barkai_compendium / README.md
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license: mit

Barkai Compendium

This collects the ChEC-seq data from the following GEO series:

  • GSE179430
  • GSE209631
  • GSE222268

The metadata for each is parsed out from the SraRunTable, or in the case of GSE222268, the NCBI series matrix file (the genotype isn't in the SraRunTable)

The Barkai lab refers to this set as their binding compendium.

Dataset Details

Data Structure