plant,,normal,0,39893633,val |
| GSE271795,Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus,4,Mus musculus,Visium,Visium,esophagus,,normal,4,39164270,train |
| GSE271824,High resolution mapping of erythroid niches in human using subcellular spatial transcriptomics,3,Homo sapiens,Xenium,Xenium,liver;bone marrow,myelodysplastic syndrome,normal;disease,3,42393220,train |
| GSE271936,Immune and tumor cell landscape in pediatric high grade gliomas,3,Homo sapiens,Xenium,Xenium,brain,pediatric high-grade glioma;malignant glioma;ependymoma;childhood malignant neoplasm,disease,3,40315846,train |
| GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,brain,brain neoplasm;glioblastoma,disease,8,41339360,train |
| GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,8,Mus musculus,Xenium,Xenium,brain,synucleinopathy,normal;disease,8,41545426,test |
| GSE272334,The inflammatory micro-environment induced by targeted CNS radiotherapy is underpined by disruption of DNA methylation,16,Homo sapiens,Visium,Visium,brain,,perturbation;normal,16,40298030,train |
| GSE272337,Xenium spatial transcriptomics reveals C10 tumor transcriptomic changes induced by Smarta cell,2,Mus musculus,Xenium,Xenium,other,neoplasm,disease,2,42313973,train |
| GSE272421,Spatial transcriptomics stereo-seq was used to reveal the functional compartmentalization of Unicentric Castleman Disease.,1,Homo sapiens,Stereo-seq,Stereo-seq,lymph node,Castleman disease,disease,0,,val |
| GSE272564,Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium),4,Mus musculus,Visium,Visium,liver,,disease,4,,train |
| GSE272833,Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma,4,Homo sapiens,Visium,Visium,ovary,squamous cell carcinoma;ovarian cancer;mature teratoma,disease,4,39948701,train |
| GSE272960,EWS-FLI1 Expression in Human Embryonic Mesenchymal Stem Cells Leads to Defective DNA Damage Repair and Ewing Sarcoma,2,Homo sapiens,Visium,Visium,lung;other,Ewing sarcoma,normal;disease,2,41136396,val |
| GSE273275,stRNA-seq of brain glioblastoma sample,2,Homo sapiens,Visium,Visium,brain,brain glioblastoma,disease,2,39933531,train |
| GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],16,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma,disease,16,41876493,train |
| GSE273432,The roles of glioma-associated macrophages/microglia in human GBM,4,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,4,39921277,train |
| GSE273439,Extraction of a Stromal Metastatic Gene Signature in Breast Cancer via Spatial Profiling,4,Mus musculus,Visium,Visium,adipose tissue;lung,breast cancer,disease,4,40065328,train |
| GSE273489,Mapping the genetic landscape establishing a tumor immune microenvironment favorable for anti-PD-1 response in mice and humans (Visium).,4,Mus musculus,Visium,Visium,other,neoplasm,disease,4,40343794,train |
| GSE273530,Programmed cell death-1 receptor deficiency enhances CD30+ T regulatory cell function in Melanoma [Murine NanoString CosMx SMI],1,Mus musculus,CosMx,CosMx,other,melanoma,disease,0,40457060,train |
| GSE273557,Spatial transcriptomic analysis of human dorsoal root ganglia neurons [Xenium],4,Homo sapiens,Xenium,Xenium,peripheral nerve,,normal,0,39496796,train |
| GSE273606,In vivo armed macrophages curb liver metastasis through tumor reactive T cell rejuvenation (MERFISH),2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,liver,metastatic malignant neoplasm in the liver,disease,0,40216735,test |
| GSE273952,GABA promotes resistance to immunotherapy of patients with TLS-positive tumors [Spatial Transcriptomics],8,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,8,,train |
| GSE273978,"CH6824025, potent and selective DDR1 inhibitor, reduces kidney fibrosis in UUO mice",8,Mus musculus,Visium,Visium,kidney,,normal;disease,8,39379147,train |
| GSE274042,Spatiotemporal liver dynamics shapes hepatocellular heterogeneity and impacts in vivo gene engineering [MERFISH],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,liver,,normal,0,,train |
| GSE274051,Spatial transcriptomics of HIV-associated non-Hodgkin lymphomas by EBV status and cell of origin,10,Homo sapiens,Visium,Visium,unknown,Burkitt lymphoma;non-Hodgkin lymphoma;Epstein-Barr virus-associated lymphoproliferative disorder;diffuse large B-cell lymphoma;plasmablastic lymphoma;plasma cell neoplasm;B-cell non-Hodgkin lymphoma,disease,10,41279969,train |
| GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,6,Mus musculus,Visium,Visium,uterus,,perturbation,6,41803091,train |
| GSE274103,Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients,5,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,5,40154487,train |
| GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,14,Homo sapiens,Visium,Visium,adrenal gland,primary aldosteronism;adenoma;hyperaldosteronism,disease,14,37125608;39826326,train |
| GSE274447,In vivo Spatial Perturb-Seq in the mouse brain,1,Mus musculus,Stereo-seq,Stereo-seq,brain,,perturbation,0,41723140,train |
| GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,4,Homo sapiens,Visium,Visium,skin,pyoderma gangrenosum,disease,4,39393505,train |
| GSE274497,Spatial transcriptomics of murine eyelid,1,Mus musculus,Visium,Visium,eye,,normal,1,39955307,train |
| GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],4,Mus musculus,Visium,Visium,ovary,ovarian cancer,disease,4,39372930;41679728,train |
| GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,57,Homo sapiens,Visium,Visium,pancreas;liver;peritoneum;lung;other,pancreatic ductal adenocarcinoma;metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,57,40269162,train |
| GSE274572,Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state,4,Homo sapiens,Visium,Visium,blood vessel,,disease,4,,train |
| GSE274605,Molecular signatures of altered energy metabolism and circadian rhythm perturbations in a model of synucleinopathy,8,Mus musculus,Visium,Visium,brain,synucleinopathy;Parkinson disease,disease,8,41736854,train |
| GSE274617,Single cell transcriptomes of pancreatic pre-invasive lesions and cancer reveal acinar metaplastic cells’ heterogeneity [MERFISH],1,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,pancreas,cancer,disease,0,41758082,train |
| GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],8,Homo sapiens,Xenium,Xenium,peritoneum,cancer,disease,8,,train |
| GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,9,Mus musculus;Homo sapiens,DBiT-seq,DBiT-seq,embryo (whole);lymph node;brain,lymph node disorder;lymphoma;diffuse large B-cell lymphoma,normal;disease,0,39353436,train |
| GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,4,Homo sapiens,Visium,Visium,ovary,ovarian carcinoma,disease,4,40883550,train |
| GSE274665,Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics),4,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,4,39627211,train |
| GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],6,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,6,,train |
| GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,6,Mus musculus,Visium,Visium,brain,glioblastoma,disease,6,41559043,val |
| GSE274767,Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii,2,Mus musculus,Visium,Visium,lung,infectious disease,disease,2,39611685,val |
| GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,12,Mus musculus,Visium,Visium,brain,,perturbation;normal,12,40888470,train |
| GSE274970,Morphogenic accommodations for unidirectional airflow in the chicken lung,1,Gallus gallus,Stereo-seq,Stereo-seq,lung,,normal,0,,train |
| GSE275026,Plaque-induced transcriptional reprogramming of microglia towards lymphoid receptor expression protects against Alzheimer’s disease.,8,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,Alzheimer disease,normal;disease,0,41193812,val |
| GSE275125,Specific pre-plasma cell states and local proliferation at the dark zone – medulla interface characterize germinal center-derived plasma cell differentiation in lymph node (Figure 6),4,Mus musculus,Visium,Visium,lymph node,,normal,4,,train |
| GSE275131,Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD),4,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease;perturbation,4,41539386,test |
| GSE275144,Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Visium],2,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,2,40967215,train |
| GSE275201,Spatial Transcriptomics of Brains Infected with VEEV,2,Mus musculus,Visium,Visium,brain,infectious disease,normal;disease,2,39749347,val |
| GSE275252,The G Protein-Coupled Receptor ADGRG6 Maintains Mouse Growth Plate Homeostasis by Negatively Regulating IHH Signaling,1,Mus musculus,Visium,Visium,bone,,perturbation,1,39236220,train |
| GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras |
| GSE275590,Novel cell-to-cell communications between macrophages and fibroblasts regulate obesity-induced adipose tissue fibrosis [spatial transcriptomics],2,Mus musculus,Visium,Visium,adipose tissue,obesity disorder,normal;disease,2,40063503,train |
| GSE275954,Microglia activation orchestrates CXCL10-mediated CD8+ T cell recruitment to promote aging-related white matter degeneration,9,Mus musculus,MERFISH/MERSCOPE,MERFISH,peripheral nerve,,perturbation |
| GSE276083,Single cell spatial transcriptome and RNA-seq analysis in human lung tissues with mycobacterial infection: Single cell spatial transcriptome,7,Homo sapiens,CosMx,CosMx,lung,mycobacterial infectious disease,disease,0,,train |
| GSE276273,Mouse Skin Xenium In Situ Spatial Gene Expression,1,Mus musculus,Xenium,Xenium,skin,,disease,1,39672169,train |
| GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,9,Homo sapiens,Visium,Visium,lymph node |
| GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,2,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,2,39818911,train |
| GSE276866,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing,8,Mus musculus,Visium,Visium,small intestine |
| GSE276934,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Visium],1,Homo sapiens,Visium HD,Visium HD,lung,pulmonary fibrosis,disease,1,,train |
| GSE277032,An in vivo and in vitro spatiotemporal atlas of human fetal midbrain development,16,Homo sapiens,Visium,Visium,brain,,normal,16,41633979,test |
| GSE277106,10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD),2,Mus musculus,Visium,Visium,small intestine,,normal;perturbation,2,41616823,train |
| GSE277116,Neoadjuvant immunotherapy promotes the formation of mature tertiary lymphoid structures in a remodeled pancreatic tumor microenvironment,27,Homo sapiens,Visium,Visium,lymph node |
| GSE277196,"High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, without in situ Polyadenylation]",1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,41792309,val |
| GSE277197,"High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, with in situ Polyadenylation]",1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,41792309,train |
| GSE277246,Spatial transcriptomics revealed that S1pr2 deletion in keratinocytes increases the MyD88/NF-kB pathway and psoriasis-related cytokine expression in the epidermis,2,Mus musculus,Visium,Visium,skin,psoriasis,disease,2,39391307,train |
| GSE277255,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [STOmics],1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,,val |
| GSE277387,Single-Cell and Spatial Multi-omics Reveal Interferon Signaling in the Pathogenesis of Perianal Fistulizing Crohn’s Disease,6,Homo sapiens,Visium,Visium,other,Crohn disease,disease,5,40608410,train |
| GSE277441,Utilizing combined spatial transcriptomics to elucidate localized immune responses within human coronary arteries throughout the progression of atherosclerosis [CosMx],3,Homo sapiens,CosMx,CosMx,blood vessel,atherosclerosis,disease,0,,train |
| GSE277463,Impaired parvalbumin interneurons in the retrosplenial cortex as the cause of sex-dependent vulnerability in Alzheimer’s disease [Xenium],6,Mus musculus,Xenium,Xenium,brain,Alzheimer disease,normal;disease,0,40305608;42161970,train |
| GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,7,Mus musculus,Visium,Visium,brain,prion disease,normal;disease,7,42120390,train |
| GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,4,Mus musculus,Xenium,Xenium,lung,pulmonary hypertension,normal;disease,4,,train |
| GSE278133,Defective ventral neurogenesis due to midfetal Chd8 mutation drives autistic-like behavior in mice,1,Mus musculus,CosMx,CosMx,brain,,perturbation,0,42203765,test |
| GSE278169,Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics],5,Mus musculus,Visium,Visium,skin,,normal;disease,5,40816279,train |
| GSE278415,Drugless Extracellular Hydrogels Enable the Reprogramming of Malignant Glioblastoma,4,Mus musculus,Visium,Visium,brain,brain neoplasm |
| GSE278431,In situ targeted gene expression analysis of healing skin on SD0 post-wounding in Wildtype and Rnasel knock out wounds,6,Mus musculus,Xenium,Xenium,skin,,perturbation,6,39903537,train |
| GSE278603,Digital reconstruction of spatiotemporal atlas unveils the cellular origins and signaling networks underlying early mouse organogenesis,6,Mus musculus,Stereo-seq,Stereo-seq,embryo (whole),,normal,0,,train |
| GSE278611,Clearance of p21-highly-expressing senescent cells accelerates wound healing,1,Mus musculus,Xenium,Xenium,skin,,perturbation,1,39537987,val |
| GSE278614,Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx],3,Homo sapiens,CosMx,CosMx,kidney,,normal,0,42533102,test |
| GSE278621,Spatial transcriptome profile of liver tissue from a patient with metabolic dysfunction-associated steatotic liver disease,1,Homo sapiens,Visium,Visium,liver,metabolic dysfunction-associated steatotic liver disease,disease,1,42329773,train |
| GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,4,Homo sapiens,Visium,Visium CytAssist,liver,hepatitis,normal;disease,4,39592394,train |
| GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,21,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,21,40680743,train |
| GSE278766,Comparison of CosMx and GeoMx profiling performed on the same human kidney tissues [CosMx],1,Homo sapiens,CosMx,CosMx,kidney,kidney neoplasm,disease,0,40311874,train |
| GSE278848,Visium Spatial Transcriptomics of the Human Hypothalamus,9,Homo sapiens,Visium,Visium,brain,,normal,0,39910307,test |
| GSE278936,Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer,52,Homo sapiens,Visium,Visium,prostate |
| GSE278969,Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium],8,Homo sapiens,Xenium,Xenium,other,arthritic joint disease,disease,0,40601776,train |
| GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],18,Homo sapiens,Visium,Visium,brain,multiple sclerosis,normal;disease,18,39501036,train |
| GSE279255,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,1,Mus musculus,Visium HD,Visium HD,small intestine,infectious disease,disease,1,39843748,train |
| GSE279273,Spatially Resolved Transcriptomic Signatures of Hippocampal Subregions and Arc-Expressing Ensembles in Active Place Avoidance Memory [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,brain,,perturbation,2,38260257,train |
| GSE279405,Spatial transcriptomical analysis of livers from patients with COVID19,3,Homo sapiens,Visium,Visium,liver,COVID-19,disease,3,39709771,train |
| GSE279507,Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization,5,Mus musculus,Visium,Visium,pancreas,preneoplastic lesion,disease,5,,train |
| GSE279576,Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia,6,Homo sapiens,Visium,Visium,bone marrow |
| GSE279676,Single cell deletion of the transcription factors Sox9 and Trps1 reveals novel functions in adult cortical astrocytes [Spatial transcriptomics],4,Mus musculus,Visium,Visium,brain,,perturbation,4,39610085,test |
| GSE280088,Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing.,4,Mus musculus,Xenium,Xenium,skin |
| GSE280177,Molecular Cartography of the Human and Mouse Down Syndrome Brain [MERFISH],12,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,Down syndrome |
| GSE280313,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [VisiumV2],3,Homo sapiens,Visium,Visium,colon,malignant colon neoplasm,disease;normal,3,40473992,train |
| GSE280314,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [Xenium],3,Homo sapiens,Xenium,Xenium,colon,malignant colon neoplasm,disease,3,40473992,test |
| GSE280315,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [VisiumHD],5,Homo sapiens,Visium HD,Visium HD,colon,malignant colon neoplasm,disease;normal,5,40473992,test |
| GSE280316,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus,10,Homo sapiens,Visium,Visium,brain,,normal,10,,test |
| GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],8,Mus musculus,Xenium,Xenium,heart,,perturbation |
| GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],13,Homo sapiens,Xenium,Xenium,brain,,normal,13,,train |
| GSE280515,Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.,3,Mus musculus,Visium,Visium,liver,,normal;perturbation,3,39862865,train |
| GSE280570,A temporal cortex cell atlas highlights gene expression dynamics during human brain maturation [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,brain,,normal,4,39567748,train |
| GSE280634,Xenium Spatial Transcriptomics with human breast cell typing panel in human treatment naïve primary PDAC,8,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,0,39535921,val |
| GSE280709,Spatial component of: CELSR3 deficiency leads to tic-related behaviors and dopaminergic alterations in the striatum,4,Mus musculus,Visium,Visium CytAssist |
| GSE280737,Functional Integration of Autologous Tissue-Engineered Grafts in a Pre-Clinical Esophageal Defect Model,11,Sus scrofa,Visium,Visium,esophagus,,perturbation;normal,11,,train |
| GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],6,Mus musculus,Xenium,Xenium,brain;liver;small intestine,melanoma |
| GSE280895,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,17,Mus musculus |
| GSE280982,Single-cell sequencing across radiation treatment timepoints in head and neck cancer,2,Homo sapiens,Visium,Visium,oral cavity,lip and oral cavity carcinoma |
| GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,10,Homo sapiens,Visium,Visium,brain;spinal cord,diffuse intrinsic pontine glioma,disease,10,39972389,train |
| GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,4,Mus musculus,Visium,Visium,skin,,perturbation,4,40627455,train |
| GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],12,Mus musculus,Xenium,Xenium,lymph node,,perturbation,12,40998762,val |
| GSE281288,NFE2-driven neutrophil polarization promotes pancreatic cancer liver metastasis progression,2,Homo sapiens,Visium,Visium,pancreas |
| GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],28,Homo sapiens,Visium,Visium,bone,,normal,28,40866708,test |
| GSE281488,In situ single-cell profiling of a brain metastasis from a HER2+ Breast Cancer Patient and 8 primary tumors from TNBC patients.,9,Homo sapiens,CosMx,CosMx,brain;breast,breast cancer |
| GSE281489,In situ single-cell profiling of lung metastases from the MMTV-PyMT mouse model of metastatic breast cancer,1,Mus musculus,CosMx,CosMx,lung,breast cancer,disease,0,41923644,train |
| GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,17,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,17,41950768,val |
| GSE281796,A blueprint for local and distal glioblastoma invasion programs,2,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,2,41844611,test |
| GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,6,Homo sapiens,Visium,Visium,head and neck,malignant tumor of neck |
| GSE282002,Cell competition drives bronchiolization and pulmonary fibrosis,5,Mus musculus,Visium,Visium,lung,pulmonary fibrosis,disease,5,39639058,val |
| GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,4,Homo sapiens |
| GSE282059,"Nanostring CosMx 6,000-plex RNA profiling of human kidney nephrectomy specimens",1,Homo sapiens,CosMx,CosMx,kidney,ureteral obstruction,disease,0,40399382,train |
| GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",7,Homo sapiens,Xenium,Xenium,colon,ulcerative colitis |
| GSE282124,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Merscope]",1,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,colon,ulcerative colitis,disease,0,42262875,train |
| GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,65,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease;normal,65,41659563,train |
| GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],105,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,105,41533516,train |
| GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,17,Mus musculus,Visium |
| GSE282635,Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomics [Spatial Transcriptomics],1,Homo sapiens,Visium,Visium,heart,cardiomyopathy,disease,1,40184463,train |
| GSE282639,Ectopic expression of MUC5B in the respiratory bronchiole initiates ER stress in the IPF lung,43,Homo sapiens,CosMx,CosMx,lung,idiopathic pulmonary fibrosis,normal;disease,0,41091081,train |
| GSE282714,SPARROW reveals microenvironment zone-specific cell states in healthy and diseased tissues.,6,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,tonsil |
| GSE282721,FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment,1,Homo sapiens,CosMx,CosMx,prostate,prostate cancer,disease,0,41904157,train |
| GSE282726,FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment,4,Mus musculus,Visium,Visium,prostate,prostate cancer,disease,4,41904157,train |
| GSE282867,Fronto-insular circuit mechanisms of accelerated intermittent theta burst stimulation,5,Mus musculus,Slide-seq,Slide-seq,brain,,perturbation,0,42102818,train |
| GSE282928,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease,3,Homo sapiens,Visium HD,Visium HD,brain,Alzheimer disease;amyloidosis,disease,0,40050704,train |
| GSE283022,Type I Interferon Induced Apoptosis Drives Chronic Wounds in ISG15 deficiency,4,Homo sapiens,Visium,Visium,skin,,normal;disease,4,41743834,train |
| GSE283052,Spatial transcriptomics of 12 tumor tissues from colorectal cancer,12,Homo sapiens,Visium,Visium,colon,colorectal carcinoma,disease,12,41537001,train |
| GSE283145,Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,skin |
| GSE283159,SPTEdU-seq: Parallel optics-free newborn cell tracking and spatial total transcriptomics decipher spatiotemporal dynamics across tissues and species,12,Mus musculus,Slide-seq,Slide-seqV2 |
| GSE283227,CDK12/13 inactivation triggers STING-mediated antitumor immunity in preclinical models,4,Homo sapiens,Visium HD,Visium HD,bladder;lymph node,prostate adenocarcinoma,disease,4,40955658,train |
| GSE283269,Spatial Gene Expression of Human Coronary Arteries Revealed the Molecular Features of Diffuse Intimal Thickening in Explanted Hearts,6,Homo sapiens,Visium,Visium,blood vessel,,normal;disease,6,40076574,test |
| GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,168,Mus musculus,Visium |
| GSE283302,Spatial Transcriptomic Profiling of the Mouse Adrenal Gland and Adjacent Adipose Tissue,1,Mus musculus,Visium,Visium,adrenal gland,,normal,1,41442035,train |
| GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,2,Mus musculus,BMK S1000,BMKMANU S1000,lung,malaria,normal;disease,2,,train |
| GSE283411,Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential.,2,Mus musculus,Slide-seq,Curio Seeker,brain,,normal,0,39952245,train |
| GSE283412,Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.,8,Homo sapiens,Visium,Visium,breast,breast cancer,disease,8,40790295,train |
| GSE283418,Spatial molecular profiling of amygdalar neurons enables precision pharmacology against pain unpleasantness,10,Mus musculus,Molecular Cartography,Molecular Cartography,brain,,normal,0,,train |
| GSE283435,Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control,2,Mus musculus,Visium HD,Visium HD,kidney,,perturbation,2,40087269,train |
| GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],6,Homo sapiens,Xenium,Xenium,brain,high grade astrocytic tumor |
| GSE283832,"A cycling, progenitor-like cell population at the root of atypical teratoid rhabdoid tumor subtype differentiation trajectories [Xenium Spatial_Transcriptomics]",7,Homo sapiens,Xenium,Xenium,brain,"atypical teratoid rhabdoid tumor, SHH-activated;atypical teratoid rhabdoid tumor, TYR-activated |
| GSE283863,Cranial radiotherapy profoundly affects glia without inducing widespread cellular senescence,1,Mus musculus,CosMx,CosMx,brain,,perturbation,0,40518745,train |
| GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],4,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,perturbation,0,41520334,test |
| GSE283883,Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip,1,Mus musculus,Other,"other (named in GEO, not in list)",liver,,normal,0,,train |
| GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,35,Homo sapiens,Visium,Visium,colon |
| GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,4,Mus musculus,Visium,Visium,brain,glioblastoma;glioma,disease,4,40991701,train |
| GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,3,Homo sapiens,Visium,Visium,heart,,normal,3,39927812,train |
| GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),17,Homo sapiens,MERFISH/MERSCOPE,MERFISH,brain,multiple sclerosis,disease;normal,0,,train |
| GSE284032,Integration and annotation of spatial multi-omic data with DIRAC highlights spatial organization of lymphoid organs,2,Mus musculus,Stereo-seq,Stereo-seq,thymus |
| GSE284052,A spatiotemporal atlas of giant-cell formation during Meloidogyne incognita infection in tomato roots,3,Solanum lycopersicum,BMK S1000,BMKMANU S1000/S3000,plant,infectious disease,disease,0,42581385,train |
| GSE284089,Spatial multi-modal atlas of bone tissue from human femur,1,Homo sapiens,Visium,Visium,bone,,normal,1,39817519,train |
| GSE284137,Tissue and cellular spatiotemporal dynamics in colon aging,395,Mus musculus,ST (legacy),ST (legacy),colon,,normal,0,41125832,train |
| GSE284353,Comprehensive sequencing of the lung neuroimmune landscape in response to asthmatic induction,4,Mus musculus,Xenium,Xenium,lung |
| GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,prostate,,normal;perturbation,8,39763898;40974890,train |
| GSE284625,spatial transcriptomics of mouse brain before and after activation,32,Mus musculus,Visium,Visium,brain,,normal;perturbation;not stated,32,42000729,train |
| GSE284695,Obesity-mediated intratumoral innervation increases pancreatic cancer tumorigenesis [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,pancreas,malignant pancreatic neoplasm |
| GSE284741,The XCL1-XCR1 axis supports intestinal tissue residency and anti-tumor immunity,1,Mus musculus,Xenium,Xenium,small intestine,infectious disease,disease,0,39841133,train |
| GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,8,Mus musculus,Xenium,Xenium,lung,acute myeloid leukemia |
| GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],22,Mus musculus,Visium,Visium,other,colorectal carcinoma,disease,22,40171265,train |
| GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],12,Mus musculus,Xenium,Xenium,small intestine,,normal,12,40112802,train |
| GSE285158,Charting the transition from in vitro production through in vivo diversification of human glial progenitor cells,6,Homo sapiens,Xenium,Xenium,brain,,perturbation;normal,6,42026046,train |
| GSE285226,Deciphering Spatial Transcriptomic Signatures Reveals Insights into Perifascicular Atrophy in Dermatomyositis,2,Homo sapiens,Visium,Visium,skeletal muscle,adult dermatomyositis |
| GSE285246,Spatially resolved atlas of IPF fibroblastic foci identifies that PAK2 kinase activation is involved in fibrogenesis,9,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis,disease,9,40675771,test |
| GSE285304,Spatially resolved m6A profiling using m6A-ARTR-DBiT [spatial],6,Mus musculus,DBiT-seq,m6A-ARTR-DBiT |
| GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,4,Mus musculus,Xenium,Xenium,other,lung neoplasm |
| GSE285505,Fibroblast-Derived Thrombospondin 2 Shapes the Immune-Exclusionary Environment at Invasive Fronts in Colorectal Cancer [Visium,4,Homo sapiens,Visium,Visium,colon,colorectal carcinoma,disease,4,41276505,val |
| GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,6,Homo sapiens,Visium,Visium,bladder,cancer,disease;normal,6,,val |
| GSE285858,Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics],16,Mus musculus,Visium,Visium,brain,Huntington disease,normal;disease,16,40482637;41456279,train |
| GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],8,Homo sapiens,Xenium,Xenium,peripheral nerve,"chronic inflammatory demyelinating polyradiculoneuropathy;polyneuropathy, inflammatory demyelinating, chronic;polyneuropathy",disease;normal,8,40849297,val |
| GSE285990,Chemotherapy triggers immune evasion by fostering LEPR+ Kupffer cell differentiation in liver metastases [RNA-seq],2,Mus musculus,Stereo-seq,Stereo-seq,liver,metastatic malignant neoplasm in the liver,disease,0,41687606,train |
| GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,4,Mesocricetus auratus,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,4,,train |
| GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,4,Mus musculus,Xenium,Xenium,kidney,,normal,4,,train |
| GSE286085,Fibroblast orchestration of inflammaging via NF-kB activation (Xenium Analysis),1,Mus musculus,Xenium,Xenium,lung,,perturbation,1,41256682,train |
| GSE286184,Single-nucleus transcriptomic landscape of human glomerular diseases [Xenium],20,Homo sapiens,Xenium,Xenium,kidney,diabetic kidney disease,normal;disease,0,,test |
| GSE286215,A temporal map of B cell diversification mechanisms in mice,2,Mus musculus,Stereo-seq,Stereo-seq,spleen,infectious disease,disease,0,42297974,test |
| GSE286227,Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient,2,Homo sapiens,Visium HD,Visium HD,lung,interstitial lung disease;syndromic disease,disease,2,,train |
| GSE286250,Decoding transcriptional identity during Neuron-Astroglia Cell Fate driven by RAR-specific agonists [Spatial transcriptomics],4,Mus musculus,ST (legacy),ST (legacy),brain,,perturbation,0,41255712,train |
| GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,7,Homo sapiens,Xenium,Xenium,liver,hamartoma,normal;disease,7,,train |
| GSE286413,Spatial multi-omics defines a shared glioblastoma infiltrative signature at the resection margin [10x Spatial],2,Homo sapiens,Visium,Visium,brain,brain neoplasm |
| GSE286452,Spatiotemporal dynamics of the lymph adaptive immune repertoire in response to viral infection,6,Mus musculus,Slide-seq,Slide-seq,lymph node,vaccinia,normal;disease,0,39975238,train |
| GSE286477,Dendritic Cell Immunotherapy with Homologous Antigenic Loading as Adjuvant Treatment for Glioblastoma: Phase I Trial Analysis [Spatial Transcriptome],6,Homo sapiens,Visium,Visium,brain,brain neoplasm |
| GSE286935,Analysis of B cell neighborhoods via single cell spatial transcriptomics in head and neck cancer patients,1,Homo sapiens,CosMx,CosMx,head and neck,head and neck squamous cell carcinoma |
| GSE286964,Somatic mutations distinguish melanocyte subpopulations in human skin,2,Homo sapiens,Xenium,Xenium,skin,,normal,2,,train |
| GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,4,Mus musculus,Visium,Visium,brain,,normal,4,40563967,test |
| GSE287278,A spatial transcriptomics dataset of the endometrium from repeated implantation failure patients,8,Homo sapiens,Visium,Visium,uterus,,normal;disease,8,41162434,train |
| GSE287384,Gas6-Axl signaling drives oral regenerative wound repair,4,Mus musculus,Visium,Visium,skin |
| GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),8,Homo sapiens,Visium,Visium,lung,lymphangioleiomyomatosis,disease,8,,test |
| GSE287472,LUAD spatial transcriptomics,1,Homo sapiens,CosMx,CosMx,lung,lung adenocarcinoma,disease,0,42358378,train |
| GSE287499,Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc,2,Mus musculus,Visium HD,Visium HD,other,,normal;perturbation,2,42236482,train |
| GSE287979,Systematic inference of super-resolution cell spatial profiles from histology images,1,Homo sapiens,Visium,Visium,stomach,,disease,1,39984438,train |
| GSE288178,Spatially resolving chromatin landscapes in formalin-fixed paraffin-embedded tissues,1,Homo sapiens,DBiT-seq,Patho-DBiT,lymph node,diffuse large B-cell lymphoma,disease,0,42067542,train |
| GSE288200,A rewired myeloid niche in spleen establishes stress erythropoiesis,1,Mus musculus,Visium,Visium,spleen,,perturbation,1,,train |
| GSE288235,"Clonal cell states link gastroesophageal junction tissues, metaplasia, and cancer [Spatial transcriptomics]",3,Homo sapiens,Other,seqFISH,esophagus,Barrett esophagus,disease,0,36747708;41360789,test |
| GSE288365,Molecular Drivers of Neuroinflammation in Amyotrophic Lateral Sclerosis,18,Homo sapiens,Visium,Visium,spinal cord,amyotrophic lateral sclerosis;lateral sclerosis;hereditary motor neuron disease,disease,0,42135512,train |
| GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,8,Homo sapiens,Visium,Visium,peritoneum |
| GSE288576,Effect of Pdk4 smooth muscle cell-specific knockout on atherosclerosis,1,Mus musculus,Slide-seq,Slide-seq,blood vessel,atherosclerosis,disease,0,,train |
| GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,9,Homo sapiens,Visium,Visium,lung,pulmonary sarcoidosis,disease,9,,val |
| GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],6,Mus musculus,Xenium,Xenium,skeletal muscle,,normal;perturbation,6,40504614,val |
| GSE288758,Spatial dynamics of the tumor microenvironment associated with emerging resistance to targeted therapy in EGFR-mutated non–small cell lung cancer,2,Homo sapiens,Visium HD,Visium HD,lung,non-small cell lung carcinoma,disease,2,41152910,train |
| GSE288888,"Spatial Transcriptomics, Histopathology, and Magnetic Resonance Subfield Segmentation of Hippocampal Sclerosis Compared to Normal Hippocampus: A Proof-of-Concept Study",2,Homo sapiens,Visium,Visium,brain,temporal lobe epilepsy,normal;disease,2,,train |
| GSE289001,Spatial single cell transcriptomic analysis of a lineage-traceable mouse model of DICER1 Syndrome informs tumor developmental hierarchy [Xenium],71,Mus musculus,Xenium,Xenium,kidney,DICER1-related tumor predisposition |
| GSE289052,Overactivation of SHH signaling during embryonic choroid plexus development induces a cascade of dedifferentiation and carcinoma formation.,6,Mus musculus,Visium,Visium,brain,carcinoma,disease,6,42629571,train |
| GSE289054,Flexible Nanoelectronics Show Reduction of Arrhythmogenesis in Transplanted Human Cardiomyocytes,16,Homo sapiens,Slide-seq,Slide-seqV2,heart,,perturbation,0,41100583,train |
| GSE289170,"Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]",6,Mus musculus,Visium,Visium,placenta,,normal,6,41058694,test |
| GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,8,Mus musculus,Xenium,Xenium,skin,,perturbation,8,40715139,train |
| GSE289299,Syrah: a pipeline to maximize spatial transcriptomics data output,1,Schmidtea mediterranea,Slide-seq,Slide-seqV2,other,,normal,0,42081452,train |
| GSE289363,Intratumoral spatiotemporal heterogeneity of HPV status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record,3,Homo sapiens,Visium,Visium,tonsil,oropharynx squamous cell carcinoma,disease,3,41943047,train |
| GSE289496,Granzyme K CD8⁺ T cells with tissue-resident features promote intestinal inflammation in patients with Crohn’s disease,1,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,1,42409960,train |
| GSE289717,Vesicles Secreted by Renal Cell Carcinoma Cells Cause Vascular Endothelial Cells to Express PSMA and Drive Tumor Progression,1,Homo sapiens,Visium HD,Visium HD,kidney,,disease,1,39936957,train |
| GSE289745,Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics],11,Homo sapiens,Visium,Visium,skin,skin squamous cell carcinoma,disease,11,40836096,train |
| GSE289934,Glioma-neuronal circuit remodeling induces regional immunosuppression [visium],2,Mus musculus,Visium,Visium,brain,glioma,disease,2,40404658,train |
| GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],11,Homo sapiens,Xenium,Xenium,head and neck,oropharyngeal carcinoma,disease,11,42288489,train |
| GSE290094,Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium],7,Mus musculus,Visium,Visium,heart,diabetes mellitus,disease,7,41203872,train |
| GSE290287,Spatial Zonation of Pro- and Anti-inflammatory Tumor Macrophages After Anti-CD40,1,Mus musculus,Visium HD,Visium HD,other,neoplasm,disease,1,41176316,test |
| GSE290324,Ontogeny-independent expression of LPCAT2 in granuloma macrophages during experimental visceral leishmaniasis [Spatial Transcriptomics],7,Mus musculus,Visium,Visium,liver,visceral leishmaniasis,disease;normal,7,41862629,train |
| GSE290338,Spatial Zonation of Pro- and Anti-inflammatory Tumor Macrophages After Anti-CD40 II,2,Mus musculus,Visium HD,Visium HD,other,neoplasm,disease,2,41176316,train |
| GSE290577,Dynamic responses to rejection in the transplanted human heart revealed through spatial transcriptomics,2,Homo sapiens,Xenium,Xenium,heart,,not stated,2,,train |
| GSE290670,Spatial Transcriptome Profiling Reveals Molecular Features of Invasive Lobular Carcinoma in Breast Cancer.,8,Homo sapiens,Visium,Visium,breast,invasive lobular breast carcinoma,disease,8,,train |
| GSE290724,Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [Spatial transcriptomics],2,Homo sapiens,Visium HD,Visium HD,brain,glioblastoma,disease,0,40381621,val |
| GSE290762,Salmonella typhimurium targets distal colonocytes to trigger infection [Spatial Transcriptomics],4,Mus musculus,BMK S1000,BMKMANU S1000,colon,infectious disease,normal;disease,4,41277366,train |
| GSE290924,Integrative spatially-resolved multi-omics analysis reveals metabolic evolution of the transition to invasive breast cancer,6,Homo sapiens,Other,DynaSpatial,breast,invasive breast carcinoma,disease,6,,train |
| GSE291088,CytoSignal Detects Locations and Dynamics of Ligand-Receptor Signaling at Cellular Resolution from Spatial Transcriptomic Data,1,Mus musculus,Visium HD,Visium HD,embryo (whole),,normal,1,,train |
| GSE291200,Topological velocity inference from spatial transcriptomic data,1,Homo sapiens,Slide-seq,Slide-seq,embryo (whole),,normal,0,40670711,train |
| GSE291210,Spatial transcriptomics profile of mammary gland tumours in MMTV-PyMT mouse model of breast cancer [MERFISH],3,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,breast,breast cancer,disease,0,41781391,train |
| GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,17,Homo sapiens,Xenium,Xenium,unknown |
| GSE291308,"Site-specific phosphorylation of ERα determines sex-dependent metabolic, reproductive, and body compositional phenotypes in mice",1,Mus musculus,CosMx,CosMx,uterus,,perturbation,0,41438071,train |
| GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,3,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,3,,train |
| GSE291385,Hepatic hematopoiesis hijacked by tumor metastasis promotes immunosuppression,1,Mus musculus,Stereo-seq,Stereo-seq,liver,metastatic malignant neoplasm in the liver,disease,0,,train |
| GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],8,Mus musculus,Xenium,Xenium,spinal cord,,normal;perturbation,8,41505538,train |
| GSE291687,KRAS G12C inhibition combined with CD47 and immune checkpoint blockage overcomes intrinsic resistance to concomitant KRAS G12C and immune checkpoint inhibitor therapy,2,Mus musculus,Visium HD,Visium HD,lung,lung neoplasm,disease,2,40885190,train |
| GSE291688,Xenium data for a comparison of spatial transcriptomics technologies for medulloblastoma cryosections,4,Homo sapiens,Xenium,Xenium,brain,,disease,4,40542418,val |
| GSE291813,Spatial crosstalk modeling of the tumor microenvironment uncovers CCR5-mediated glia-to-glia signaling as a key regulator of brain metastases,8,Mus musculus,Visium,Visium,brain,breast cancer,disease,8,40960488,train |
| GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,10,Homo sapiens,Xenium,Xenium,skin,Schnitzler syndrome,disease,10,40393905,train |
| GSE292156,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation,3,Homo sapiens,Stereo-seq,Stereo-seq,skin,,normal,0,40449655,train |
| GSE292268,Spatial single-cell transcriptomics of MASLD-affected liver biopsy samples.,2,Homo sapiens,CosMx,CosMx,liver,metabolic dysfunction-associated steatotic liver disease,disease,0,40262132,train |
| GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,18,Homo sapiens,Visium,Visium,brain;lymph node |
| GSE292394,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation [MERFISH],1,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,skin,,normal,0,40449655,test |
| GSE292706,TMPRSS11B promotes an acidified microenvironment and immune suppression in squamous lung cancer,1,Mus musculus,Visium,Visium,lung,squamous cell lung carcinoma |
| GSE292791,Cosmx Spatial Analysis of whole brain slices and ventral pallidum,1,Mus musculus,CosMx,CosMx,brain,,normal,0,40240618,train |
| GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,5,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis,normal;disease,5,,train |
| GSE293043,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Stereo-seq],3,Homo sapiens,Stereo-seq,Stereo-seq,adrenal gland,,normal,0,,train |
| GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,26,Homo sapiens,Visium,Visium,other |
| GSE293124,Concurrent genetic and non-genetic resistance mechanisms to KRAS inhibition in CRC,14,Homo sapiens,CosMx,CosMx,unknown |
| GSE293144,A Deep Dive into the Functional and Spatial Heterogeneity of Lung Interstitial Macrophages [Xenium],2,Mus musculus,Xenium,Xenium,lung,,perturbation |
| GSE293199,A visual–omics foundation model to bridge histopathology image with transcriptomics,1,Homo sapiens,Xenium,Xenium,breast,triple-negative breast carcinoma,disease,1,40442373,train |
| GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],11,Homo sapiens,Visium,Visium,blood vessel,diabetes mellitus,normal;disease,11,42018669,train |
| GSE293582,"Retinoic acid drives cell fate specification, maturation and retinal regionality in human retinal organoids [Visium]",4,Homo sapiens,Visium,Visium,eye,,normal,0,42031716,train |
| GSE293759,Spatial and Functional Specialization of Human Splenic Innate Lymphoid Cells [Xenium],3,Homo sapiens,Xenium,Xenium,spleen,,normal,0,,train |
| GSE293783,An organoid model of the human adrenal cortex identifies drivers of steroidogenesis and zonation [spatial],2,Homo sapiens,Visium HD,Visium HD,adrenal gland,,normal,2,,train |
| GSE293800,Cancer agnostic potential of CAR T cells targeting the urokinase plasminogen activator receptor,1,Homo sapiens,Xenium,Xenium,pancreas,,normal,1,41916312,train |
| GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,10,Homo sapiens,Visium,Visium,brain,Lewy body dementia,normal;disease,10,41588135,train |
| GSE293970,Conversion of Th17 into exTh17 sustains rheumatoid-like IL-17-independent inflammatory arthritis [Xenium],3,Homo sapiens,Xenium,Xenium,other,arthritic joint disease,disease,1,41202149,val |
| GSE294006,Hypoxia shapes both therapeutic response and resistance in metastatic clear cell renal cell carcinoma [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,3,42242232,train |
| GSE294097,P301S Mutant Tau-Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3β Inhibitors with Anti-Neurodegenerative Efficacy,4,Danio rerio,Stereo-seq,Stereo-seq,brain,tauopathy,disease;normal,0,,val |
| GSE294120,Study on the Effects of Retinoids on UVR-Induced Skin Photoaging [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,skin,,disease;perturbation,2,41644086,val |
| GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,6,Ambystoma mexicanum,Xenium,Xenium,other,,normal;perturbation,6,,train |
| GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,8,Mus musculus,Visium,Visium,lung,,normal;perturbation,8,40336950,train |
| GSE294237,Single-Cell Multimodal Profiling Highlights Persistent Aortic Smooth Muscle Cell Changes in Diabetic Mice Despite Glycemic Control,1,Mus musculus,Xenium,Xenium,blood vessel,diabetes mellitus,disease,1,41641545,test |
| GSE294277,Integrative single cell RNA-sequencing and spatial transcriptomics uncovers distinct macrophage-fibroblast cross-talk in human hip synovium between patients with femoroacetabular impingement and osteoarthritis,10,Homo sapiens,Visium,Visium,other,osteoarthritis,disease,10,41524472,test |
| GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,37,Homo sapiens,Visium,Visium,unknown,colorectal cancer,disease,37,42425074,train |
| GSE294392,A four-dimensional spatial transcriptome atlas of barley caryopsis development and germination,35,Hordeum vulgare,Visium,Visium,plant,,normal,35,42015541,val |
| GSE294442,Bioengineered 3D human heart valve tissues with enhanced maturational properties for disease modelling and therapeutic applications [spatial transcriptomics],1,Homo sapiens,Stereo-seq,Stereo-seq,heart,,perturbation,0,,train |
| GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,32,Homo sapiens,Xenium,Xenium,blood vessel,,disease;normal,32,41413386,train |
| GSE294469,Spatially organized progenitors in the zebrafish heart field determine cardiovascular patterning [MERFISH],2,Danio rerio,MERFISH/MERSCOPE,MERSCOPE,embryo (whole),,normal,0,41290702,train |
| GSE294669,Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia,13,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma |
| GSE294759,Application of spatial transcriptomics across organoids for a high-resolution spatial whole-transcriptome benchmarking dataset,9,Mus musculus |
| GSE294765,A skeletal muscle atlas shows neuromuscular junction adaptations to growth and atrophy,6,Mus musculus,Visium,Visium,skeletal muscle,,perturbation |
| GSE294814,Spatially resolved profiling of host and bacteria RNAs in mammalian tissue,7,Mus musculus,DBiT-seq,microDBiT,colon |
| GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,5,Homo sapiens,Visium,Visium CytAssist |
| GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,9,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,disease,9,40393992,train |
| GSE295043,A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate,8,Mus musculus,Visium,Visium,prostate,,perturbation,8,40974890,train |
| GSE295060,Gain-of-function PPM1D mutations attenuate ischemic stroke,2,Mus musculus,Visium,Visium,brain,cerebral artery occlusion |
| GSE295061,Utx (Kdm6a) promotes differentiation non-catalytically in somatic self-renewing epithelia [Xenium],2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,40372430,train |
| GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,16,Homo sapiens,Visium,Visium,peripheral nerve,diabetes mellitus,disease,16,40325011,train |
| GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],4,Homo sapiens,Visium,Visium,brain,,normal;disease,4,42068085,train |
| GSE295275,"Genomic and transcriptomic feature of HBV integration in treatment-naïve, HBeAg-positive children with chronic HBV infection",2,Homo sapiens,Visium,Visium,liver,infectious disease,disease,2,,val |
| GSE295606,Dermal adipocytes activate hair follicle stem cells through metabolic communication [SP],2,Mus musculus,Visium HD,Visium HD,skin,,normal,0,41130201,train |
| GSE295619,"Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing (Spatial Transcriptomics, part 2)",2,Homo sapiens,Visium,Visium,lung,pulmonary fibrosis,disease,2,40719154,train |
| GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,12,Mus musculus,Xenium,Xenium,brain,,normal,12,40903586,train |
| GSE295815,The DLX/Notch axis is necessary for spatiotemporal regulation of neural cell fate,9,Mus musculus,Stereo-seq,Stereo-seq,brain,,normal;perturbation,0,,train |
| GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],12,Homo sapiens,Xenium,Xenium,adipose tissue,obesity disorder;overnutrition,disease;normal,12,40634602,train |
| GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],16,Mus musculus,Visium,Visium,other,neoplasm,disease,16,,train |
| GSE296053,Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction,4,Mus musculus,Xenium,Xenium,small intestine,,normal,4,42129565,train |
| GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,8,Mus musculus,Xenium,Xenium,brain,,normal,8,40780964,test |
| GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],4,Mus musculus,Xenium,Xenium,prostate,,perturbation,4,,train |
| GSE296301,Transient Senescence Following Myocardial Infarction: Characterization and Functional Implications in Cardiac Remodeling [SpatialTranscriptome],2,Mus musculus,Visium,Visium,heart,myocardial infarction,disease,2,,train |
| GSE296331,Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Xenium],8,Homo sapiens,Xenium,Xenium,small intestine,Crohn disease,disease;normal,8,40967215,val |
| GSE296375,Region- and cell type-specific changes in gene expression in the cerebellum after classical fear conditioning [Spatial Transcriptomics],3,Mus musculus,Visium,Visium,brain,,normal;perturbation,3,42032255,train |
| GSE296429,Spatial transcriptomic analysis of transplanted vascularized lung organoids,1,Homo sapiens,Slide-seq,Slide-seq,lung,,normal,0,,train |
| GSE296452,IL-1 Signaling Blockade in Human Lymphocytic Myocarditis,2,Homo sapiens,Visium,Visium,heart,myocarditis,disease,2,40600280,train |
| GSE296454,A spatio-cellular map of the mouse nodose ganglia,3,Mus musculus,Slide-seq,Slide-seq,head and neck,,normal,0,42483274,test |
| GSE296517,Interrogating the Synergistic Potential of Gemcitabine and Focused Ultrasound–Induced Thermal Ablation in Breast Cancer: Insights from the BR54 Trial via Spatial Transcriptomics,3,Homo sapiens,CosMx,CosMx,breast,triple-negative breast carcinoma |
| GSE296545,Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model,4,Mus musculus,Visium,Visium,liver,hepatocellular carcinoma |
| GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,20,Homo sapiens,Xenium,Xenium,brain,brain neoplasm |
| GSE296581,Mouse uterine gene expressions during decidual processes [Visium],4,Mus musculus,Visium,Visium,uterus,,normal;perturbation,4,42154563,train |
| GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,6,Mus musculus,Visium,Visium,pancreas,acute pancreatitis,disease,6,40404099,train |
| GSE296613,Clearance of intracranial debris by ultrasound reduces inflammation and improves outcomes in hemorrhagic stroke models,4,Mus musculus,Stereo-seq,Stereo-seq,brain,hemorrhagic stroke |
| GSE296623,Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning,1,Homo sapiens,Visium HD,Visium HD,other,breast cancer,disease,1,40938748,train |
| GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,36,Homo sapiens,Visium,Visium,pancreas |
| GSE296660,Polyamines regulate adaptive antitumor immunity by functional specialization of regulatory T cells [Visium],2,Mus musculus,Visium,Visium,other,melanoma,disease,2,40749666,train |
| GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],21,Homo sapiens,Visium,Visium,brain,,normal,21,42241279,train |
| GSE296797,CD38+CD93+ microglia and macrophages drive neuroinflammation through glycolysis-histone lactylation axis in multiple sclerosis model mice,5,Mus musculus,Visium,Visium,spinal cord,demyelinating disease of central nervous system |
| GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],4,Homo sapiens,Xenium,Xenium,other |
| GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RNAseq],12,Mus musculus,BMK S1000,BMKMANU S3000,small intestine |
| GSE296897,High-resolution spatial transcriptomics of DARLIN mouse [CRISPR array amplicon],36,Mus musculus,BMK S1000,BMKMANU S1000/S3000,small intestine |
| GSE296975,Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium],4,Sus scrofa,Visium,Visium,placenta,,normal,4,40875599,train |
| GSE296982,Single cell map of the adult female mouse urethra reveals epithelial and stromal macrophages with distinct functional identities,1,Mus musculus,Xenium,Xenium,other,,normal,1,40907791,train |
| GSE297058,Hereditary Chronic Pancreatitis Induced Plasticity Cooperates with Mutant Kras in Early Pancreatic Carcinogenesis,2,Mus musculus,Visium HD,Visium HD,pancreas,hereditary chronic pancreatitis,normal;disease,2,41419303,train |
| GSE297064,Targeting circulating mechanoresponsive monocytes and macrophages to reduce fibrosis,2,Homo sapiens,Visium,Visium,skin,,not stated |
| GSE297068,A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain,6,Mus musculus,MERFISH/MERSCOPE |
| GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,4,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis |
| GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,3,Mus musculus,Visium,Visium,bone,bone fracture,disease,3,40483363,train |
| GSE297144,The HFE H63D variant in pancreatic cancer promotes epithelial-to-mesenchymal transition at the expense of cell cycle,8,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,8,,train |
| GSE297388,Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice,4,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,disease,4,42067923,train |
| GSE297459,Human bladder cell spatial mapping,1,Homo sapiens,Xenium,Xenium,bladder,,not stated,1,,val |
| GSE297621,Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria,2,Mus musculus,Visium,Visium,lung,infectious disease,disease,2,40730835,train |
| GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],4,Homo sapiens,Other,Nova-ST,brain,,disease,0,41286448,train |
| GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,4,Mus musculus,Visium,Visium,heart,myocarditis,disease,4,,train |
| GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,34,Homo sapiens,Xenium,Xenium,lung,pulmonary hypoplasia |
| GSE297947,IL-33/IL1RL1 (ST2) signalling drives immune suppression in HPV-mediated epithelial hyperplasia,1,Mus musculus,Visium,Visium,skin,,normal,1,42679897,train |
| GSE298021,Spatial Transcriptomics of Developing Wheat Seed Reveals Concentric Gene Expression Zones and Subgenome Biased Expression of Key Genes,3,Triticum aestivum,Stereo-seq,Stereo-seq,plant,,normal,0,40904198;42192524,train |
| GSE298115,Spatial Transcriptomic Analysis of Mouse Parathyroid Gland Cells Expressing an Activating Variant of Gcm2,6,Mus musculus,Visium,Visium,other,,normal;perturbation,2,41025096,test |
| GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,14,Homo sapiens,Visium,Visium,bone;breast,breast neoplasm |
| GSE298314,Microglia-astrocyte crosstalk regulates synapse remodeling via Wnt signaling,4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,perturbation,0,40934914,val |
| GSE298545,Molecular pathology of acute spinal cord injury in middle-aged mice,4,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,4,40653490,test |
| GSE298591,MERFISH analysis of Sst-Cre mediated Dnmt1 knockout at E16.5,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;perturbation,0,40707493,train |
| GSE298650,A dataset of spatially resolved transcriptomics of post-natal cardiac development in mice,5,Mus musculus,Stereo-seq,Stereo-seq,heart,,normal,0,40890142,train |
| GSE298680,A molecular atlas of cellular vulnerability and resilience in the parkinsonian striatum.,24,Mus musculus,Visium,Visium,brain,,normal;disease;perturbation,0,,train |
| GSE298689,Spatially resolved single-cell analysis uncovers protein kinase Cδ-expressing microglia with anti-tumor activity in glioblastoma [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,brain,,perturbation,1,41503214,train |
| GSE298742,Hand1 gene replacement with Hand2 reveals overlap in function with unique occurrence of omphalocele and heart defects [Spatial Transcriptomics],15,Mus musculus,Visium,Visium,embryo (whole),omphalocele,normal;disease,15,,train |
| GSE298774,Spatial gene expression and microenvironmental changes in the transition of nevus to melanoma,9,Homo sapiens,Visium,Visium,skin,melanocytic nevus |
| GSE298872,Breast Cancer Remodels Lymphatics in Sentinel Lymph Nodes,4,Homo sapiens,Visium HD,Visium HD,lymph node,breast cancer,normal;disease,4,41249124,train |
| GSE298921,Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay,2,Mus musculus,Visium,Visium,oral cavity,,normal;disease,2,40697343,test |
| GSE299025,Immunosuppressive tumor microenvironment of osteosarcoma [Spatial transcriptomics],2,Homo sapiens,Visium,Visium,bone,osteosarcoma,disease,2,40647416,train |
| GSE299027,Molecular Characterization of Meningioma,19,Homo sapiens,Visium,Visium,meninges,meningioma,disease,18,,val |
| GSE299051,Immune Dynamics in Palmoplantar Pustulosis Unveiled by Single-Cell and High-Resolution Spatial Transcriptomics [Spatial Transcriptomics],2,Homo sapiens,Visium HD,Visium HD,skin,palmoplantar pustulosis,disease,2,41740929,val |
| GSE299069,Actin Dysregulation Induces Neuroendocrine 1 Plasticity and 2 Immune Evasion: A Vulnerability of Small Cell Lung Cancer,2,Mus musculus,Xenium,Xenium,lung,small cell lung carcinoma,disease,2,41353272,train |
| GSE299165,Profiling the Microenvironment in Tuberous Sclerosis Complex-Associated Angiomyolipoma: Insights from Spatial Gene Expression Analysis,3,Homo sapiens,Visium,Visium,kidney,tuberous sclerosis;kidney cancer;angiomyolipoma,disease,3,41309810,train |
| GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],22,Homo sapiens,Xenium,Xenium,bone marrow,monoclonal gammopathy of uncertain significance;immune system cancer;plasma cell neoplasm;plasma cell myeloma;smoldering plasma cell myeloma,normal;disease,22,40643106,train |
| GSE299207,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics,1,Mus musculus,Xenium,Xenium,bone marrow,,normal,1,40643106,train |
| GSE299256,Positionally distinct interferon-stimulated dermal immune-acting fibroblasts promote neutrophil recruitment in Sweet's syndrome.,1,Homo sapiens,CosMx,CosMx,skin,,disease,0,40516577,train |
| GSE299374,Meningioma cell reprogramming and microenvironment interactions underlie brain invasion,2,Homo sapiens,Visium,Visium,meninges,meningioma,disease,2,41476144,train |
| GSE299386,Comparative transcriptomics reveals differences in cortical cell type organization between metatherian and eutherian mammals [Stereo-seq],2,Monodelphis domestica |
| GSE299434,Combined epigenetic therapy with FACT and BET inhibitors remodels chromatin and disrupts oncogenic transcription in Diffuse Midline Glioma [Xenium],4,Mus musculus,Xenium,Xenium,brain,glioma,disease,4,41533777,train |
| GSE299494,Spatial transcriptomic mapping of canine osteosarcoma reveals immune microenvironment features linked to survival,14,Canis lupus familiaris,Visium,Visium,bone;unknown,canine osteosarcoma |
| GSE299573,Spatial transcriptomics of bladder cancer with squamous differentiation,1,Homo sapiens,Visium HD,Visium HD,bladder,,disease,1,41917522,train |
| GSE299610,Subclinical Neonatal HSV-1 Infection Triggers Immune Responses and Modulates Neurological Pathways Leading to Long-Term Sequelae [Visium],2,Mus musculus,Visium,Visium,brain,infectious disease,disease,2,,train |
| GSE299631,Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumors and breast cancer,37,Mus musculus |
| GSE299660,Spatial transcriptomic profiling of seborrhoeic keratoses,4,Homo sapiens,Visium,Visium,skin,keratosis,disease,4,42413572,train |
| GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,12,Rattus norvegicus,Visium,Visium,heart,acute disease;acute myocardial infarction,disease;normal,12,41292930;41414646,train |
| GSE299776,Virus-Human Chromatin Interactions Reorganise 3D Genome and Hijack KDM5B for Promoting Metastasis in Nasopharyngeal Carcinoma [10X Visum Spatial Transcriptome],1,Homo sapiens,Visium,Visium,head and neck,nasopharyngeal carcinoma,disease,1,40759888,train |
| GSE299786,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [CosMx],4,Homo sapiens,CosMx,CosMx,lung,lung adenocarcinoma |
| GSE299810,Distinct Layer 6b transcriptomic subtypes parcellate the cortical mantle,8,Mus musculus,Xenium,Xenium,brain,,normal,8,41083138,train |
| GSE299816,Differential expression analysis in single cell and spatial RNASeq without model assumptions,1,Mus musculus,Visium HD,Visium HD,bone,,normal,1,,train |
| GSE299886,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [MERFISH],3,Homo sapiens,MERFISH/MERSCOPE,MERFISH,lung |
| GSE299911,Chronic periodontitis induces neurobehavioral deficits via microbiota–glia–endocrine interactions,2,Mus musculus,Visium,Visium,brain,chronic periodontitis,normal;disease,0,,train |
| GSE299970,10X Visium Spatial transcriptomics of pancreatic caner patient tissue.,1,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,1,41722836,train |
| GSE300007,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium],6,Homo sapiens,Xenium,Xenium,lung |
| GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,7,Mus musculus,Visium,Visium,lung,COVID-19,disease,7,,train |
| GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,12,Homo sapiens,Visium,Visium,uterus,,normal,12,41218071,train |
| GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,18,Homo sapiens,Xenium,Xenium,head and neck |
| GSE300289,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E17],1,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,,train |
| GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",19,Mus musculus,Visium,Visium,lung,lung adenocarcinoma |
| GSE300303,Chikungunya virus persists in joint associated macrophages and promotes chronic disease [Xenium],6,Mus musculus,Xenium,Xenium,other,vector-borne disease;chikungunya,normal;disease,6,41922840,train |
| GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,7,Homo sapiens,Visium,Visium,skin,Kaposi's sarcoma,disease,7,41342328,val |
| GSE300434,Migratory astrocyte subset drives CNS regeneration after astrocyte loss,8,Mus musculus,Visium HD,Visium HD,brain,,disease;perturbation,6,42493549,train |
| GSE300445,Spatial tumour-immune ecosystems shape the efficacy of anti-PD1 immunotherapy in primary cutaneous melanoma [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,skin,cutaneous melanoma,disease,4,42315253,train |
| GSE300585,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Heart Failure],1,Homo sapiens,Visium,Visium,heart,heart failure,disease,1,40764306,train |
| GSE300613,Spatial transcriptomics dataset of primary tumours from MDA-MB-231 xenograft model,2,Homo sapiens,Visium,Visium,other,neoplasm,disease,2,40552975,test |
| GSE300645,Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia,4,Homo sapiens,Visium,Visium,brain,cerebral cortical dysplasia,disease,4,40957662,train |
| GSE300676,Identification of key molecules promoting lepidic–filigree micropapillary–conventional/overt micropapillary progression in lung adenocarcinoma: A comprehensive gene expression analysis study using the spatial gene expression solution methodology,8,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma,disease,7,41040912,train |
| GSE300692,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Bladder Cancer],1,Homo sapiens,Visium HD,Visium HD,bladder,cancer,disease,1,40764306,train |
| GSE300851,DGAT: A Dual-Graph Attention Network for Inferring Spatial Protein Landscapes from Transcriptomics,6,Homo sapiens,Visium,Visium,kidney;lung,chronic kidney disease;lung disorder,disease;normal,0,,train |
| GSE300895,High resolution spatial trancrioptomics combined with deep learning-based image segmentation enables single-cell spatial profiling of archival FFPE kidney tissue from patients with idiopathic nephrotic syndrome,3,Homo sapiens,Visium HD,Visium HD,kidney,idiopathic nephrotic syndrome,disease,3,,train |
| GSE301012,Spatial transcriptomic profiling uncovers the molecular effects of the neurotoxicant polychlorinated biphenyls (PCBs) in the brains of adult mice,4,Mus musculus,Visium,Visium,brain,,perturbation,4,41620578,train |
| GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,16,Rattus norvegicus,Visium,Visium,brain,,disease;normal,16,41540500,train |
| GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,8,Homo sapiens,Visium,Visium,small intestine,neuroendocrine neoplasm,disease,8,41779010,train |
| GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,24,Homo sapiens,Xenium,Xenium,skin,acne,normal;disease,23,,train |
| GSE301306,Spatial transcriptomics of the human first trimester decidua,4,Homo sapiens,Visium,Visium,placenta,,normal,4,42248577,train |
| GSE301435,A parabrachial hub for the prioritization of survival behavior during pain,2,Mus musculus,CosMx,CosMx,brain,,perturbation,0,41062698,train |
| GSE301486,Spatial transcriptomics data of EMP2-progressive symmetric erythrokeratoderma,1,Homo sapiens,Visium HD,Visium HD,skin,erythrokeratoderma,disease,1,40758889,val |
| GSE301696,Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions - Microglia cell culture,4,Mus musculus,MERFISH/MERSCOPE,MERFISH,other;brain,,normal;perturbation,0,,train |
| GSE301720,Integrated single-cell and spatial analysis identifies context-dependent myeloid-T cell interactions in head and neck cancer immune checkpoint blockade response,8,Homo sapiens,Visium,Visium,head and neck;airway;oral cavity,malignant tumor of neck,disease,8,41837744,train |
| GSE301973,The spatial transcriptomics of EGFR-mutant non-small cell lung cancer before osimertinib treatment,2,Homo sapiens,Visium HD,Visium HD,lung,non-small cell lung carcinoma,disease,2,41152910,train |
| GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,8,Mus musculus,Xenium,Xenium,oral cavity,neoplasm of neck,disease,8,41053162,test |
| GSE302160,4R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy,4,Homo sapiens,Visium,Visium,brain,"supranuclear palsy, progressive, 1;palsy",disease,4,41476155,val |
| GSE302187,Murine model of MRSA-induced kidney injury (spatial transcriptomics),2,Mus musculus,Visium,Visium,kidney,pyelonephritis,disease,0,,train |
| GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],4,Homo sapiens,Xenium,Xenium,kidney,,normal;perturbation,4,,train |
| GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,3,Homo sapiens,Visium HD;Xenium;Visium,Visium HD;Xenium;Visium,lung,lymphangioleiomyomatosis,disease,3,,test |
| GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,4,Mus musculus,Visium,Visium,brain,,normal;disease,4,40975067,test |
| GSE302470,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium embryo],2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,41817619,train |
| GSE302473,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium tumor],2,Mus musculus,Xenium,Xenium,skin,skin squamous cell carcinoma,disease,2,41817619,train |
| GSE302474,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium CreERT],2,Mus musculus,Xenium,Xenium,skin,skin disorder,perturbation;disease,2,41817619,train |
| GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],12,Homo sapiens,Xenium,Xenium,brain,glioma,disease,12,41125076,train |
| GSE302569,Elucidating the fibrotic niche and cellular dynamics in crohn’s disease-associated fibrostenosis,2,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,2,41344440,train |
| GSE302642,IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation (Related accession no. GSE275791) - Spatial transcriptomics dataset,6,Homo sapiens,Xenium,Xenium,brain,oligodendroglioma;astrocytoma (excluding glioblastoma);astrocytic tumor,disease;normal,0,41505555,train |
| GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis,3,Homo sapiens,Visium,Visium,kidney,anti-neutrophil cytoplasmic antibody-associated vasculitis,normal;disease,3,42602048,train |
| GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,4,Mus musculus,Visium,Visium,liver,,disease,4,41706888,train |
| GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,13,Homo sapiens,Visium,Visium,eye,keratoconus,disease;normal,13,41931003,train |
| GSE303070,A spatial atlas of colorectal cancer reveals the influence of stromal niches on tumour differentiation,352,Homo sapiens,CosMx,CosMx,colon |
| GSE303162,A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,lung,lung cancer,disease,2,42581185,train |
| GSE303530,Inhibition of HIF1 signaling as a therapeutic option for metastatic castration-resistant prostate cancer.,1,Mus musculus,Visium,Visium,prostate,prostate cancer,disease,1,41896221,train |
| GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],5,Homo sapiens,Visium HD,Visium HD,lymph node,lymph node disorder;follicular lymphoma,disease,5,,test |
| GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,4,Mus musculus,Visium HD,Visium HD,small intestine,,perturbation,4,,val |
| GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,12,Cavia porcellus,Visium,Visium,placenta,,disease;normal,12,,test |
| GSE303809,A Single-Cell and Spatial Atlas of Early Human Olfactory Development,5,Homo sapiens,MERFISH/MERSCOPE,MERFISH,other |
| GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,6,Homo sapiens,Visium,Visium,placenta,,normal;disease,6,42597080,train |
| GSE304111,Spatial transcriptomics analysis of mouse liver tissue during Alcohol-associated liver disease development and resolution,1,Mus musculus,CosMx,CosMx,liver,liver disorder,disease,0,,train |
| GSE304124,Mapping Cellular Senescence in Human Dental Follicle and Odontogenic Keratocyst,1,Homo sapiens,Visium,Visium,oral cavity,Keratocystic odontogenic tumor,disease,1,42123694,train |
| GSE304160,Targeting CyclinD1-CDK6 to Mitigate Senescence-Driven Inflammation and Age Associated Functional Decline,4,Mus musculus,CosMx,CosMx,liver,,normal,0,40766702;41509421,train |
| GSE304504,Single-cell and spatial transcriptomic analyses of gene therapy-associated retinal inflammation in non-human primates,4,Macaca mulatta,Visium,Visium,eye,,perturbation;normal,4,42137601,test |
| GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],7,Homo sapiens,Visium,Visium,lung,pulmonary emphysema,normal;disease,7,,train |
| GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,4,Homo sapiens,Visium,Visium,kidney,transplant rejection,normal;disease,4,41030449,val |
| GSE304762,Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics,2,Mus musculus,Xenium,Xenium,esophagus |
| GSE304811,RHOAY42C-driven cell lineage plasticity and immune remodeling of diffuse gastric cancer,2,Mus musculus,Xenium,Xenium,other,diffuse gastric cancer,disease,2,,train |
| GSE304962,Multi-omics analyses reveal DjTcf4 critical for proper timing of differentiation in planarian regeneration,4,Dugesia japonica,Visium,Visium,other,,perturbation,4,,train |
| GSE305111,Rete ridges form via evolutionarily distinct mechanisms in mammalian skin,3,Sus scrofa,Stereo-seq,Stereo-seq,skin,,normal,0,41639458,train |
| GSE305116,Spatial transcriptomics reveals distinct immune microenvironment characteristics between intestinal-type gastric cancer and paired normal gastric mucosa.,2,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,0,41734377,val |
| GSE305314,Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model,4,Rattus norvegicus,Visium,Visium,brain,Alzheimer disease,disease;normal,4,41249845,train |
| GSE305393,Microbial signals in primary and metastatic brain tumors [CosMx],2,Homo sapiens,CosMx,CosMx,brain,brain neoplasm |
| GSE305629,Neutrophils and CD8+ T cells in Muscle-invasive Bladder Cancer (MIBC),2,Homo sapiens,Xenium,Xenium,bladder,cancer,disease,2,42009646,train |
| GSE305911,Engineered thoracic spinal cord organoids for transplantation after spinal cord injury,2,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,2,41136603,train |
| GSE305978,Thyroid Hormone Promotes Fetal Neurogenesis [CosMx],1,Homo sapiens,CosMx,CosMx,brain,,perturbation,0,40906530,train |
| GSE306019,Genetic deletion of Usp22 in KRASG12D-p53-null driven mouse lung cancer [Visium],2,Mus musculus,Visium,Visium,lung,lung cancer,disease,2,42707650,train |
| GSE306111,Spatial transcriptomics of human FALD and normal livers,5,Homo sapiens,CosMx,CosMx,liver,liver disorder,normal;disease,0,41758081,test |
| GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],14,Homo sapiens,Xenium,Xenium,skin,skin carcinoma |
| GSE306150,Spatial gene expression profiling of aortitis samples.,10,Homo sapiens,Xenium,Xenium,blood vessel,aortitis |
| GSE306288,Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification,8,Homo sapiens,Visium,Visium,blood vessel |
| GSE306327,Scar-associated endothelial-stellate cellular crosstalk drives fibrosis resolution in MASH [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,disease,2,,test |
| GSE306374,Genetic profiles of small intestinal and colonic metaplastic Paneth cells by spatial transcriptomics,2,Homo sapiens,Visium HD,Visium HD,small intestine,ulcerative colitis,disease,2,41904124,test |
| GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,7,Homo sapiens,Visium,Visium,brain,childhood medulloblastoma,disease,7,42449993,train |
| GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,9,Mus musculus |
| GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",11,Homo sapiens,Visium,Visium,pancreas,pancreatic adenosquamous carcinoma,disease,11,,val |
| GSE306678,SPP1+ Macrophages Contribute to Hair Growth in Contact Hypersensitivity,1,Mus musculus,Visium HD,Visium HD,skin,hypersensitivity reaction disease,disease,1,,train |
| GSE306706,Spatial transcriptomics and N-glycoproteomics reveal breed-dependent immune and structural responses in Mycoplasma hyopneumoniae-infected pig lungs,4,Sus scrofa,Visium,Visium,lung,infectious disease,normal;disease,4,,train |
| GSE306833,10X VisiumHD Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD).,2,Mus musculus,Visium HD,Visium HD,small intestine,,normal;perturbation,2,41616823,train |
| GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,13,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,normal;disease,13,42228574,train |
| GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,2,Homo sapiens,Xenium,Xenium,small intestine,Crohn disease,disease,2,,val |
| GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],6,Mus musculus,Xenium,Xenium,eye,,normal;perturbation,6,,train |
| GSE307128,Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions [II],4,Mus musculus,Visium HD,Visium HD,lung,,disease,4,42418498,train |
| GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease,8,Homo sapiens,Visium HD,Visium HD,small intestine |
| GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],24,Homo sapiens,Xenium,Xenium,brain,schizophrenia,disease,24,,train |
| GSE307496,Dissecting the development of bovine testicular tissue using spatial transcriptomics,2,Bos taurus,Stereo-seq,Stereo-seq,testis,,normal,0,41639718,train |
| GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars uncovers neuro-fibroblast crosstalk mechanisms across scar types,2,Homo sapiens,Visium,Visium,skin,keloid,disease,2,,train |
| GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",56,Homo sapiens,Visium,Visium,lung,glandular cell neoplasm |
| GSE307586,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens [Spatial Transcriptomics],38,Homo sapiens,Visium,Visium,brain,,normal,38,40964296;42385698,train |
| GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,25,Homo sapiens,Xenium,Xenium,kidney,,perturbation |
| GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],3,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,3,,test |
| GSE307719,Cellular and molecular signatures of the vascular microenvironment define the pre-metastatic brain and meninges [MERFISH],8,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain;meninges,neoplasm,normal;disease,0,,train |
| GSE307744,Human bladder Visium spatial gene expression,1,Homo sapiens,Visium,Visium,bladder,,not stated,1,,train |
| GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,12,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus |
| GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,43,Homo sapiens,Visium,Visium,brain,,normal;not stated,43,41278831,train |
| GSE307895,Genital herpes shedding episodes associate with alterations in the spatial organization and activation of mucosal immune cells,13,Homo sapiens,Xenium,Xenium,other,bacterial vaginosis |
| GSE307951,Ribosomal heterogeneity revealed by a spatial transcriptomics in the water fern Ceratopteris richardii,1,Ceratopteris richardii,BMK S1000,BMKMANU S1000/S3000,plant,,normal,0,41635689,train |
| GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],31,Homo sapiens,Visium,Visium,brain,Alzheimer disease,normal;disease,31,41332786,train |
| GSE308146,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - CosMx Data,4,Homo sapiens,CosMx,CosMx,unknown |
| GSE308147,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - MERSCOPE Data,2,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,breast;lung,cancer,disease;normal,0,41266321,train |
| GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,8,Homo sapiens,Xenium,Xenium,breast;lung;unknown,cancer,disease;normal,7,41266321,train |
| GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,3,Homo sapiens,DBiT-seq,DBiT-seq,lymph node,B-cell chronic lymphocytic leukemia |
| GSE308260,Spatial transcriptomics for intrathoracic adhesion in mice,1,Mus musculus,Visium,Visium,lung,,perturbation,1,42230567,train |
| GSE308275,Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency,2,Homo sapiens,Visium,Visium,ovary,,normal,2,42226209,train |
| GSE308486,Novel biomarker for prostatic ductal adenocarcinoma identified using spatial transcriptomic analysis,6,Homo sapiens,Visium,Visium,prostate,adenocarcinoma,disease,6,,train |
| GSE308507,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing (Stereoseq),5,Mus musculus,Stereo-seq,Stereo-seq,colon |
| GSE308623,Spatial dynamics of brain development and neuroinflammation,28,Mus musculus,ST (legacy),ST (legacy),brain,,normal;perturbation;disease,0,41193846,train |
| GSE308624,Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer,71,Homo sapiens,CosMx,CosMx,stomach,gastric cancer,disease,0,41194113,train |
| GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,4,Homo sapiens,Xenium,Xenium,skin,,disease,4,,train |
| GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],5,Homo sapiens,Xenium,Xenium,lung |
| GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,2,Homo sapiens,Visium HD,Visium HD,skin,,normal,2,,train |
| GSE308952,Peripheral glia constitute a pro-reparative niche triggering skin wound healing [Spatial Transcriptomics],1,Mus musculus,Stereo-seq,Stereo-seq,skin,,perturbation,0,41512873,train |
| GSE308959,The origin of hepatocellular carcinoma is regulated by metabolic zonation [Xenium],3,Mus musculus,Xenium,Xenium,liver,hepatocellular carcinoma,disease;normal,3,41196951,train |
| GSE309269,Transcriptional programs dictating tumor cell fate decisions in neuroblastoma lymph node metastasis [spatial transcriptomics],2,Homo sapiens,Visium,Visium,adrenal gland |
| GSE309408,Comparative Eye Transcriptome Atlas,8,Anolis carolinensis |
| GSE309522,Eosinophils enhance granuloma-mediated control of persistent Salmonella infection,16,Mus musculus,Xenium,Xenium,lymph node,salmonellosis,normal;disease,0,41272146,train |
| GSE309565,Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types,2,Mus musculus,Visium HD,Visium HD,head and neck,,normal;perturbation,2,,test |
| GSE309857,Microglial TDP-43 mediates myelin refinement and represses Tyrobp cryptic exon inclusion in mice [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,brain,,perturbation;normal,0,42420559,train |
| GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,6,Rattus norvegicus,Visium,Visium,skeletal muscle,,perturbation,6,41796221,train |
| GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,4,Mus musculus,Slide-seq,Curio Trekker,lung,,perturbation |
| GSE310129,Spatial transcriptome sequencing of chicken and duck beaks,3,Anas platyrhynchos |
| GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],22,Homo sapiens,Xenium,Xenium,lung,pulmonary emphysema,normal;disease,22,,train |
| GSE310351,Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation,6,Homo sapiens,Visium,Visium,blood vessel,,disease,6,41569144,train |
| GSE310352,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Nanostring CosMx],8,Homo sapiens,CosMx,CosMx,pancreas,pancreatic ductal adenocarcinoma,disease,0,41533516,train |
| GSE310386,Oral bacterial dysbiosis drives autoimmune heart disease via molecular mimicry,8,Homo sapiens,Xenium,Xenium,heart,heart disorder;cardiovascular disorder,disease;not stated,1,,train |
| GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],12,Mus musculus,Xenium,Xenium,liver,cancer,normal;disease,12,41576948,train |
| GSE310443,Single-cell Spatial Transcriptomics Reveals Hepatocyte Metabolic Reprogramming in Fontan Associated Liver Disease,2,Homo sapiens,CosMx,CosMx,liver,Fontan-associated liver disease,normal;disease,0,41734025,train |
| GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,16,Mus musculus,Xenium,Xenium,embryo (whole) |
| GSE310610,Spatial Transcriptomics of Human Fetal Lungs,12,Homo sapiens,Visium,Visium,lung,trisomy 21,normal;disease,12,41484334,train |
| GSE310658,Xenium In Situ analysis of mouse skin mock-treated or treated with SspA and HDM,2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,,train |
| GSE310797,Single cell and Spatial RNA-seq in Oral Squamous Cell Carcinoma with Different Stage,3,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,0,41851114,train |
| GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,8,Mus musculus |
| GSE311123,Spatial analysis revealed localization of osteblastogenesis-inhibitory factors in Giant Cell Tumor of Bone,1,Homo sapiens,Visium,Visium,bone,bone giant cell tumor |
| GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,7,Mus musculus |
| GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,5,Homo sapiens,Visium,Visium,colon,colorectal cancer,disease,5,,train |
| GSE311369,A Complete Spatial Map of Mouse Retinal Ganglion Cells Reveals Density and Gene Expression Specializations [RGC_CrossSection],1,Mus musculus,Xenium,Xenium,eye,,normal,1,41452983,train |
| GSE311383,High-resolution spatial transcriptomics of human liver with VisiumHD,3,Homo sapiens,Visium HD,Visium HD,liver,,normal,3,42342734,train |
| GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,41,Homo sapiens,Xenium,Xenium,lung |
| GSE311636,New taxonomy based on individual patient-reported response trajectories defines ulcerative colitis endotypes and reveals vascular inflammation as a mechanism for vedolizumab nonresponse [cosMx],2,Homo sapiens,CosMx,CosMx,rectum,ulcerative colitis,disease,0,,val |
| GSE311681,An immunobiliary single-cell atlas resolves crosstalk between type 2 conventional dendritic cells and γδ T cells in cholangitis,1,Mus musculus,Xenium,Xenium,liver,cholangitis,disease,1,41963321,train |
| GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,15,Macaca fascicularis,Visium,Visium,kidney,,disease;perturbation,15,,train |
| GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",10,Rattus norvegicus,DBiT-seq,DBiT-seq,brain,,normal;disease,0,42020752,train |
| GSE311783,DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics],7,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,7,41707654,train |
| GSE311892,The local cellular response to Human Papillomavirus focuses on basal layer restoration as visualized in situ by specific cellular neighborhoods near infected cells,36,Homo sapiens,CosMx,CosMx,other,,disease;normal;not stated,0,41438752,train |
| GSE311909,A targetable developmental program co-regulates angiogenesis and immune evasion [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,skin,melanoma,disease,2,41631877,val |
| GSE312053,Bridge to transplant using a flow-adaptive extracorporeal total artificial lung system following bilateral pneumonectomy,9,Homo sapiens,Visium HD,Visium HD,lung,acute respiratory distress syndrome,perturbation |
| GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",10,Homo sapiens,Visium,Visium,skin,systemic sclerosis,disease,10,41411065,train |
| GSE312168,Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies,1,Rattus norvegicus,Visium,Visium,lung,,perturbation,1,41501078,train |
| GSE312204,Clonal biases dictate availability of colonic cancer driver mutations for transformation,20,Homo sapiens,Visium,Visium,colon,,normal,20,41991531,test |
| GSE312281,MicroRNA-200 family inhibits sebaceous gland fate specification by disrupting SOX9 function [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,skin,,perturbation,1,,train |
| GSE312327,Spatially-guided metabolomics profiling of heterogeneous human tumor tissues,2,Homo sapiens,Visium,Visium,liver,neoplasm,disease,2,41922830,train |
| GSE312358,Multi-omics Analysis of Immune Cells Induced by Artificial Adjuvant Vector Cell (aAVC) Therapy in HPV-Positive Tumor-Bearing Mice [Spatial Transcriptomics],2,Mus musculus,Xenium,Xenium,other,neoplasm,disease,2,42545372,train |
| GSE312415,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [CosMx],60,Homo sapiens,CosMx,CosMx,small intestine |
| GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],32,Homo sapiens,Xenium,Xenium,small intestine |
| GSE312493,early neurogenic inflammation requires stepwise DC aggregation for optimal induction of immune response,18,Mus musculus,Xenium,Xenium,skin,,perturbation |
| GSE312698,NanoString CosMx SMI (human) on ten human MASLD samples,4,Homo sapiens,CosMx,CosMx,liver,metabolic dysfunction-associated steatotic liver disease,disease,0,42151416,train |
| GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,16,Mus musculus,Visium,Visium,spinal cord,,perturbation |
| GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",10,Homo sapiens,Xenium,Xenium,skin,systemic sclerosis,disease,10,41411065,train |
| GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],4,Homo sapiens,Xenium,Xenium,lung,chronic obstructive pulmonary disease,disease,4,41578022;42395348,train |
| GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,4,Mus musculus,Xenium,Xenium,lung,lung neoplasm |
| GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",23,Ambystoma mexicanum,Xenium,Xenium,skeletal muscle |
| GSE313353,Intestinal BMP SMADs impart the mid-villus pattern via direct targeting of villus zonation genes and by controlling a transcription factor hierarchy [Spatial Transcriptomics],1,Mus musculus,Visium HD,Visium HD,small intestine,,perturbation,1,,train |
| GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,34,Mus musculus,Visium,Visium,brain,,disease;perturbation;normal,34,41250842,train |
| GSE313471,Identification of a long-term surviving human mesenchymal stromal cell subpopulation upon intradermal injection in immunodeficient mice,7,Homo sapiens,Visium,Visium,bone marrow,,normal,7,42365332,train |
| GSE313530,Spatial transcriptomics dataset of non-human primates,20,Macaca fascicularis |
| GSE313636,Spatial transcriptomic analysis of Naive or Yersinia pseudotuberculosis infected ileum reveals novel enterocyte transcriptional state,4,Mus musculus,Xenium,Xenium,small intestine,Yersinia pseudotuberculosis infectious disease,normal;disease,4,,test |
| GSE313662,Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial,6,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,6,41620440,train |
| GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,42,Homo sapiens,Visium,Visium,meninges,meningioma,disease,42,41663806,train |
| GSE313700,Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [CosMx_Stat1KO],50,Mus musculus,CosMx,CosMx,liver,,perturbation,50,,train |
| GSE313704,Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH],10,Mus musculus,MERFISH/MERSCOPE,MERFISH,liver,liver cancer,normal;disease;perturbation,0,,train |
| GSE313808,"High resolution mapping of human skin chronic wound tissues biofilm infected using integrated single-cell, spatial and in situ analysis [Xenium]",2,Homo sapiens,Xenium,Xenium,skin,,disease,2,,val |
| GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,3,Mus musculus,Visium,Visium,skin,melanoma,disease,3,,train |
| GSE313858,Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma,3,Homo sapiens,Visium HD,Visium HD,other |
| GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],246,Homo sapiens,Visium,Visium,brain,amyotrophic lateral sclerosis,normal;disease,246,42551425,test |
| GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,4,Homo sapiens,Xenium,Xenium,skin,infectious disease,disease;normal,4,,train |
| GSE314035,Protective efficacy of AAV-expressed bNAbs co-delivered with PD-L1,2,Macaca mulatta,Visium HD,Visium HD,skeletal muscle,,perturbation,2,42282848,train |
| GSE314260,Single-cell and spatial transcriptomics of A-P and D-V patterned human trunk embryoid model (hTEM),4,Homo sapiens,Visium HD,Visium HD,other,,normal,0,,train |
| GSE314325,Inflammatory Monocytes Constrain YAP-Induced Cell Proliferation [MERFISH],7,Mus musculus,MERFISH/MERSCOPE,MERFISH,liver,,normal;perturbation,0,42341114,test |
| GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,9,Mus musculus,Xenium,Xenium,other,,perturbation,9,,train |
| GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],16,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,16,41610194,train |
| GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,12,Homo sapiens,Visium,Visium,heart,cardiac sarcoidosis,disease,12,,train |
| GSE315151,A Spatiotemporal Cell Atlas of the Developing Rat Tooth Germ Reveals Iron-Deficiency Induced Ameloblast Dysregulation,2,Rattus norvegicus,Stereo-seq,Stereo-seq,oral cavity,iron deficiency anemia |
| GSE315233,A Single-Cell Bioprinting Approach with Subcellular Resolution to Reconstruct Native Cellular Microenvironments and Interrogate Spatial Biology,2,Homo sapiens,Visium HD,Visium HD,other,,normal,2,42281981,train |
| GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,33,Mus musculus,Xenium,Xenium,pancreas,neoplasm |
| GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],17,Homo sapiens,Xenium,Xenium,blood vessel,atherosclerosis,disease,17,41610194,train |
| GSE315295,Distinct nociceptor roles in inflammation and itch revealed by subset-specific transcriptomic adaptation,18,Mus musculus,Xenium,Xenium,skin,,normal;perturbation;disease,18,41990747,train |
| GSE315408,Spatial and single-nucleus multi-omics profiling reveals heterogeneous endothelial cell overabundance in endocardial fibroelastosis [MERFISH],5,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,heart,endocardial fibroelastosis,disease;normal,0,,train |
| GSE315411,Fishing with Two Lines: A Hybrid Approach to Spatial Transcriptomic Discovery,5,Homo sapiens,Xenium,Xenium,lung,,not stated,5,41542551 |
| GSE315416,A High-Resolution Stereo-seq Spatial Transcriptomic Dataset of the Bovine Liver,2,Bos taurus,Stereo-seq,Stereo-seq,liver,,normal,0,42737743,train |
| GSE315435,Rhythmic nephron formation in the developing kidney,11,Mus musculus |
| GSE315482,Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Reveals Neutrophil-Kupffer Cell Crosstalk via Thrombospondin-1/CD36 after Surgical Stress,4,Mus musculus,Visium,Visium,liver,ischemia reperfusion injury,perturbation |
| GSE315487,CD73 inhibition overcomes adaptive immune resistance to PARP inhibition in models of prostate cancer,4,Mus musculus,Visium,Visium,prostate |
| GSE315553,Spatial Transcriptomics Data from Human Choroid Plexus,4,Homo sapiens,Slide-seq,Slide-seq,brain,,normal;not stated,0,41648589,val |
| GSE315907,p53 maintains healthy aging,196,Mus musculus,CosMx,CosMx,liver,,perturbation |
| GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],2,Mus musculus,Xenium,Xenium,skin,mesenchymal cell neoplasm,disease,2,,train |
| GSE316387,Xenium Analysis of Melanoma FFPE,15,Homo sapiens,Xenium,Xenium,skin,melanoma |
| GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,4,Homo sapiens,Visium,Visium,blood vessel,,disease,4,,train |
| GSE316618,Clonal memory of colitis accumulates and promotes tumor growth [Visium],2,Mus musculus,Visium HD,Visium HD,colon,colon adenoma |
| GSE316662,Spatial Transcriptomic Mapping of Postnatal Mouse Uterine Development,8,Mus musculus,Xenium,Xenium,uterus,,normal,8,42406946,train |
| GSE316760,Spatial transcriptomics of primary cutaneous melanoma,2,Homo sapiens,Visium,Visium,skin,cutaneous melanoma,disease,2,,val |
| GSE316789,A long-read-compatible spatial barcoding system: enables isoform-resolved spatial heterogeneity at near-single-cell scale.,4,Solanum lycopersicum |
| GSE316800,Stretching inhibits tumor growth in MMTV-PYMT via a direct mechanical effect,1,Mus musculus,Xenium,Xenium,breast,neoplasm,disease,1,,train |
| GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,9,Homo sapiens,Xenium,Xenium,brain,IDH-wildtype glioblastoma |
| GSE317062,"Single-nucleus and Spatial Transcriptomics Reveal Intestinal Cellular Heterogeneity, Differentiation, and Cell Communication Mechanisms in SAP-induced Intestinal Injury [Spatial Transcriptomics]",4,Rattus norvegicus,Stereo-seq,Stereo-seq,small intestine,,normal;disease,0,41694378,train |
| GSE317119,A generative AI-designed vascular liner prevents restenosis,2,Oryctolagus cuniculus,Stereo-seq,Stereo-seq,blood vessel,,perturbation,0,,train |
| GSE317226,HIF regulatory network reflects kidney disease progression in diabetes and reversal with SGLT2 inhibition,4,Homo sapiens,Visium HD,Visium HD,kidney,kidney disorder;type 2 diabetes mellitus,disease,4,42009641,val |
| GSE317297,Multicellular origins of ovarian inflammaging [Spatial Transcriptomics],2,Mus musculus,Slide-seq,Slide-seq,ovary,,normal,0,,train |
| GSE317379,spaTransfer: transfer learning for single-cell and spatial transcriptomics data using non-negative matrix factorization,2,Homo sapiens,Xenium,Xenium,brain,,normal,2,,val |
| GSE317381,spaTransfer: transfer learning for single-cell and spatial transcriptomics data using non-negative matrix factorization [DG],4,Homo sapiens,Xenium,Xenium,brain,,normal,4,,train |
| GSE317606,A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer,12,Homo sapiens,Visium,Visium,other |
| GSE317755,A spatial transcriptomics comparison of the adult versus metamorphosed axolotl brain,6,Ambystoma mexicanum,Stereo-seq,Stereo-seq,brain,,normal,0,,test |
| GSE317987,Spatial mapping of Ethiopian cutaneous leishmaniasis lesions reveals patient-defined immune signatures,10,Homo sapiens,Visium,Visium,skin,cutaneous leishmaniasis,normal;disease,10,42553130,train |
| GSE318039,Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD,8,Homo sapiens,Visium,Visium,lung,chronic obstructive pulmonary disease,normal;disease,8,42351239,train |
| GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",10,Mus musculus,Xenium,Xenium,brain,,normal,10,42314674,train |
| GSE318238,Spatially resolved gene expression and tumour-microenvironment interactions across malignant transformation in IDH-mutant glioma,3,Homo sapiens,Visium,Visium,brain,astrocytoma (excluding glioblastoma),disease,3,,train |
| GSE318415,Transcriptomic Landscape of Microglia in Mouse Models of Social Dysfunction and Oxytocin-Mediated Recovery,3,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,3,,test |
| GSE318507,Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics,4,Mus musculus,Xenium,Xenium,brain,neuromuscular disease,normal;disease;not stated,4,42542656,train |
| GSE318532,Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis,2,Mus musculus,Visium,Visium,lung,neoplasm,normal;disease,2,41778850,train |
| GSE318562,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics],22,Homo sapiens,Visium,Visium,brain,IDH-wildtype glioblastoma |
| GSE318590,Spatial transcriptomics data of the wild-type and App NL-G-F mouse posterior cortex,8,Mus musculus,CosMx,CosMx,brain,Alzheimer disease,normal;disease,8,41794826,train |
| GSE318726,Phenylalanine Reprograms TLS Maturation and Plasma cell differentiation in MASH-HCC [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis |
| GSE318797,CosMX spatial transcriptomics of mouse subcutaneous EO771 tumors to study synergistic effects of NEDD8 depletion and anti-PD-1 therapy,2,Mus musculus,CosMx,CosMx,other,neoplasm,disease,0,42330494,train |
| GSE318867,Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome],3,Homo sapiens,Visium,Visium,lung,small cell lung carcinoma,disease,3,41791380,train |
| GSE319123,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT,1,Mus musculus,Xenium,Xenium,lung,,perturbation,1,,train |
| GSE319236,Spatially resolved maternal and fetal cell contributions to severe Preeclampsia,64,Homo sapiens,Visium,Visium,uterus |
| GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],7,Mus musculus,DBiT-seq,DBiT-seq,lung |
| GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities and Immune Architecture,22,Homo sapiens,Visium,Visium,bladder,urinary bladder carcinoma,disease,22,,train |
| GSE319617,Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir,2,Homo sapiens,Visium HD,Visium HD,liver,,normal,2,42086556,train |
| GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],9,Mus musculus,Xenium,Xenium,skin |
| GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),3,Homo sapiens,Xenium,Xenium,lung,lung adenocarcinoma |
| GSE319763,Inflammatory immune modulators of AML lung infiltration and respiratory failure,3,Homo sapiens,Xenium,Xenium,lung,acute myeloid leukemia |
| GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],18,Homo sapiens,Xenium,Xenium,heart,cardiac sarcoidosis,disease,18,42206386,train |
| GSE319842,Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts,2,Mus musculus,Visium,Visium,heart,,perturbation,2,42102394,train |
| GSE319949,Logistic regression for estimating functional effects with spatial transcriptomics,4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal,0,42137981,train |
| GSE320041,High-resolution and noninvasive profiling of the tumor microenvironment with spatial ecotypes [Visium],17,Homo sapiens,Visium |
| GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,4,Homo sapiens,Xenium,Xenium,lung |
| GSE320372,Spatial transcriptomics analysis of dual-pathway spots,5,Mus musculus,Visium,Visium,liver,fish eye disease,normal;perturbation;disease,5,41890086,train |
| GSE320403,The role of retinoic acid receptor signaling in liver cells during Alcohol-associated liver disease resolution by spatial transcriptomics analysis,1,Mus musculus,Xenium,Xenium,liver,liver disorder,disease,1,,train |
| GSE320442,Blocking the Gut–Liver IgA Axis Attenuates Macrophage-Mediated Inflammation and Injury in Alcohol-Associated Liver Disease [Spatial Transcriptomics],15,Mus musculus,Visium,Visium,small intestine |
| GSE320484,Genetic and pharmacologic disruption of N-Myc suppresses basal cell carcinoma,4,Mus musculus,Xenium,Xenium,skin,basal cell carcinoma |
| GSE320505,Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment,4,Homo sapiens,Visium,Visium,brain,cancer,disease,4,41917370,test |
| GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,5,Homo sapiens,Visium,Visium,head and neck |
| GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,7,Homo sapiens,Visium,Visium,colon |
| GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,10,Homo sapiens,Visium HD,Visium HD,unknown,Ewing sarcoma,disease,10,41991689,train |
| GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,4,Homo sapiens,Visium,Visium,oral cavity,pulpitis,normal;disease,4,,train |
| GSE322974,Spatial Transcriptomic Analysis of a Human Bone Marrow Clot Biopsy Using Xenium 5K,1,Homo sapiens,Xenium,Xenium,bone marrow,,normal,1,41889971;42605801,train |
| GSE323357,Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment,4,Mus musculus,Visium,Visium,bone,,disease,4,42108258,test |
| GSE324075,Integrated spatial transcriptomics (Stereo-seq) and bulk RNA-seq of cardiac sonogenetics in rodent heart tissue across time points [Stereo-seq],1,Mus musculus,Stereo-seq,Stereo-seq,heart,,perturbation,0,,val |
| GSE324128,Molecularly distinct subtypes of Lhx6-positive neurons of the zona incerta differentially regulate sleep pressure and recovery sleep,1,Mus musculus,Xenium,Xenium,brain,,normal,1,,train |
| GSE324158,Single-cell multi-omic and spatial landscape of primate pineal gland reveals circadian and melatonin regulatory architecture,1,Macaca fascicularis,BMK S1000,BMKMANU S3000,brain,,normal,0,,train |
| GSE324268,Xenium single cell spatial transcriptomics from patient-derived glioblastoma organoid cultured on brain slice and a primary glioblastoma sample,2,Homo sapiens,Xenium,Xenium,brain,glioblastoma,disease,2,41951573,train |
| GSE324427,Myasthenia thymus reprograms class switched B cells into BAFF dependent survivors,2,Homo sapiens,Visium HD,Visium HD,thymus,,normal;disease,0,42585334,val |
| GSE324535,CD36-mediated lipid-accumulation in reactive microglia drives retinal degeneration through NLRP3-IL-1β pathway,1,Mus musculus,Stereo-seq,Stereo-seq,eye,retinal degeneration,disease,0,,train |
| GSE324601,Spatial transcriptomic analysis of human iPSC-derived hemanoids at day 16 and day 28,2,Homo sapiens,Visium,Visium,other,,normal,2,,train |
| GSE324903,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E12],1,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,,train |
| GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,9,Homo sapiens,Xenium,Xenium,airway |
| GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,12,Homo sapiens,Visium,Visium,brain,melanoma;sarcoma;non-small cell lung carcinoma,disease,12,,test |
| GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,8,Mus musculus,Xenium,Xenium,lung,,normal;disease,8,42090478,train |
| GSE325371,SlCAX3 drives the formation of crystal idioblasts for tomato ion compartmentalization under salt stress,4,Solanum lycopersicum,BMK S1000,BMKMANU S1000,plant,,perturbation,0,,train |
| GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,4,Homo sapiens,Xenium,Xenium,brain,,normal,4,42385698,train |
| GSE325554,Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,brain,,normal;perturbation,8,37243381,train |
| GSE325587,Spatial transcriptomics identifies IL-32 as a lipid droplet-associated cytokine linked to tubular injury in human diabetic kidney disease,8,Homo sapiens,CosMx,CosMx,kidney,diabetic kidney disease;diabetes mellitus |
| GSE325706,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial [ASPS-02_VisiumHD],2,Homo sapiens,Visium HD,Visium HD,lung,,disease,2,,train |
| GSE325755,Spatial membrane lipid remodeling encodes epithelial lineage and state in human colon cancer,11,Homo sapiens,Visium,Visium,colon |
| GSE325769,Multiomics immune profiling of a patient-relevant orthotopic lung cancer model using SEPARATE-Seq [MERSCOPE],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,lung,lung cancer,disease,0,42026061,train |
| GSE325797,Circuit Organization and Transcriptomic Heterogeneity of Sympathetic Circuits Innervating Cranial Structures [MERFISH],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,other,,normal,0,,train |
| GSE325817,Stroke drives glioma progression through remodeling of the tumor microenvironment [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,brain,stroke disorder;glioma,disease,1,,train |
| GSE325846,Spatial transcriptomic analysis of rat gut tissue reveals transcriptional changes associated with high-fat diet and tirzepatide treatment,4,Rattus norvegicus,Visium,Visium,small intestine,,normal;perturbation,0,,train |
| GSE325861,Macrophage signaling associates with fibrogenic program activation in periductal fibroblasts in pediatric primary sclerosing cholangitis.,2,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,liver,primary sclerosing cholangitis |
| GSE325911,Type-I Interferon drives T-cell responses to amyloid-beta in the central nervous system,37,Mus musculus |
| GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],4,Homo sapiens,Xenium,Xenium,brain,,disease,4,,train |
| GSE325991,High-resolution spatial transcriptomics of human adrenal neoplasms,1,Homo sapiens,Visium HD,Visium HD,adrenal gland,adrenal gland neoplasm,disease,0,,train |
| GSE325996,Interleukin-34 induced Arg1+ macrophages play a key role in breast cancer brain metastasis,2,Mus musculus,Visium,Visium,brain,cerebellar neoplasm |
| GSE326094,Aberrant laminin signaling drives melanocyte dedifferentiation and unveils a tractable therapeutic target in vitiligo,1,Homo sapiens,Visium HD,Visium HD,skin,vitiligo,disease,1,41997929,train |
| GSE326204,Wnt-dependent ontogeny of acellular cementum-forming cementoblasts on the tooth root surface,1,Mus musculus,Visium HD,Visium HD,oral cavity,,normal,1,42129164,test |
| GSE326226,A Xenium Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities,5,Homo sapiens,Xenium,Xenium,bladder,cancer,disease,5,,train |
| GSE326496,Integrative single cell RNA and spatial profiling identify mechanisms of neonatal brain hemorrhage pathophysiology and repair [Xenium],2,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,0,41353666,train |
| GSE326553,"Spatial transcriptomics reveals distinct cell type dynamics following opioid dependence in female mice with the common human mu-opioid receptor variant, Oprm1 A118G",4,Mus musculus,CosMx,CosMx,brain,opiate dependence |
| GSE326636,Spatial transcriptomic analysis of mouse liver in a high-fat diet model with kimchi supplementation,4,Mus musculus,Visium,Visium,liver,,perturbation |
| GSE326639,"Ubiquitin-like proteins NEDD8 and SUMO2 control epithelial homeostasis, regeneration, and inflammation [Xenium]",10,Mus musculus,Xenium,Xenium,skin,,perturbation,10,42348677,train |
| GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],6,Homo sapiens,Xenium,Xenium,skin |
| GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",7,Homo sapiens,Xenium,Xenium,spleen,,normal,7,,train |
| GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,9,Homo sapiens,Xenium,Xenium,other,juvenile idiopathic arthritis,disease,9,41269758,train |
| GSE326903,Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,brain,,normal,3,42624107,test |
| GSE326904,Cardiac tertiary immune niches drive immune activation in immune checkpoint inhibitor myocarditis [CosMx],2,Mus musculus,CosMx,CosMx,heart,myocarditis,disease,0,42647623,train |
| GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,4,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease;normal,4,42100437,test |
| GSE327095,C1q and immunoglobulins mediate activity-dependent synapse loss in the adult brain.,2,Mus musculus,Visium,Visium,brain,,normal,0,42424464,train |
| GSE327129,Subcellular mRNA localization patterns across tissues resolved with spatial transcriptomics,2,Mus musculus,Visium HD,Visium HD,liver,,normal,2,42009650,train |
| GSE327147,MERFISH data on seven mouse brain with Abeta pathology,7,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,amyloidosis;Alzheimer disease,disease,0,,val |
| GSE327192,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer [MERFISH],15,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,liver |
| GSE327284,"Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Spatial data)",2,Mus musculus,Visium HD,Visium HD,brain,traumatic brain injury |
| GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,7,Homo sapiens,Xenium,Xenium,lung |
| GSE327406,"Spatially resolved, integrated single-cell multiomic profiling of the transcriptome and epigenomic targets in frozen tissue sections",1,Mus musculus,Slide-seq,Curio Trekker,brain,,normal,0,42371963,train |
| GSE327441,Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,brain,,normal,4,41935248,train |
| GSE327581,Single-cell spatial transcriptomic profiling of 3xTg-AD mouse brains following fecal microbiota transplantation from stroke and healthy human donors,5,Mus musculus,CosMx,CosMx,brain,cerebrovascular disorder;Alzheimer disease;stroke disorder,disease,0,,train |
| GSE327709,Transient cell states encode positional information to direct asymmetric growth [MERFISH],9,Arabidopsis thaliana,MERFISH/MERSCOPE,MERSCOPE,plant,,perturbation,0,42239415,train |
| GSE327796,Spatial transcriptomic landscape of the Ciona adult brain: functional zonalisation and cellular composition in a sessile chordate brain and a novel insight into neural gland function,4,Ciona robusta,Visium,Visium,brain,,normal,4,42698976,train |
| GSE327879,Single-cell spatial transcriptomic analyses of severe Covid-19 lungs identifies disease-associated spatial niches,2,Homo sapiens,CosMx,CosMx,lung,COVID-19,normal;disease,0,,train |
| GSE327901,A 3D Amphioxus Brain Atlas Illuminates the Blueprint of the Ancestral Chordate Brain and Highlights Unique Vertebrate Innovations,1,Branchiostoma floridae,Xenium,Xenium,brain,,normal,1,42397914,train |
| GSE328169,CRISP enables comparisons of image-based spatial transcriptomic segmentation quality across ten organs,1,Mus musculus,Xenium,Xenium,unknown,,not stated,0,,test |
| GSE328422,Spatio-temporal mapping of immune cell dynamics during human sequential lymph node metastasis,6,Homo sapiens,Xenium,Xenium,lymph node,triple-negative breast carcinoma,disease,6,,train |
| GSE328448,Spatiotemporal transcriptomics characterizes immune microenvironment during mouse liver aging [Spatial Transcriptomics],4,Mus musculus,Stereo-seq,Stereo-seq,liver,,normal,0,42010880,train |
| GSE328460,Single-cell resolution spatial transcriptomics of a mucinous tubular and spindle cell carcinoma using CosMX,1,Homo sapiens,CosMx,CosMx,unknown,carcinoma |
| GSE328481,Uncovering ectopic GC-like niches for tumor reactive lymphocyte priming in lung adenocarcinoma using Stereo-XCR-seq,11,Homo sapiens,Stereo-seq,Stereo-seq,lung,lung adenocarcinoma,disease,0,42547508,train |
| GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],12,Mus musculus,Xenium,Xenium,spinal cord,,perturbation |
| GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],11,Mus musculus,Xenium,Xenium,lung,cryptococcosis,normal;disease,11,42209491,train |
| GSE329112,Aging disrupts spatiotemporal coordination in the cycling murine ovary,69,Mus musculus,Slide-seq,Slide-seq,ovary,,normal,0,42310395,val |
| GSE329229,Analysis of mouse livers fed with high cholesterol diet and alcohol by spatial transcriptomics,1,Mus musculus,Xenium,Xenium,liver,,perturbation,1,,train |
| GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,6,Mus musculus,Xenium,Xenium,bone,,disease;perturbation,6,,train |
| GSE329718,"Spatial resolved single-cell dissection of mouse insula cortex organization, projection and function",120,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal;perturbation,0,,train |
| GSE330153,Transcriptomic Signatures of Hippocampal Active Place Avoidance Memory Maintenance,4,Mus musculus,Visium,Visium,brain,,perturbation;normal,4,,val |
| GSE330163,Human Myometrial Cell Fate under Chronic Oxidative Stress for Leiomyomagenesis,2,Homo sapiens,Visium HD,Visium HD,uterus,,not stated,0,42539031,train |
| GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,303,Homo sapiens,Visium,Visium,spinal cord |
| GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,4,Mus musculus,Xenium,Xenium,brain,tauopathy,normal;disease,4,42557563,train |
| GSE330849,MERFISH spatial transcriptomic profiling of Sst+ interneurons in the postnatal mouse brain,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal,0,42547805,train |
| GSE330886,The challenges of single cell transcriptomics on difficult human tissue: the placenta [Xenium],1,Homo sapiens,Xenium,Xenium,placenta,,normal,1,42466067,train |
| GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,51,Homo sapiens,Xenium,Xenium,colon |
| GSE331133,Single-Cell and Spatial Multi-Omics Reveal Estrogen-Mediated Vaginal Wall Microenvironment Remodeling and a Perivascular Reparative Niche in Postmenopausal Pelvic Organ Prolapse,2,Homo sapiens,Visium HD,Visium HD,other,reproductive system disorder;pelvic organ prolapse,disease,2,,train |
| GSE331225,TRPV1–STAT3 signaling as a driver of lethal pathology during pneumococcal nose-to-brain invasion,2,Mus musculus,Visium HD,Visium HD,airway |
| GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,4,Mus musculus,Visium,Visium,heart,myocardial infarction,disease,4,,train |
| GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,4,Homo sapiens,Visium,Visium,brain,brain glioblastoma,disease,4,42350396,train |
| GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,5,Homo sapiens,Visium,Visium,heart,heart disorder;cardiomyopathy,disease,4,,val |
| GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,7,Homo sapiens,Xenium,Xenium,other |
| GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],12,Homo sapiens,Visium,Visium,spleen,myelofibrosis,normal;disease,12,,train |
| GSE332601,Spatial transcriptomics profiling of NDMA-induced liver injury in Mgmt-deficient mice across sex and time,4,Mus musculus,Visium,Visium,liver,,perturbation,4,,train |
| GSE332618,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics [Spatial Transcriptomics],15,Homo sapiens,Visium HD,Visium HD,unknown |
| GSE332731,Local control of Cre-regulated genetic modeling in vivo using wireless implantable optoelectronics [Spatial transcriptomics],2,Mus musculus,Visium HD,Visium HD,lung,,disease,2,,train |
| GSE332850,Xenium Spatial Transcriptomics Reveals the Mechanism of TGFBRIIDN-Armored GPC3-CAR-T Cells in Hepatocellular Carcinoma Patients,4,Homo sapiens,Xenium,Xenium,liver,hepatocellular carcinoma,disease,0,,train |
| GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],4,Homo sapiens,Visium HD,Visium HD,small intestine,duodenal disorder;celiac disease,normal;disease,4,,train |
| GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,13,Mus musculus,Visium,Visium,placenta,,perturbation,13,,val |
| GSE333479,A unified spatial transcriptome profiling of ten mouse organs,21,Mus musculus,Stereo-seq,Stereo-seq,colon |
| GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,kidney,systemic lupus erythematosus,disease,4,42679049,train |
| GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,4,Homo sapiens,Visium,Visium,skin,Stevens-Johnson syndrome,disease;normal,4,,train |
| GSE333685,Vascular smooth muscle cell state trajectories mediate molecular mechanisms of coronary disease risk,1,Mus musculus,Xenium,Xenium,blood vessel,coronary artery disorder,disease,1,41844614,train |
| GSE333693,Rat thymic epithelium-free areas are specialized medullary niches enriched for mature thymocytes and distinct stromal subsets,1,Rattus norvegicus,Stereo-seq,Stereo-seq,thymus,,normal,0,,train |
| GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,3,Gallus gallus,DBiT-seq,DBiT-seq,lung,,normal,0,42446999,train |
| GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,12,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,pancreas,diabetes mellitus,normal;disease,0,,train |
| GSE333851,Spatial Glyco-Codes Define Human Liver Pathology and Progression,1,Homo sapiens,DBiT-seq,DBiT-seq,liver,hepatocellular carcinoma,disease,0,42465518,train |
| GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,32,Mus musculus,Visium,Visium,colon,colitis,disease,32,42521760,train |
| GSE334308,Mapping vascular plasticity in liver fibrogenesis identifies novel fibrosis-associated endothelial cells in early-stage liver disease,2,Homo sapiens,Visium HD,Visium HD,liver,liver disorder,disease,2,,train |
| GSE334323,Custom Probe-Based Spatial Transcriptomics Enables Microbiome Detection in FFPE Colorectal Cancer Tissue,6,Homo sapiens,Visium,Visium,colon,adenocarcinoma |
| GSE334364,Spatial Transcriptomic Atlas Reveals that FOXO3-Mediated Mitochondrial Dynamics Imbalance Drives Premature Ovarian Insufficiency in Mice,1,Mus musculus,Xenium,Xenium,ovary,ovarian dysfunction,disease,1,42435003,test |
| GSE334433,Tissue composition shapes differential skeletal integration strategies during axolotl limb regeneration [Spatial Transcriptomics],6,Ambystoma mexicanum,Visium,Visium,other,,perturbation,6,,train |
| GSE334924,Matched single-cell and Visium HD spatial transcriptomics of a chronic antibody-mediated rejection kidney graft,1,Homo sapiens,Visium HD,Visium HD,kidney,,disease,1,,train |
| GSE334959,Cerebellar and cerebral frontal lobe alterations in pulmonary hypertension: Evidence of an inflammatory lung vascular-brain axis [Spatial Transcriptomics],13,Mus musculus,Visium,Visium,brain,pulmonary hypertension,disease;normal,13,,test |
| GSE335102,Spatial transcriptomic analysis of Yersinia pseudotuberculosis infected ileum reveals novel enterocyte transcriptional state and bacterial localization,1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,Yersinia pseudotuberculosis infectious disease,disease,0,,train |
| GSE335126,10x Genomics Xenium analysis of adult and aged mouse brain control and heat stress cohorts,2,Mus musculus,Xenium,Xenium,brain,,perturbation;normal,1,,train |
| GSE335181,Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids,2,Homo sapiens,Visium,Visium,other |
| GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,4,Mus musculus,Xenium,Xenium,lung,lung cancer,disease,4,,train |
| GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],6,Homo sapiens,Xenium,Xenium,brain,IDH-wildtype glioblastoma |
| GSE335345,"10X Visium spatial transcriptomics of mouse thoracic spine intervertebral disc, IVD2 (area D1)",1,Mus musculus,Visium,Visium,bone,,perturbation,0,,train |
| GSE335533,Epigenetic reprogramming of CD4⁺ T cell fate by maternal and early-life obesity impairs vaccine responses in the offspring [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,lymph node,,perturbation,2,,train |
| GSE335552,An Integrated Spatial Multi-Omics Workflow for Sequential RNA and Protein Profiling in FFPE Tumor Tissue,4,Homo sapiens,Xenium,Xenium,liver,neoplasm,disease;normal,4,,train |
| GSE335564,A comparative brain cell atlas of Astyanax mexicanus,1,Astyanax mexicanus,Other,not named in GEO,brain,,normal,0,42395481,train |
| GSE335592,CAR-T-drug conjugate against solid tumor,2,Homo sapiens,DBiT-seq,DBiT-seq,lung,neoplasm,disease,0,,val |
| GSE335624,Initial OX40–OX40L Signaling Promotes a Skin-Resident Memory T-Cell Reservoir in Atopic Dermatitis,1,Homo sapiens,Xenium,Xenium,skin,atopic eczema |
| GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,8,Mus musculus,Visium |
| GSE335777,Resident tissue macrophages transfer selenium transporter protein to protect pancreatic cancer from ferroptosis,1,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,,train |
| GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,15,Homo sapiens,Xenium,Xenium,brain,,normal,15,,train |
| GSE335962,Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 2],6,Homo sapiens,Xenium,Xenium,bone marrow,clonal hematopoiesis,disease;normal,0,,train |
| GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,10,Mus musculus,Xenium,Xenium,spinal cord,,normal;perturbation,10,,train |
| GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,4,Mus musculus,Xenium,Xenium,lung,tuberculosis,disease,4,42427735,train |
| GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,9,Homo sapiens,Xenium,Xenium,lung,,disease,9,,train |
| GSE336633,Spatial Transcriptomics of MHC Expression in Mauritian Cynomolgus Macaque Tissues,16,Macaca fascicularis,Visium HD,Visium HD,liver |
| GSE336853,New taxonomy based on individual patient-reported response trajectories defines ulcerative colitis endotypes and reveals vascular inflammation as a mechanism for vedolizumab nonresponse.,8,Homo sapiens,CosMx,CosMx,rectum,ulcerative colitis,disease,0,,train |
| GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,9,Homo sapiens,Xenium,Xenium,kidney,interstitial nephritis |
| GSE337131,Spatial transcriptomics of early-grade Huntington’s disease and control Caudate,2,Homo sapiens,Visium HD,Visium HD,brain,Huntington disease,disease,0,,val |
| GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",16,Mus musculus,Xenium,Xenium,brain,,normal,16,,train |
| GSE337336,Genomic and spatial transcriptomics identify fibroblast-associated microenvironment in early mycosis fungoides progression,16,Homo sapiens,CosMx,CosMx,skin,mycosis fungoides,disease,0,,val |
| GSE337521,"Efficacy, safety, and spatial transcriptomic rationale of orelabrutinib plus obinutuzumab in marginal zone lymphoma",2,Homo sapiens,Visium HD,Visium HD,thyroid |
| GSE337537,Persistent Lung Inflammation and Fibrosis After Mouse-Adapted Omicron BA.1 Infection,2,Mus musculus,Visium,Visium,lung,infectious disease,normal;disease,2,,train |
| GSE337578,The spatial transcriptomics of the mouse brain 3 days after tMCAO,1,Mus musculus,Other,SeekSpace,brain,,disease,0,,train |
| GSE337623,GDF15 Suppresses Liver Inflammation Independently of Weight Loss through Neuroendocrine Glucocorticoid Signaling,4,Mus musculus,Visium,Visium,liver,,perturbation,4,,train |
| GSE337859,Exploratory Single-nucleus Multiomics of Myeloid Cell States Associated with Neoadjuvant Chemotherapy Response in Human Pancreatic Ductal Adenocarcinoma,2,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,42735906,train |
| GSE337933,PTPN1/2 inhibits alveolar macrophage-mediated control of lung metastasis [CosMx SMI],1,Mus musculus,CosMx,CosMx,lymph node,,disease,0,,val |
| GSE338104,Iron-Catalyzed Oxidative Stress Reveals an Exposome-Related Ferroptosis-Resistant Karyomegalic Niche in BRCA1-Linked Renal Carcinogenesis,6,Rattus norvegicus,Xenium,Xenium,kidney,,normal;perturbation,6,42442115,train |
| GSE338249,Spatiotemporal transcriptome atlas of water lily floral organogenesis provide insight to the evolutionary origin of novel traits of angiosperms [Spatial Transcriptomics],5,Nymphaea colorata,BMK S1000,BMKMANU S1000/S3000,plant,,normal,0,,test |
| GSE338404,MALADAPTIVE IMMUNE-FIBROTIC AXIS DRIVES IMPAIRED LONG BONE REGENERATION UNDER MECHANICAL INSTABILITY,2,Mus musculus,Visium,Visium,bone,bone fracture,disease,2,42664332,test |
| GSE338506,Spatial transcriptomic profiling of human gastric cancer FFPE specimens,1,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,0,,train |
| GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,16,Homo sapiens,Visium,Visium,liver,liver disorder;biliary atresia |
| GSE338671,A Novel Heterozygous STAT5B Loss-of-Function Variant Associated with Interleukin-17A-Responsive Systemic Juvenile Idiopathic Arthritis-like Disease,3,Homo sapiens,Xenium,Xenium,other,juvenile idiopathic arthritis,disease,3,,train |
| GSE339304,Multimodal spatial profiling reveals distinct myeloid-defined ENKTL subgroups and tumor-myeloid cooperativity within prognostic inflammatory niche [ENKTL_CosMx6x],1,Homo sapiens,CosMx,CosMx,unknown,extranodal nasal NK/T cell lymphoma,disease,0,,train |
| GSE339455,Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,kidney,hypertensive nephropathy,disease,4,,val |
| GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,8,Leucoraja erinaceus,Xenium,Xenium,other,,normal,8,,train |
| GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,12,Homo sapiens,Visium,Visium,brain,astrocytoma (excluding glioblastoma) |
| GSE341250,Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid,2,Homo sapiens,Xenium,Xenium,skin,keloid,disease,2,,train |
| GSE341382,Spatial transcriptomics of mouse lung after tumor induction.,2,Mus musculus,Visium HD,Visium HD,lung,neoplasm,disease,2,,train |
| GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],18,Macaca mulatta,Visium,Visium,colon;small intestine,infectious disease,disease,18,42614350,train |
| GSE341914,Spatial transcriptomic atlas of intestinal segments from KM mice,6,Mus musculus,Stereo-seq,Stereo-seq,colon |
| GSE341918,Dual host-pathogen screening of the lung during severe influenza using spatial transcriptomics,4,Mus musculus,Slide-seq,Curio Seeker,lung,influenza,disease,0,,train |
| GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,12,Mus musculus,Xenium,Xenium,pancreas,malignant pancreatic neoplasm,disease,12,,train |
| GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,4,Mus musculus,Xenium,Xenium,brain,,normal,0,,train |
| GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],4,Homo sapiens,Xenium,Xenium,brain,,normal,4,,train |
| GSE342343,The role of Angiopoietin 1 in acute-on-chronic liver failure,1,Mus musculus,Xenium,Xenium,liver,chronic liver failure,disease,1,,train |
| GSE342671,"Longitudinal single-cell and spatial transcriptomics reveals intratumor heterogeneity, therapeutic response, and comparative value of canine marginal zone lymphoma [spatial data]",1,Canis lupus familiaris,Visium,Visium,unknown,marginal zone lymphoma,disease,1,,val |
| GSE342687,Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma,6,Homo sapiens,Visium,Visium,head and neck,adenoid cystic carcinoma,disease,6,,train |
| GSE342703,Spatial-SCB,4,Homo sapiens,Visium HD,Visium HD,bone,,not stated,4,,train |
| GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],51,Homo sapiens,Visium,Visium,brain,,normal,51,,train |
| GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],5,Homo sapiens,Visium HD,Visium HD,brain,,normal,5,,train |
| GSE342913,"In situ targeted gene expression analysis of postnatal mouse cortex of LgDel model 22q11.2 deletion sydnrome, including treatment with antioxidant",5,Mus musculus,Xenium,Xenium,brain,,normal;disease;perturbation,5,,train |
| GSE343063,Spatially Resolved Cell-Cell Communication in Small Cell Lung Cancer Reveals Macrophage-Driven Immune Evasion Programs,5,Homo sapiens,Xenium,Xenium,lung,small cell lung carcinoma,disease,4,,train |
| GSE343350,Multi-tissue gene expression in HNSCC,2,Homo sapiens,Xenium,Xenium,head and neck,head and neck squamous cell carcinoma,disease,2,,train |
| GSE343400,Gelated Apoptotic Extracellular Vesicles via Enzyme-Instructed Self-Assembly with Multifunctional Microcapsule for Targeted Atherosclerosis Therapy,2,Mus musculus,Stereo-seq,Stereo-seq,blood vessel,atherosclerosis,normal;disease,0,,train |
| GSE343862,Zonated Cholesterol Sensing by SIRT2 Drives MASLD-HCC [Spatial transcriptomics],6,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis |
| GSE344364,A single-cell and spatial transcriptomic atlas provides insights into the genetic regulation of secondary growth and specialized metabolism in the carrot taproot [Spatial Transcriptomics],1,Daucus carota,Stereo-seq,Stereo-seq,plant,,normal,0,,train |
| GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,32,Homo sapiens,Visium,Visium,unknown,diffuse large B-cell lymphoma,disease,32,,train |
| GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,8,Homo sapiens,Xenium,Xenium,ovary |
| GSE344594,Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism,4,Canis lupus familiaris,Visium,Visium,testis,disorder of sexual differentiation;cryptorchidism;male reproductive system disorder,disease,0,,val |
| GSE344692,Placental TRPV2 supports trophoblast function and normal fetal development [MERSCOPE],4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,placenta |
| GSE344748,REM sleep readiness and duration are encoded during NREM by spinal-projecting sublaterodorsal (SLD) neurons.,4,Mus musculus,Slide-seq,Slide-seq,brain,,perturbation,0,,val |
| GSE344969,Spatial transcriptomic profiling of calcified human coronary artery lesions,2,Homo sapiens,Visium,Visium,blood vessel,calcinosis,disease,2,,train |
| GSE345289,Gene expression mapping of eye after adipocyte depletion,2,Mus musculus,Xenium,Xenium,eye,,perturbation,2,,val |
| GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,8,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,8,42678098,train |
| GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,4,Mesocricetus auratus,Xenium,Xenium,brain,,normal,1,,train |
| GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],6,Homo sapiens,Xenium,Xenium,heart,,disease;normal,6,,test |
| GSE345644,Human bladder cell spatial mapping [Xenium],1,Homo sapiens,Xenium,Xenium,bladder,,normal,1,,val |
| GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,8,Homo sapiens,Xenium,Xenium,peripheral nerve,acoustic neuroma |
| GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,5,Homo sapiens,Visium,Visium,skin,hidradenitis suppurativa,disease,5,,test |
| GSE346722,Spatial compartmentalization shapes distinct germinal center states during respiratory viral infection,2,Macaca fascicularis,Xenium,Xenium,lymph node,COVID-19,disease,2,,val |
| GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,16,Mus musculus,Visium,Visium,brain,,normal,16,,test |
| GSE348514,Xenium In Situ Spatial Perturb-Seq: Single-cell Functional Genomics of the Mouse Brain,2,Mus musculus,Xenium,Xenium,brain,,perturbation,2,,train |
| GSE348584,A single cell and spatial atlas of preinvasive breast cancer,15,Homo sapiens,Xenium,Xenium,breast,ductal breast carcinoma in situ,disease;normal,15,,test |
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