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13,800
pysal/mapclassify
mapclassify/classifiers.py
Max_P_Classifier._ss
def _ss(self, class_def): """calculates sum of squares for a class""" yc = self.y[class_def] css = yc - yc.mean() css *= css return sum(css)
python
def _ss(self, class_def): """calculates sum of squares for a class""" yc = self.y[class_def] css = yc - yc.mean() css *= css return sum(css)
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calculates sum of squares for a class
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5b22ec33f5802becf40557614d90cd38efa1676e
https://github.com/pysal/mapclassify/blob/5b22ec33f5802becf40557614d90cd38efa1676e/mapclassify/classifiers.py#L2178-L2183
13,801
pysal/mapclassify
mapclassify/classifiers.py
Max_P_Classifier._swap
def _swap(self, class1, class2, a): """evaluate cost of moving a from class1 to class2""" ss1 = self._ss(class1) ss2 = self._ss(class2) tss1 = ss1 + ss2 class1c = copy.copy(class1) class2c = copy.copy(class2) class1c.remove(a) class2c.append(a) ss1...
python
def _swap(self, class1, class2, a): """evaluate cost of moving a from class1 to class2""" ss1 = self._ss(class1) ss2 = self._ss(class2) tss1 = ss1 + ss2 class1c = copy.copy(class1) class2c = copy.copy(class2) class1c.remove(a) class2c.append(a) ss1...
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evaluate cost of moving a from class1 to class2
[ "evaluate", "cost", "of", "moving", "a", "from", "class1", "to", "class2" ]
5b22ec33f5802becf40557614d90cd38efa1676e
https://github.com/pysal/mapclassify/blob/5b22ec33f5802becf40557614d90cd38efa1676e/mapclassify/classifiers.py#L2185-L2200
13,802
abarker/pdfCropMargins
src/pdfCropMargins/calculate_bounding_boxes.py
get_bounding_box_list_render_image
def get_bounding_box_list_render_image(pdf_file_name, input_doc): """Calculate the bounding box list by directly rendering each page of the PDF as an image file. The MediaBox and CropBox values in input_doc should have already been set to the chosen page size before the rendering.""" program_to_use = ...
python
def get_bounding_box_list_render_image(pdf_file_name, input_doc): """Calculate the bounding box list by directly rendering each page of the PDF as an image file. The MediaBox and CropBox values in input_doc should have already been set to the chosen page size before the rendering.""" program_to_use = ...
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Calculate the bounding box list by directly rendering each page of the PDF as an image file. The MediaBox and CropBox values in input_doc should have already been set to the chosen page size before the rendering.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/calculate_bounding_boxes.py#L116-L206
13,803
abarker/pdfCropMargins
src/pdfCropMargins/calculate_bounding_boxes.py
render_pdf_file_to_image_files
def render_pdf_file_to_image_files(pdf_file_name, output_filename_root, program_to_use): """Render all the pages of the PDF file at pdf_file_name to image files with path and filename prefix given by output_filename_root. Any directories must have already been created, and the calling program is responsibl...
python
def render_pdf_file_to_image_files(pdf_file_name, output_filename_root, program_to_use): """Render all the pages of the PDF file at pdf_file_name to image files with path and filename prefix given by output_filename_root. Any directories must have already been created, and the calling program is responsibl...
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Render all the pages of the PDF file at pdf_file_name to image files with path and filename prefix given by output_filename_root. Any directories must have already been created, and the calling program is responsible for deleting any directories or image files. The program program_to_use, currently ei...
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/calculate_bounding_boxes.py#L208-L237
13,804
abarker/pdfCropMargins
src/pdfCropMargins/calculate_bounding_boxes.py
calculate_bounding_box_from_image
def calculate_bounding_box_from_image(im, curr_page): """This function uses a PIL routine to get the bounding box of the rendered image.""" xMax, y_max = im.size bounding_box = im.getbbox() # note this uses ltrb convention if not bounding_box: #print("\nWarning: could not calculate a boundin...
python
def calculate_bounding_box_from_image(im, curr_page): """This function uses a PIL routine to get the bounding box of the rendered image.""" xMax, y_max = im.size bounding_box = im.getbbox() # note this uses ltrb convention if not bounding_box: #print("\nWarning: could not calculate a boundin...
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This function uses a PIL routine to get the bounding box of the rendered image.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/calculate_bounding_boxes.py#L239-L270
13,805
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
samefile
def samefile(path1, path2): """Test if paths refer to the same file or directory.""" if system_os == "Linux" or system_os == "Cygwin": return os.path.samefile(path1, path2) return (get_canonical_absolute_expanded_path(path1) == get_canonical_absolute_expanded_path(path2))
python
def samefile(path1, path2): """Test if paths refer to the same file or directory.""" if system_os == "Linux" or system_os == "Cygwin": return os.path.samefile(path1, path2) return (get_canonical_absolute_expanded_path(path1) == get_canonical_absolute_expanded_path(path2))
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Test if paths refer to the same file or directory.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L135-L140
13,806
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
convert_windows_path_to_cygwin
def convert_windows_path_to_cygwin(path): """Convert a Windows path to a Cygwin path. Just handles the basic case.""" if len(path) > 2 and path[1] == ":" and path[2] == "\\": newpath = cygwin_full_path_prefix + "/" + path[0] if len(path) > 3: newpath += "/" + path[3:] path = newpath ...
python
def convert_windows_path_to_cygwin(path): """Convert a Windows path to a Cygwin path. Just handles the basic case.""" if len(path) > 2 and path[1] == ":" and path[2] == "\\": newpath = cygwin_full_path_prefix + "/" + path[0] if len(path) > 3: newpath += "/" + path[3:] path = newpath ...
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Convert a Windows path to a Cygwin path. Just handles the basic case.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L167-L174
13,807
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
remove_program_temp_directory
def remove_program_temp_directory(): """Remove the global temp directory and all its contents.""" if os.path.exists(program_temp_directory): max_retries = 3 curr_retries = 0 time_between_retries = 1 while True: try: shutil.rmtree(program_temp_directory...
python
def remove_program_temp_directory(): """Remove the global temp directory and all its contents.""" if os.path.exists(program_temp_directory): max_retries = 3 curr_retries = 0 time_between_retries = 1 while True: try: shutil.rmtree(program_temp_directory...
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Remove the global temp directory and all its contents.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L191-L208
13,808
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
call_external_subprocess
def call_external_subprocess(command_list, stdin_filename=None, stdout_filename=None, stderr_filename=None, env=None): """Run the command and arguments in the command_list. Will search the system PATH for commands to execute, but no shell is started. Redirects any...
python
def call_external_subprocess(command_list, stdin_filename=None, stdout_filename=None, stderr_filename=None, env=None): """Run the command and arguments in the command_list. Will search the system PATH for commands to execute, but no shell is started. Redirects any...
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Run the command and arguments in the command_list. Will search the system PATH for commands to execute, but no shell is started. Redirects any selected outputs to the given filename. Waits for command completion.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L279-L306
13,809
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
run_external_subprocess_in_background
def run_external_subprocess_in_background(command_list, env=None): """Runs the command and arguments in the list as a background process.""" if system_os == "Windows": DETACHED_PROCESS = 0x00000008 p = subprocess.Popen(command_list, shell=False, stdin=None, stdout=None, stderr=No...
python
def run_external_subprocess_in_background(command_list, env=None): """Runs the command and arguments in the list as a background process.""" if system_os == "Windows": DETACHED_PROCESS = 0x00000008 p = subprocess.Popen(command_list, shell=False, stdin=None, stdout=None, stderr=No...
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Runs the command and arguments in the list as a background process.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L308-L317
13,810
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
function_call_with_timeout
def function_call_with_timeout(fun_name, fun_args, secs=5): """Run a Python function with a timeout. No interprocess communication or return values are handled. Setting secs to 0 gives infinite timeout.""" from multiprocessing import Process, Queue p = Process(target=fun_name, args=tuple(fun_args)) ...
python
def function_call_with_timeout(fun_name, fun_args, secs=5): """Run a Python function with a timeout. No interprocess communication or return values are handled. Setting secs to 0 gives infinite timeout.""" from multiprocessing import Process, Queue p = Process(target=fun_name, args=tuple(fun_args)) ...
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Run a Python function with a timeout. No interprocess communication or return values are handled. Setting secs to 0 gives infinite timeout.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L331-L349
13,811
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
fix_pdf_with_ghostscript_to_tmp_file
def fix_pdf_with_ghostscript_to_tmp_file(input_doc_fname): """Attempt to fix a bad PDF file with a Ghostscript command, writing the output PDF to a temporary file and returning the filename. Caller is responsible for deleting the file.""" if not gs_executable: init_and_test_gs_executable(exit_on_fail=...
python
def fix_pdf_with_ghostscript_to_tmp_file(input_doc_fname): """Attempt to fix a bad PDF file with a Ghostscript command, writing the output PDF to a temporary file and returning the filename. Caller is responsible for deleting the file.""" if not gs_executable: init_and_test_gs_executable(exit_on_fail=...
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Attempt to fix a bad PDF file with a Ghostscript command, writing the output PDF to a temporary file and returning the filename. Caller is responsible for deleting the file.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L532-L554
13,812
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
get_bounding_box_list_ghostscript
def get_bounding_box_list_ghostscript(input_doc_fname, res_x, res_y, full_page_box): """Call Ghostscript to get the bounding box list. Cannot set a threshold with this method.""" if not gs_executable: init_and_test_gs_executable(exit_on_fail=True) res = str(res_x) + "x" + str(res_y) box_arg = "-dU...
python
def get_bounding_box_list_ghostscript(input_doc_fname, res_x, res_y, full_page_box): """Call Ghostscript to get the bounding box list. Cannot set a threshold with this method.""" if not gs_executable: init_and_test_gs_executable(exit_on_fail=True) res = str(res_x) + "x" + str(res_y) box_arg = "-dU...
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Call Ghostscript to get the bounding box list. Cannot set a threshold with this method.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L556-L602
13,813
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
render_pdf_file_to_image_files_pdftoppm_ppm
def render_pdf_file_to_image_files_pdftoppm_ppm(pdf_file_name, root_output_file_path, res_x=150, res_y=150, extra_args=None): """Use the pdftoppm program to render a PDF file to .png images. The root_output_file_path is prepended to all the output files, which have nu...
python
def render_pdf_file_to_image_files_pdftoppm_ppm(pdf_file_name, root_output_file_path, res_x=150, res_y=150, extra_args=None): """Use the pdftoppm program to render a PDF file to .png images. The root_output_file_path is prepended to all the output files, which have nu...
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Use the pdftoppm program to render a PDF file to .png images. The root_output_file_path is prepended to all the output files, which have numbers and extensions added. Extra arguments can be passed as a list in extra_args. Return the command output.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L604-L624
13,814
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
render_pdf_file_to_image_files_pdftoppm_pgm
def render_pdf_file_to_image_files_pdftoppm_pgm(pdf_file_name, root_output_file_path, res_x=150, res_y=150): """Same as renderPdfFileToImageFile_pdftoppm_ppm but with -gray option for pgm.""" comm_output = render_pdf_file_to_image_files_pdftoppm_ppm(pdf_file_name, ...
python
def render_pdf_file_to_image_files_pdftoppm_pgm(pdf_file_name, root_output_file_path, res_x=150, res_y=150): """Same as renderPdfFileToImageFile_pdftoppm_ppm but with -gray option for pgm.""" comm_output = render_pdf_file_to_image_files_pdftoppm_ppm(pdf_file_name, ...
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Same as renderPdfFileToImageFile_pdftoppm_ppm but with -gray option for pgm.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L626-L632
13,815
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
render_pdf_file_to_image_files__ghostscript_png
def render_pdf_file_to_image_files__ghostscript_png(pdf_file_name, root_output_file_path, res_x=150, res_y=150): """Use Ghostscript to render a PDF file to .png images. The root_output_file_path is prepended...
python
def render_pdf_file_to_image_files__ghostscript_png(pdf_file_name, root_output_file_path, res_x=150, res_y=150): """Use Ghostscript to render a PDF file to .png images. The root_output_file_path is prepended...
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Use Ghostscript to render a PDF file to .png images. The root_output_file_path is prepended to all the output files, which have numbers and extensions added. Return the command output.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L634-L648
13,816
abarker/pdfCropMargins
src/pdfCropMargins/external_program_calls.py
show_preview
def show_preview(viewer_path, pdf_file_name): """Run the PDF viewer at the path viewer_path on the file pdf_file_name.""" try: cmd = [viewer_path, pdf_file_name] run_external_subprocess_in_background(cmd) except (subprocess.CalledProcessError, OSError, IOError) as e: print("\nWarning...
python
def show_preview(viewer_path, pdf_file_name): """Run the PDF viewer at the path viewer_path on the file pdf_file_name.""" try: cmd = [viewer_path, pdf_file_name] run_external_subprocess_in_background(cmd) except (subprocess.CalledProcessError, OSError, IOError) as e: print("\nWarning...
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Run the PDF viewer at the path viewer_path on the file pdf_file_name.
[ "Run", "the", "PDF", "viewer", "at", "the", "path", "viewer_path", "on", "the", "file", "pdf_file_name", "." ]
55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/external_program_calls.py#L673-L682
13,817
abarker/pdfCropMargins
src/pdfCropMargins/pdfCropMargins.py
main
def main(): """Run main, catching any exceptions and cleaning up the temp directories.""" cleanup_and_exit = sys.exit # Function to do cleanup and exit before the import. exit_code = 0 # Imports are done here inside the try block so some ugly (and useless) # traceback info is avoided on user's ^C ...
python
def main(): """Run main, catching any exceptions and cleaning up the temp directories.""" cleanup_and_exit = sys.exit # Function to do cleanup and exit before the import. exit_code = 0 # Imports are done here inside the try block so some ugly (and useless) # traceback info is avoided on user's ^C ...
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Run main, catching any exceptions and cleaning up the temp directories.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/pdfCropMargins.py#L70-L113
13,818
abarker/pdfCropMargins
src/pdfCropMargins/main_pdfCropMargins.py
get_full_page_box_list_assigning_media_and_crop
def get_full_page_box_list_assigning_media_and_crop(input_doc, quiet=False): """Get a list of all the full-page box values for each page. The argument input_doc should be a PdfFileReader object. The boxes on the list are in the simple 4-float list format used by this program, not RectangleObject format.""...
python
def get_full_page_box_list_assigning_media_and_crop(input_doc, quiet=False): """Get a list of all the full-page box values for each page. The argument input_doc should be a PdfFileReader object. The boxes on the list are in the simple 4-float list format used by this program, not RectangleObject format.""...
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Get a list of all the full-page box values for each page. The argument input_doc should be a PdfFileReader object. The boxes on the list are in the simple 4-float list format used by this program, not RectangleObject format.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/main_pdfCropMargins.py#L207-L236
13,819
abarker/pdfCropMargins
src/pdfCropMargins/main_pdfCropMargins.py
set_cropped_metadata
def set_cropped_metadata(input_doc, output_doc, metadata_info): """Set the metadata for the output document. Mostly just copied over, but "Producer" has a string appended to indicate that this program modified the file. That allows for the undo operation to make sure that this program cropped the file...
python
def set_cropped_metadata(input_doc, output_doc, metadata_info): """Set the metadata for the output document. Mostly just copied over, but "Producer" has a string appended to indicate that this program modified the file. That allows for the undo operation to make sure that this program cropped the file...
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Set the metadata for the output document. Mostly just copied over, but "Producer" has a string appended to indicate that this program modified the file. That allows for the undo operation to make sure that this program cropped the file in the first place.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/main_pdfCropMargins.py#L448-L494
13,820
abarker/pdfCropMargins
src/pdfCropMargins/main_pdfCropMargins.py
apply_crop_list
def apply_crop_list(crop_list, input_doc, page_nums_to_crop, already_cropped_by_this_program): """Apply the crop list to the pages of the input PdfFileReader object.""" if args.restore and not already_cropped_by_this_program: print("\nWarning from pdfCropMargin...
python
def apply_crop_list(crop_list, input_doc, page_nums_to_crop, already_cropped_by_this_program): """Apply the crop list to the pages of the input PdfFileReader object.""" if args.restore and not already_cropped_by_this_program: print("\nWarning from pdfCropMargin...
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Apply the crop list to the pages of the input PdfFileReader object.
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55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/main_pdfCropMargins.py#L497-L562
13,821
abarker/pdfCropMargins
src/pdfCropMargins/main_pdfCropMargins.py
setup_output_document
def setup_output_document(input_doc, tmp_input_doc, metadata_info, copy_document_catalog=True): """Create the output `PdfFileWriter` objects and copy over the relevant info.""" # NOTE: Inserting pages from a PdfFileReader into multiple PdfFileWriters # see...
python
def setup_output_document(input_doc, tmp_input_doc, metadata_info, copy_document_catalog=True): """Create the output `PdfFileWriter` objects and copy over the relevant info.""" # NOTE: Inserting pages from a PdfFileReader into multiple PdfFileWriters # see...
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Create the output `PdfFileWriter` objects and copy over the relevant info.
[ "Create", "the", "output", "PdfFileWriter", "objects", "and", "copy", "over", "the", "relevant", "info", "." ]
55aca874613750ebf4ae69fd8851bdbb7696d6ac
https://github.com/abarker/pdfCropMargins/blob/55aca874613750ebf4ae69fd8851bdbb7696d6ac/src/pdfCropMargins/main_pdfCropMargins.py#L564-L689
13,822
miracle2k/flask-assets
src/flask_assets.py
FlaskConfigStorage.setdefault
def setdefault(self, key, value): """We may not always be connected to an app, but we still need to provide a way to the base environment to set it's defaults. """ try: super(FlaskConfigStorage, self).setdefault(key, value) except RuntimeError: self._defau...
python
def setdefault(self, key, value): """We may not always be connected to an app, but we still need to provide a way to the base environment to set it's defaults. """ try: super(FlaskConfigStorage, self).setdefault(key, value) except RuntimeError: self._defau...
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We may not always be connected to an app, but we still need to provide a way to the base environment to set it's defaults.
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ea9ff985bc96b79edb12ad4bed69403173f75562
https://github.com/miracle2k/flask-assets/blob/ea9ff985bc96b79edb12ad4bed69403173f75562/src/flask_assets.py#L75-L82
13,823
miracle2k/flask-assets
src/flask_assets.py
Environment._app
def _app(self): """The application object to work with; this is either the app that we have been bound to, or the current application. """ if self.app is not None: return self.app ctx = _request_ctx_stack.top if ctx is not None: return ctx.app ...
python
def _app(self): """The application object to work with; this is either the app that we have been bound to, or the current application. """ if self.app is not None: return self.app ctx = _request_ctx_stack.top if ctx is not None: return ctx.app ...
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The application object to work with; this is either the app that we have been bound to, or the current application.
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ea9ff985bc96b79edb12ad4bed69403173f75562
https://github.com/miracle2k/flask-assets/blob/ea9ff985bc96b79edb12ad4bed69403173f75562/src/flask_assets.py#L310-L330
13,824
miracle2k/flask-assets
src/flask_assets.py
Environment.from_yaml
def from_yaml(self, path): """Register bundles from a YAML configuration file""" bundles = YAMLLoader(path).load_bundles() for name in bundles: self.register(name, bundles[name])
python
def from_yaml(self, path): """Register bundles from a YAML configuration file""" bundles = YAMLLoader(path).load_bundles() for name in bundles: self.register(name, bundles[name])
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Register bundles from a YAML configuration file
[ "Register", "bundles", "from", "a", "YAML", "configuration", "file" ]
ea9ff985bc96b79edb12ad4bed69403173f75562
https://github.com/miracle2k/flask-assets/blob/ea9ff985bc96b79edb12ad4bed69403173f75562/src/flask_assets.py#L361-L365
13,825
miracle2k/flask-assets
src/flask_assets.py
Environment.from_module
def from_module(self, path): """Register bundles from a Python module""" bundles = PythonLoader(path).load_bundles() for name in bundles: self.register(name, bundles[name])
python
def from_module(self, path): """Register bundles from a Python module""" bundles = PythonLoader(path).load_bundles() for name in bundles: self.register(name, bundles[name])
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Register bundles from a Python module
[ "Register", "bundles", "from", "a", "Python", "module" ]
ea9ff985bc96b79edb12ad4bed69403173f75562
https://github.com/miracle2k/flask-assets/blob/ea9ff985bc96b79edb12ad4bed69403173f75562/src/flask_assets.py#L367-L371
13,826
persephone-tools/persephone
persephone/__init__.py
handle_unhandled_exception
def handle_unhandled_exception(exc_type, exc_value, exc_traceback): """Handler for unhandled exceptions that will write to the logs""" if issubclass(exc_type, KeyboardInterrupt): # call the default excepthook saved at __excepthook__ sys.__excepthook__(exc_type, exc_value, exc_traceback) ...
python
def handle_unhandled_exception(exc_type, exc_value, exc_traceback): """Handler for unhandled exceptions that will write to the logs""" if issubclass(exc_type, KeyboardInterrupt): # call the default excepthook saved at __excepthook__ sys.__excepthook__(exc_type, exc_value, exc_traceback) ...
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Handler for unhandled exceptions that will write to the logs
[ "Handler", "for", "unhandled", "exceptions", "that", "will", "write", "to", "the", "logs" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/__init__.py#L6-L13
13,827
persephone-tools/persephone
persephone/utterance.py
write_transcriptions
def write_transcriptions(utterances: List[Utterance], tgt_dir: Path, ext: str, lazy: bool) -> None: """ Write the utterance transcriptions to files in the tgt_dir. Is lazy and checks if the file already exists. Args: utterances: A list of Utterance objects to be written. ...
python
def write_transcriptions(utterances: List[Utterance], tgt_dir: Path, ext: str, lazy: bool) -> None: """ Write the utterance transcriptions to files in the tgt_dir. Is lazy and checks if the file already exists. Args: utterances: A list of Utterance objects to be written. ...
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Write the utterance transcriptions to files in the tgt_dir. Is lazy and checks if the file already exists. Args: utterances: A list of Utterance objects to be written. tgt_dir: The directory in which to write the text of the utterances, one file per utterance. ext: The file ...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utterance.py#L45-L65
13,828
persephone-tools/persephone
persephone/utterance.py
remove_duplicates
def remove_duplicates(utterances: List[Utterance]) -> List[Utterance]: """ Removes utterances with the same start_time, end_time and text. Other metadata isn't considered. """ filtered_utters = [] utter_set = set() # type: Set[Tuple[int, int, str]] for utter in utterances: if (utter.sta...
python
def remove_duplicates(utterances: List[Utterance]) -> List[Utterance]: """ Removes utterances with the same start_time, end_time and text. Other metadata isn't considered. """ filtered_utters = [] utter_set = set() # type: Set[Tuple[int, int, str]] for utter in utterances: if (utter.sta...
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Removes utterances with the same start_time, end_time and text. Other metadata isn't considered.
[ "Removes", "utterances", "with", "the", "same", "start_time", "end_time", "and", "text", ".", "Other", "metadata", "isn", "t", "considered", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utterance.py#L67-L80
13,829
persephone-tools/persephone
persephone/utterance.py
make_speaker_utters
def make_speaker_utters(utterances: List[Utterance]) -> Dict[str, List[Utterance]]: """ Creates a dictionary mapping from speakers to their utterances. """ speaker_utters = defaultdict(list) # type: DefaultDict[str, List[Utterance]] for utter in utterances: speaker_utters[utter.speaker].append(utte...
python
def make_speaker_utters(utterances: List[Utterance]) -> Dict[str, List[Utterance]]: """ Creates a dictionary mapping from speakers to their utterances. """ speaker_utters = defaultdict(list) # type: DefaultDict[str, List[Utterance]] for utter in utterances: speaker_utters[utter.speaker].append(utte...
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Creates a dictionary mapping from speakers to their utterances.
[ "Creates", "a", "dictionary", "mapping", "from", "speakers", "to", "their", "utterances", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utterance.py#L106-L113
13,830
persephone-tools/persephone
persephone/utterance.py
remove_too_short
def remove_too_short(utterances: List[Utterance], _winlen=25, winstep=10) -> List[Utterance]: """ Removes utterances that will probably have issues with CTC because of the number of frames being less than the number of tokens in the transcription. Assuming char tokenization to minimize ...
python
def remove_too_short(utterances: List[Utterance], _winlen=25, winstep=10) -> List[Utterance]: """ Removes utterances that will probably have issues with CTC because of the number of frames being less than the number of tokens in the transcription. Assuming char tokenization to minimize ...
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Removes utterances that will probably have issues with CTC because of the number of frames being less than the number of tokens in the transcription. Assuming char tokenization to minimize false negatives.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utterance.py#L128-L141
13,831
persephone-tools/persephone
persephone/distance.py
min_edit_distance
def min_edit_distance( source: Sequence[T], target: Sequence[T], ins_cost: Callable[..., int] = lambda _x: 1, del_cost: Callable[..., int] = lambda _x: 1, sub_cost: Callable[..., int] = lambda x, y: 0 if x == y else 1) -> int: """Calculates the minimum edit distance between two seque...
python
def min_edit_distance( source: Sequence[T], target: Sequence[T], ins_cost: Callable[..., int] = lambda _x: 1, del_cost: Callable[..., int] = lambda _x: 1, sub_cost: Callable[..., int] = lambda x, y: 0 if x == y else 1) -> int: """Calculates the minimum edit distance between two seque...
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Calculates the minimum edit distance between two sequences. Uses the Levenshtein weighting as a default, but offers keyword arguments to supply functions to measure the costs for editing with different elements. Args: ins_cost: A function describing the cost of inserting a given char d...
[ "Calculates", "the", "minimum", "edit", "distance", "between", "two", "sequences", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/distance.py#L9-L51
13,832
persephone-tools/persephone
persephone/distance.py
word_error_rate
def word_error_rate(ref: Sequence[T], hyp: Sequence[T]) -> float: """ Calculate the word error rate of a sequence against a reference. Args: ref: The gold-standard reference sequence hyp: The hypothesis to be evaluated against the reference. Returns: The word error rate of the supp...
python
def word_error_rate(ref: Sequence[T], hyp: Sequence[T]) -> float: """ Calculate the word error rate of a sequence against a reference. Args: ref: The gold-standard reference sequence hyp: The hypothesis to be evaluated against the reference. Returns: The word error rate of the supp...
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Calculate the word error rate of a sequence against a reference. Args: ref: The gold-standard reference sequence hyp: The hypothesis to be evaluated against the reference. Returns: The word error rate of the supplied hypothesis with respect to the reference string. Raises:...
[ "Calculate", "the", "word", "error", "rate", "of", "a", "sequence", "against", "a", "reference", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/distance.py#L178-L200
13,833
persephone-tools/persephone
persephone/model.py
dense_to_human_readable
def dense_to_human_readable(dense_repr: Sequence[Sequence[int]], index_to_label: Dict[int, str]) -> List[List[str]]: """ Converts a dense representation of model decoded output into human readable, using a mapping from indices to labels. """ transcripts = [] for dense_r in dense_repr: non_empty...
python
def dense_to_human_readable(dense_repr: Sequence[Sequence[int]], index_to_label: Dict[int, str]) -> List[List[str]]: """ Converts a dense representation of model decoded output into human readable, using a mapping from indices to labels. """ transcripts = [] for dense_r in dense_repr: non_empty...
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Converts a dense representation of model decoded output into human readable, using a mapping from indices to labels.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/model.py#L36-L46
13,834
persephone-tools/persephone
persephone/model.py
decode
def decode(model_path_prefix: Union[str, Path], input_paths: Sequence[Path], label_set: Set[str], *, feature_type: str = "fbank", #TODO Make this None and infer feature_type from dimension of NN input layer. batch_size: int = 64, feat_dir: Optional[Path]...
python
def decode(model_path_prefix: Union[str, Path], input_paths: Sequence[Path], label_set: Set[str], *, feature_type: str = "fbank", #TODO Make this None and infer feature_type from dimension of NN input layer. batch_size: int = 64, feat_dir: Optional[Path]...
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Use an existing tensorflow model that exists on disk to decode WAV files. Args: model_path_prefix: The path to the saved tensorflow model. This is the full prefix to the ".ckpt" file. input_paths: A sequence of `pathlib.Path`s to WAV files to put through ...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/model.py#L68-L153
13,835
persephone-tools/persephone
persephone/model.py
Model.eval
def eval(self, restore_model_path: Optional[str]=None) -> None: """ Evaluates the model on a test set.""" saver = tf.train.Saver() with tf.Session(config=allow_growth_config) as sess: if restore_model_path: logger.info("restoring model from %s", restore_model_path) ...
python
def eval(self, restore_model_path: Optional[str]=None) -> None: """ Evaluates the model on a test set.""" saver = tf.train.Saver() with tf.Session(config=allow_growth_config) as sess: if restore_model_path: logger.info("restoring model from %s", restore_model_path) ...
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Evaluates the model on a test set.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/model.py#L258-L299
13,836
persephone-tools/persephone
persephone/model.py
Model.output_best_scores
def output_best_scores(self, best_epoch_str: str) -> None: """Output best scores to the filesystem""" BEST_SCORES_FILENAME = "best_scores.txt" with open(os.path.join(self.exp_dir, BEST_SCORES_FILENAME), "w", encoding=ENCODING) as best_f: print(best_epoch_str, file=b...
python
def output_best_scores(self, best_epoch_str: str) -> None: """Output best scores to the filesystem""" BEST_SCORES_FILENAME = "best_scores.txt" with open(os.path.join(self.exp_dir, BEST_SCORES_FILENAME), "w", encoding=ENCODING) as best_f: print(best_epoch_str, file=b...
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Output best scores to the filesystem
[ "Output", "best", "scores", "to", "the", "filesystem" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/model.py#L301-L306
13,837
persephone-tools/persephone
persephone/corpus.py
ensure_no_set_overlap
def ensure_no_set_overlap(train: Sequence[str], valid: Sequence[str], test: Sequence[str]) -> None: """ Ensures no test set data has creeped into the training set.""" logger.debug("Ensuring that the training, validation and test data sets have no overlap") train_s = set(train) valid_s = set(valid) ...
python
def ensure_no_set_overlap(train: Sequence[str], valid: Sequence[str], test: Sequence[str]) -> None: """ Ensures no test set data has creeped into the training set.""" logger.debug("Ensuring that the training, validation and test data sets have no overlap") train_s = set(train) valid_s = set(valid) ...
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Ensures no test set data has creeped into the training set.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L31-L47
13,838
persephone-tools/persephone
persephone/corpus.py
get_untranscribed_prefixes_from_file
def get_untranscribed_prefixes_from_file(target_directory: Path) -> List[str]: """ The file "untranscribed_prefixes.txt" will specify prefixes which do not have an associated transcription file if placed in the target directory. This will fetch those prefixes from that file and will return an empty ...
python
def get_untranscribed_prefixes_from_file(target_directory: Path) -> List[str]: """ The file "untranscribed_prefixes.txt" will specify prefixes which do not have an associated transcription file if placed in the target directory. This will fetch those prefixes from that file and will return an empty ...
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The file "untranscribed_prefixes.txt" will specify prefixes which do not have an associated transcription file if placed in the target directory. This will fetch those prefixes from that file and will return an empty list if that file does not exist. See find_untranscribed_wavs function for finding un...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L69-L94
13,839
persephone-tools/persephone
persephone/corpus.py
determine_labels
def determine_labels(target_dir: Path, label_type: str) -> Set[str]: """ Returns a set of all phonemes found in the corpus. Assumes that WAV files and label files are split into utterances and segregated in a directory which contains a "wav" subdirectory and "label" subdirectory. Arguments: tar...
python
def determine_labels(target_dir: Path, label_type: str) -> Set[str]: """ Returns a set of all phonemes found in the corpus. Assumes that WAV files and label files are split into utterances and segregated in a directory which contains a "wav" subdirectory and "label" subdirectory. Arguments: tar...
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Returns a set of all phonemes found in the corpus. Assumes that WAV files and label files are split into utterances and segregated in a directory which contains a "wav" subdirectory and "label" subdirectory. Arguments: target_dir: A `Path` to the directory where the corpus data is found lab...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L617-L645
13,840
persephone-tools/persephone
persephone/corpus.py
Corpus.from_elan
def from_elan(cls: Type[CorpusT], org_dir: Path, tgt_dir: Path, feat_type: str = "fbank", label_type: str = "phonemes", utterance_filter: Callable[[Utterance], bool] = None, label_segmenter: Optional[LabelSegmenter] = None, speakers: List[str] = No...
python
def from_elan(cls: Type[CorpusT], org_dir: Path, tgt_dir: Path, feat_type: str = "fbank", label_type: str = "phonemes", utterance_filter: Callable[[Utterance], bool] = None, label_segmenter: Optional[LabelSegmenter] = None, speakers: List[str] = No...
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Construct a `Corpus` from ELAN files. Args: org_dir: A path to the directory containing the unpreprocessed data. tgt_dir: A path to the directory where the preprocessed data will be stored. feat_type: A string describing the input speech featu...
[ "Construct", "a", "Corpus", "from", "ELAN", "files", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L236-L315
13,841
persephone-tools/persephone
persephone/corpus.py
Corpus.set_and_check_directories
def set_and_check_directories(self, tgt_dir: Path) -> None: """ Make sure that the required directories exist in the target directory. set variables accordingly. """ logger.info("Setting up directories for corpus in %s", tgt_dir) # Check directories exist. if not...
python
def set_and_check_directories(self, tgt_dir: Path) -> None: """ Make sure that the required directories exist in the target directory. set variables accordingly. """ logger.info("Setting up directories for corpus in %s", tgt_dir) # Check directories exist. if not...
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Make sure that the required directories exist in the target directory. set variables accordingly.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L338-L355
13,842
persephone-tools/persephone
persephone/corpus.py
Corpus.initialize_labels
def initialize_labels(self, labels: Set[str]) -> Tuple[dict, dict]: """Create mappings from label to index and index to label""" logger.debug("Creating mappings for labels") label_to_index = {label: index for index, label in enumerate( ["pad"] + sorted(list(labe...
python
def initialize_labels(self, labels: Set[str]) -> Tuple[dict, dict]: """Create mappings from label to index and index to label""" logger.debug("Creating mappings for labels") label_to_index = {label: index for index, label in enumerate( ["pad"] + sorted(list(labe...
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Create mappings from label to index and index to label
[ "Create", "mappings", "from", "label", "to", "index", "and", "index", "to", "label" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L357-L366
13,843
persephone-tools/persephone
persephone/corpus.py
Corpus.prepare_feats
def prepare_feats(self) -> None: """ Prepares input features""" logger.debug("Preparing input features") self.feat_dir.mkdir(parents=True, exist_ok=True) should_extract_feats = False for path in self.wav_dir.iterdir(): if not path.suffix == ".wav": l...
python
def prepare_feats(self) -> None: """ Prepares input features""" logger.debug("Preparing input features") self.feat_dir.mkdir(parents=True, exist_ok=True) should_extract_feats = False for path in self.wav_dir.iterdir(): if not path.suffix == ".wav": l...
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Prepares input features
[ "Prepares", "input", "features" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L368-L392
13,844
persephone-tools/persephone
persephone/corpus.py
Corpus.make_data_splits
def make_data_splits(self, max_samples: int) -> None: """ Splits the utterances into training, validation and test sets.""" train_f_exists = self.train_prefix_fn.is_file() valid_f_exists = self.valid_prefix_fn.is_file() test_f_exists = self.test_prefix_fn.is_file() if train_f_e...
python
def make_data_splits(self, max_samples: int) -> None: """ Splits the utterances into training, validation and test sets.""" train_f_exists = self.train_prefix_fn.is_file() valid_f_exists = self.valid_prefix_fn.is_file() test_f_exists = self.test_prefix_fn.is_file() if train_f_e...
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Splits the utterances into training, validation and test sets.
[ "Splits", "the", "utterances", "into", "training", "validation", "and", "test", "sets", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L394-L438
13,845
persephone-tools/persephone
persephone/corpus.py
Corpus.divide_prefixes
def divide_prefixes(prefixes: List[str], seed:int=0) -> Tuple[List[str], List[str], List[str]]: """Divide data into training, validation and test subsets""" if len(prefixes) < 3: raise PersephoneException( "{} cannot be split into 3 groups as it only has {} items".format(pref...
python
def divide_prefixes(prefixes: List[str], seed:int=0) -> Tuple[List[str], List[str], List[str]]: """Divide data into training, validation and test subsets""" if len(prefixes) < 3: raise PersephoneException( "{} cannot be split into 3 groups as it only has {} items".format(pref...
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Divide data into training, validation and test subsets
[ "Divide", "data", "into", "training", "validation", "and", "test", "subsets" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L464-L495
13,846
persephone-tools/persephone
persephone/corpus.py
Corpus.indices_to_labels
def indices_to_labels(self, indices: Sequence[int]) -> List[str]: """ Converts a sequence of indices into their corresponding labels.""" return [(self.INDEX_TO_LABEL[index]) for index in indices]
python
def indices_to_labels(self, indices: Sequence[int]) -> List[str]: """ Converts a sequence of indices into their corresponding labels.""" return [(self.INDEX_TO_LABEL[index]) for index in indices]
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Converts a sequence of indices into their corresponding labels.
[ "Converts", "a", "sequence", "of", "indices", "into", "their", "corresponding", "labels", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L497-L500
13,847
persephone-tools/persephone
persephone/corpus.py
Corpus.labels_to_indices
def labels_to_indices(self, labels: Sequence[str]) -> List[int]: """ Converts a sequence of labels into their corresponding indices.""" return [self.LABEL_TO_INDEX[label] for label in labels]
python
def labels_to_indices(self, labels: Sequence[str]) -> List[int]: """ Converts a sequence of labels into their corresponding indices.""" return [self.LABEL_TO_INDEX[label] for label in labels]
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Converts a sequence of labels into their corresponding indices.
[ "Converts", "a", "sequence", "of", "labels", "into", "their", "corresponding", "indices", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L502-L505
13,848
persephone-tools/persephone
persephone/corpus.py
Corpus.num_feats
def num_feats(self): """ The number of features per time step in the corpus. """ if not self._num_feats: filename = self.get_train_fns()[0][0] feats = np.load(filename) # pylint: disable=maybe-no-member if len(feats.shape) == 3: # Then ther...
python
def num_feats(self): """ The number of features per time step in the corpus. """ if not self._num_feats: filename = self.get_train_fns()[0][0] feats = np.load(filename) # pylint: disable=maybe-no-member if len(feats.shape) == 3: # Then ther...
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The number of features per time step in the corpus.
[ "The", "number", "of", "features", "per", "time", "step", "in", "the", "corpus", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L508-L523
13,849
persephone-tools/persephone
persephone/corpus.py
Corpus.prefixes_to_fns
def prefixes_to_fns(self, prefixes: List[str]) -> Tuple[List[str], List[str]]: """ Fetches the file paths to the features files and labels files corresponding to the provided list of features""" # TODO Return pathlib.Paths feat_fns = [str(self.feat_dir / ("%s.%s.npy" % (prefix, self.feat...
python
def prefixes_to_fns(self, prefixes: List[str]) -> Tuple[List[str], List[str]]: """ Fetches the file paths to the features files and labels files corresponding to the provided list of features""" # TODO Return pathlib.Paths feat_fns = [str(self.feat_dir / ("%s.%s.npy" % (prefix, self.feat...
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Fetches the file paths to the features files and labels files corresponding to the provided list of features
[ "Fetches", "the", "file", "paths", "to", "the", "features", "files", "and", "labels", "files", "corresponding", "to", "the", "provided", "list", "of", "features" ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L525-L533
13,850
persephone-tools/persephone
persephone/corpus.py
Corpus.get_train_fns
def get_train_fns(self) -> Tuple[List[str], List[str]]: """ Fetches the training set of the corpus. Outputs a Tuple of size 2, where the first element is a list of paths to input features files, one per utterance. The second element is a list of paths to the transcriptions. """ ...
python
def get_train_fns(self) -> Tuple[List[str], List[str]]: """ Fetches the training set of the corpus. Outputs a Tuple of size 2, where the first element is a list of paths to input features files, one per utterance. The second element is a list of paths to the transcriptions. """ ...
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Fetches the training set of the corpus. Outputs a Tuple of size 2, where the first element is a list of paths to input features files, one per utterance. The second element is a list of paths to the transcriptions.
[ "Fetches", "the", "training", "set", "of", "the", "corpus", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L535-L542
13,851
persephone-tools/persephone
persephone/corpus.py
Corpus.get_valid_fns
def get_valid_fns(self) -> Tuple[List[str], List[str]]: """ Fetches the validation set of the corpus.""" return self.prefixes_to_fns(self.valid_prefixes)
python
def get_valid_fns(self) -> Tuple[List[str], List[str]]: """ Fetches the validation set of the corpus.""" return self.prefixes_to_fns(self.valid_prefixes)
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Fetches the validation set of the corpus.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L544-L546
13,852
persephone-tools/persephone
persephone/corpus.py
Corpus.review
def review(self) -> None: """ Used to play the WAV files and compare with the transcription. """ for prefix in self.determine_prefixes(): print("Utterance: {}".format(prefix)) wav_fn = self.feat_dir / "{}.wav".format(prefix) label_fn = self.label_dir / "{}.{}".format...
python
def review(self) -> None: """ Used to play the WAV files and compare with the transcription. """ for prefix in self.determine_prefixes(): print("Utterance: {}".format(prefix)) wav_fn = self.feat_dir / "{}.wav".format(prefix) label_fn = self.label_dir / "{}.{}".format...
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Used to play the WAV files and compare with the transcription.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L589-L599
13,853
persephone-tools/persephone
persephone/corpus.py
Corpus.pickle
def pickle(self) -> None: """ Pickles the Corpus object in a file in tgt_dir. """ pickle_path = self.tgt_dir / "corpus.p" logger.debug("pickling %r object and saving it to path %s", self, pickle_path) with pickle_path.open("wb") as f: pickle.dump(self, f)
python
def pickle(self) -> None: """ Pickles the Corpus object in a file in tgt_dir. """ pickle_path = self.tgt_dir / "corpus.p" logger.debug("pickling %r object and saving it to path %s", self, pickle_path) with pickle_path.open("wb") as f: pickle.dump(self, f)
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Pickles the Corpus object in a file in tgt_dir.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus.py#L601-L607
13,854
persephone-tools/persephone
persephone/utils.py
zero_pad
def zero_pad(matrix, to_length): """ Zero pads along the 0th dimension to make sure the utterance array x is of length to_length.""" assert matrix.shape[0] <= to_length if not matrix.shape[0] <= to_length: logger.error("zero_pad cannot be performed on matrix with shape {}" ...
python
def zero_pad(matrix, to_length): """ Zero pads along the 0th dimension to make sure the utterance array x is of length to_length.""" assert matrix.shape[0] <= to_length if not matrix.shape[0] <= to_length: logger.error("zero_pad cannot be performed on matrix with shape {}" ...
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Zero pads along the 0th dimension to make sure the utterance array x is of length to_length.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utils.py#L58-L69
13,855
persephone-tools/persephone
persephone/utils.py
load_batch_x
def load_batch_x(path_batch, flatten = False, time_major = False): """ Loads a batch of input features given a list of paths to numpy arrays in that batch.""" utterances = [np.load(str(path)) for path in path_batch] utter_lens = [utterance.shape[0] for utterance in utt...
python
def load_batch_x(path_batch, flatten = False, time_major = False): """ Loads a batch of input features given a list of paths to numpy arrays in that batch.""" utterances = [np.load(str(path)) for path in path_batch] utter_lens = [utterance.shape[0] for utterance in utt...
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Loads a batch of input features given a list of paths to numpy arrays in that batch.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utils.py#L88-L104
13,856
persephone-tools/persephone
persephone/utils.py
batch_per
def batch_per(hyps: Sequence[Sequence[T]], refs: Sequence[Sequence[T]]) -> float: """ Calculates the phoneme error rate of a batch.""" macro_per = 0.0 for i in range(len(hyps)): ref = [phn_i for phn_i in refs[i] if phn_i != 0] hyp = [phn_i for phn_i in hyps[i] if phn_i != 0] ...
python
def batch_per(hyps: Sequence[Sequence[T]], refs: Sequence[Sequence[T]]) -> float: """ Calculates the phoneme error rate of a batch.""" macro_per = 0.0 for i in range(len(hyps)): ref = [phn_i for phn_i in refs[i] if phn_i != 0] hyp = [phn_i for phn_i in hyps[i] if phn_i != 0] ...
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Calculates the phoneme error rate of a batch.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utils.py#L106-L115
13,857
persephone-tools/persephone
persephone/utils.py
filter_by_size
def filter_by_size(feat_dir: Path, prefixes: List[str], feat_type: str, max_samples: int) -> List[str]: """ Sorts the files by their length and returns those with less than or equal to max_samples length. Returns the filename prefixes of those files. The main job of the method is to filte...
python
def filter_by_size(feat_dir: Path, prefixes: List[str], feat_type: str, max_samples: int) -> List[str]: """ Sorts the files by their length and returns those with less than or equal to max_samples length. Returns the filename prefixes of those files. The main job of the method is to filte...
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Sorts the files by their length and returns those with less than or equal to max_samples length. Returns the filename prefixes of those files. The main job of the method is to filter, but the sorting may give better efficiency when doing dynamic batching unless it gets shuffled downstream.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utils.py#L141-L154
13,858
persephone-tools/persephone
persephone/utils.py
wav_length
def wav_length(fn: str) -> float: """ Returns the length of the WAV file in seconds.""" args = [config.SOX_PATH, fn, "-n", "stat"] p = subprocess.Popen( args, stdin=PIPE, stdout=PIPE, stderr=PIPE) length_line = str(p.communicate()[1]).split("\\n")[1].split() print(length_line) assert le...
python
def wav_length(fn: str) -> float: """ Returns the length of the WAV file in seconds.""" args = [config.SOX_PATH, fn, "-n", "stat"] p = subprocess.Popen( args, stdin=PIPE, stdout=PIPE, stderr=PIPE) length_line = str(p.communicate()[1]).split("\\n")[1].split() print(length_line) assert le...
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Returns the length of the WAV file in seconds.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/utils.py#L170-L179
13,859
persephone-tools/persephone
persephone/datasets/bkw.py
pull_en_words
def pull_en_words() -> None: """ Fetches a repository containing English words. """ ENGLISH_WORDS_URL = "https://github.com/dwyl/english-words.git" en_words_path = Path(config.EN_WORDS_PATH) if not en_words_path.is_file(): subprocess.run(["git", "clone", ENGLISH_WORDS_UR...
python
def pull_en_words() -> None: """ Fetches a repository containing English words. """ ENGLISH_WORDS_URL = "https://github.com/dwyl/english-words.git" en_words_path = Path(config.EN_WORDS_PATH) if not en_words_path.is_file(): subprocess.run(["git", "clone", ENGLISH_WORDS_UR...
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Fetches a repository containing English words.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/bkw.py#L27-L34
13,860
persephone-tools/persephone
persephone/datasets/bkw.py
get_en_words
def get_en_words() -> Set[str]: """ Returns a list of English words which can be used to filter out code-switched sentences. """ pull_en_words() with open(config.EN_WORDS_PATH) as words_f: raw_words = words_f.readlines() en_words = set([word.strip().lower() for word in raw_words]) ...
python
def get_en_words() -> Set[str]: """ Returns a list of English words which can be used to filter out code-switched sentences. """ pull_en_words() with open(config.EN_WORDS_PATH) as words_f: raw_words = words_f.readlines() en_words = set([word.strip().lower() for word in raw_words]) ...
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Returns a list of English words which can be used to filter out code-switched sentences.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/bkw.py#L36-L69
13,861
persephone-tools/persephone
persephone/datasets/bkw.py
explore_elan_files
def explore_elan_files(elan_paths): """ A function to explore the tiers of ELAN files. """ for elan_path in elan_paths: print(elan_path) eafob = Eaf(elan_path) tier_names = eafob.get_tier_names() for tier in tier_names: print("\t", tier) try: ...
python
def explore_elan_files(elan_paths): """ A function to explore the tiers of ELAN files. """ for elan_path in elan_paths: print(elan_path) eafob = Eaf(elan_path) tier_names = eafob.get_tier_names() for tier in tier_names: print("\t", tier) try: ...
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A function to explore the tiers of ELAN files.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/bkw.py#L73-L90
13,862
persephone-tools/persephone
persephone/preprocess/elan.py
sort_annotations
def sort_annotations(annotations: List[Tuple[int, int, str]] ) -> List[Tuple[int, int, str]]: """ Sorts the annotations by their start_time. """ return sorted(annotations, key=lambda x: x[0])
python
def sort_annotations(annotations: List[Tuple[int, int, str]] ) -> List[Tuple[int, int, str]]: """ Sorts the annotations by their start_time. """ return sorted(annotations, key=lambda x: x[0])
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Sorts the annotations by their start_time.
[ "Sorts", "the", "annotations", "by", "their", "start_time", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/elan.py#L62-L65
13,863
persephone-tools/persephone
persephone/preprocess/elan.py
utterances_from_tier
def utterances_from_tier(eafob: Eaf, tier_name: str) -> List[Utterance]: """ Returns utterances found in the given Eaf object in the given tier.""" try: speaker = eafob.tiers[tier_name][2]["PARTICIPANT"] except KeyError: speaker = None # We don't know the name of the speaker. tier_utte...
python
def utterances_from_tier(eafob: Eaf, tier_name: str) -> List[Utterance]: """ Returns utterances found in the given Eaf object in the given tier.""" try: speaker = eafob.tiers[tier_name][2]["PARTICIPANT"] except KeyError: speaker = None # We don't know the name of the speaker. tier_utte...
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Returns utterances found in the given Eaf object in the given tier.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/elan.py#L68-L91
13,864
persephone-tools/persephone
persephone/preprocess/elan.py
utterances_from_eaf
def utterances_from_eaf(eaf_path: Path, tier_prefixes: Tuple[str, ...]) -> List[Utterance]: """ Extracts utterances in tiers that start with tier_prefixes found in the ELAN .eaf XML file at eaf_path. For example, if xv@Mark is a tier in the eaf file, and tier_prefixes = ["xv"], then utterances from...
python
def utterances_from_eaf(eaf_path: Path, tier_prefixes: Tuple[str, ...]) -> List[Utterance]: """ Extracts utterances in tiers that start with tier_prefixes found in the ELAN .eaf XML file at eaf_path. For example, if xv@Mark is a tier in the eaf file, and tier_prefixes = ["xv"], then utterances from...
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Extracts utterances in tiers that start with tier_prefixes found in the ELAN .eaf XML file at eaf_path. For example, if xv@Mark is a tier in the eaf file, and tier_prefixes = ["xv"], then utterances from that tier will be gathered.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/elan.py#L94-L113
13,865
persephone-tools/persephone
persephone/preprocess/elan.py
utterances_from_dir
def utterances_from_dir(eaf_dir: Path, tier_prefixes: Tuple[str, ...]) -> List[Utterance]: """ Returns the utterances found in ELAN files in a directory. Recursively explores the directory, gathering ELAN files and extracting utterances from them for tiers that start with the specif...
python
def utterances_from_dir(eaf_dir: Path, tier_prefixes: Tuple[str, ...]) -> List[Utterance]: """ Returns the utterances found in ELAN files in a directory. Recursively explores the directory, gathering ELAN files and extracting utterances from them for tiers that start with the specif...
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Returns the utterances found in ELAN files in a directory. Recursively explores the directory, gathering ELAN files and extracting utterances from them for tiers that start with the specified prefixes. Args: eaf_dir: A path to the directory to be searched tier_prefixes: Stings matching the...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/elan.py#L116-L142
13,866
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.load_batch
def load_batch(self, fn_batch): """ Loads a batch with the given prefixes. The prefixes is the full path to the training example minus the extension. """ # TODO Assumes targets are available, which is how its distinct from # utils.load_batch_x(). These functions need to change n...
python
def load_batch(self, fn_batch): """ Loads a batch with the given prefixes. The prefixes is the full path to the training example minus the extension. """ # TODO Assumes targets are available, which is how its distinct from # utils.load_batch_x(). These functions need to change n...
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Loads a batch with the given prefixes. The prefixes is the full path to the training example minus the extension.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L95-L117
13,867
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.train_batch_gen
def train_batch_gen(self) -> Iterator: """ Returns a generator that outputs batches in the training data.""" if len(self.train_fns) == 0: raise PersephoneException("""No training data available; cannot generate training batches.""") # Create b...
python
def train_batch_gen(self) -> Iterator: """ Returns a generator that outputs batches in the training data.""" if len(self.train_fns) == 0: raise PersephoneException("""No training data available; cannot generate training batches.""") # Create b...
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Returns a generator that outputs batches in the training data.
[ "Returns", "a", "generator", "that", "outputs", "batches", "in", "the", "training", "data", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L125-L144
13,868
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.valid_batch
def valid_batch(self): """ Returns a single batch with all the validation cases.""" valid_fns = list(zip(*self.corpus.get_valid_fns())) return self.load_batch(valid_fns)
python
def valid_batch(self): """ Returns a single batch with all the validation cases.""" valid_fns = list(zip(*self.corpus.get_valid_fns())) return self.load_batch(valid_fns)
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Returns a single batch with all the validation cases.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L146-L150
13,869
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.untranscribed_batch_gen
def untranscribed_batch_gen(self): """ A batch generator for all the untranscribed data. """ feat_fns = self.corpus.get_untranscribed_fns() fn_batches = self.make_batches(feat_fns) for fn_batch in fn_batches: batch_inputs, batch_inputs_lens = utils.load_batch_x(fn_batch, ...
python
def untranscribed_batch_gen(self): """ A batch generator for all the untranscribed data. """ feat_fns = self.corpus.get_untranscribed_fns() fn_batches = self.make_batches(feat_fns) for fn_batch in fn_batches: batch_inputs, batch_inputs_lens = utils.load_batch_x(fn_batch, ...
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A batch generator for all the untranscribed data.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L158-L167
13,870
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.human_readable_hyp_ref
def human_readable_hyp_ref(self, dense_decoded, dense_y): """ Returns a human readable version of the hypothesis for manual inspection, along with the reference. """ hyps = [] refs = [] for i in range(len(dense_decoded)): ref = [phn_i for phn_i in dense_y[i] ...
python
def human_readable_hyp_ref(self, dense_decoded, dense_y): """ Returns a human readable version of the hypothesis for manual inspection, along with the reference. """ hyps = [] refs = [] for i in range(len(dense_decoded)): ref = [phn_i for phn_i in dense_y[i] ...
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Returns a human readable version of the hypothesis for manual inspection, along with the reference.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L169-L184
13,871
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.human_readable
def human_readable(self, dense_repr: Sequence[Sequence[int]]) -> List[List[str]]: """ Returns a human readable version of a dense representation of either or reference to facilitate simple manual inspection. """ transcripts = [] for dense_r in dense_repr: non_empty_p...
python
def human_readable(self, dense_repr: Sequence[Sequence[int]]) -> List[List[str]]: """ Returns a human readable version of a dense representation of either or reference to facilitate simple manual inspection. """ transcripts = [] for dense_r in dense_repr: non_empty_p...
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Returns a human readable version of a dense representation of either or reference to facilitate simple manual inspection.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L186-L197
13,872
persephone-tools/persephone
persephone/corpus_reader.py
CorpusReader.calc_time
def calc_time(self) -> None: """ Prints statistics about the the total duration of recordings in the corpus. """ def get_number_of_frames(feat_fns): """ fns: A list of numpy files which contain a number of feature frames. """ total = 0 ...
python
def calc_time(self) -> None: """ Prints statistics about the the total duration of recordings in the corpus. """ def get_number_of_frames(feat_fns): """ fns: A list of numpy files which contain a number of feature frames. """ total = 0 ...
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Prints statistics about the the total duration of recordings in the corpus.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/corpus_reader.py#L205-L241
13,873
persephone-tools/persephone
persephone/rnn_ctc.py
lstm_cell
def lstm_cell(hidden_size): """ Wrapper function to create an LSTM cell. """ return tf.contrib.rnn.LSTMCell( hidden_size, use_peepholes=True, state_is_tuple=True)
python
def lstm_cell(hidden_size): """ Wrapper function to create an LSTM cell. """ return tf.contrib.rnn.LSTMCell( hidden_size, use_peepholes=True, state_is_tuple=True)
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Wrapper function to create an LSTM cell.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/rnn_ctc.py#L12-L16
13,874
persephone-tools/persephone
persephone/rnn_ctc.py
Model.write_desc
def write_desc(self) -> None: """ Writes a description of the model to the exp_dir. """ path = os.path.join(self.exp_dir, "model_description.txt") with open(path, "w") as desc_f: for key, val in self.__dict__.items(): print("%s=%s" % (key, val), file=desc_f) ...
python
def write_desc(self) -> None: """ Writes a description of the model to the exp_dir. """ path = os.path.join(self.exp_dir, "model_description.txt") with open(path, "w") as desc_f: for key, val in self.__dict__.items(): print("%s=%s" % (key, val), file=desc_f) ...
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Writes a description of the model to the exp_dir.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/rnn_ctc.py#L21-L58
13,875
persephone-tools/persephone
persephone/preprocess/feat_extract.py
empty_wav
def empty_wav(wav_path: Union[Path, str]) -> bool: """Check if a wav contains data""" with wave.open(str(wav_path), 'rb') as wav_f: return wav_f.getnframes() == 0
python
def empty_wav(wav_path: Union[Path, str]) -> bool: """Check if a wav contains data""" with wave.open(str(wav_path), 'rb') as wav_f: return wav_f.getnframes() == 0
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Check if a wav contains data
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L19-L22
13,876
persephone-tools/persephone
persephone/preprocess/feat_extract.py
extract_energy
def extract_energy(rate, sig): """ Extracts the energy of frames. """ mfcc = python_speech_features.mfcc(sig, rate, appendEnergy=True) energy_row_vec = mfcc[:, 0] energy_col_vec = energy_row_vec[:, np.newaxis] return energy_col_vec
python
def extract_energy(rate, sig): """ Extracts the energy of frames. """ mfcc = python_speech_features.mfcc(sig, rate, appendEnergy=True) energy_row_vec = mfcc[:, 0] energy_col_vec = energy_row_vec[:, np.newaxis] return energy_col_vec
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Extracts the energy of frames.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L25-L31
13,877
persephone-tools/persephone
persephone/preprocess/feat_extract.py
fbank
def fbank(wav_path, flat=True): """ Currently grabs log Mel filterbank, deltas and double deltas.""" (rate, sig) = wav.read(wav_path) if len(sig) == 0: logger.warning("Empty wav: {}".format(wav_path)) fbank_feat = python_speech_features.logfbank(sig, rate, nfilt=40) energy = extract_energy(...
python
def fbank(wav_path, flat=True): """ Currently grabs log Mel filterbank, deltas and double deltas.""" (rate, sig) = wav.read(wav_path) if len(sig) == 0: logger.warning("Empty wav: {}".format(wav_path)) fbank_feat = python_speech_features.logfbank(sig, rate, nfilt=40) energy = extract_energy(...
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Currently grabs log Mel filterbank, deltas and double deltas.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L33-L56
13,878
persephone-tools/persephone
persephone/preprocess/feat_extract.py
mfcc
def mfcc(wav_path): """ Grabs MFCC features with energy and derivates. """ (rate, sig) = wav.read(wav_path) feat = python_speech_features.mfcc(sig, rate, appendEnergy=True) delta_feat = python_speech_features.delta(feat, 2) all_feats = [feat, delta_feat] all_feats = np.array(all_feats) # Ma...
python
def mfcc(wav_path): """ Grabs MFCC features with energy and derivates. """ (rate, sig) = wav.read(wav_path) feat = python_speech_features.mfcc(sig, rate, appendEnergy=True) delta_feat = python_speech_features.delta(feat, 2) all_feats = [feat, delta_feat] all_feats = np.array(all_feats) # Ma...
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Grabs MFCC features with energy and derivates.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L58-L71
13,879
persephone-tools/persephone
persephone/preprocess/feat_extract.py
from_dir
def from_dir(dirpath: Path, feat_type: str) -> None: """ Performs feature extraction from the WAV files in a directory. Args: dirpath: A `Path` to the directory where the WAV files reside. feat_type: The type of features that are being used. """ logger.info("Extracting features from di...
python
def from_dir(dirpath: Path, feat_type: str) -> None: """ Performs feature extraction from the WAV files in a directory. Args: dirpath: A `Path` to the directory where the WAV files reside. feat_type: The type of features that are being used. """ logger.info("Extracting features from di...
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Performs feature extraction from the WAV files in a directory. Args: dirpath: A `Path` to the directory where the WAV files reside. feat_type: The type of features that are being used.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L117-L173
13,880
persephone-tools/persephone
persephone/preprocess/feat_extract.py
convert_wav
def convert_wav(org_wav_fn: Path, tgt_wav_fn: Path) -> None: """ Converts the wav into a 16bit mono 16000Hz wav. Args: org_wav_fn: A `Path` to the original wave file tgt_wav_fn: The `Path` to output the processed wave file """ if not org_wav_fn.exists(): raise FileNo...
python
def convert_wav(org_wav_fn: Path, tgt_wav_fn: Path) -> None: """ Converts the wav into a 16bit mono 16000Hz wav. Args: org_wav_fn: A `Path` to the original wave file tgt_wav_fn: The `Path` to output the processed wave file """ if not org_wav_fn.exists(): raise FileNo...
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Converts the wav into a 16bit mono 16000Hz wav. Args: org_wav_fn: A `Path` to the original wave file tgt_wav_fn: The `Path` to output the processed wave file
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L175-L186
13,881
persephone-tools/persephone
persephone/preprocess/feat_extract.py
kaldi_pitch
def kaldi_pitch(wav_dir: str, feat_dir: str) -> None: """ Extract Kaldi pitch features. Assumes 16k mono wav files.""" logger.debug("Make wav.scp and pitch.scp files") # Make wav.scp and pitch.scp files prefixes = [] for fn in os.listdir(wav_dir): prefix, ext = os.path.splitext(fn) ...
python
def kaldi_pitch(wav_dir: str, feat_dir: str) -> None: """ Extract Kaldi pitch features. Assumes 16k mono wav files.""" logger.debug("Make wav.scp and pitch.scp files") # Make wav.scp and pitch.scp files prefixes = [] for fn in os.listdir(wav_dir): prefix, ext = os.path.splitext(fn) ...
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Extract Kaldi pitch features. Assumes 16k mono wav files.
[ "Extract", "Kaldi", "pitch", "features", ".", "Assumes", "16k", "mono", "wav", "files", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/feat_extract.py#L188-L230
13,882
persephone-tools/persephone
persephone/experiment.py
get_exp_dir_num
def get_exp_dir_num(parent_dir: str) -> int: """ Gets the number of the current experiment directory.""" return max([int(fn.split(".")[0]) for fn in os.listdir(parent_dir) if fn.split(".")[0].isdigit()] + [-1])
python
def get_exp_dir_num(parent_dir: str) -> int: """ Gets the number of the current experiment directory.""" return max([int(fn.split(".")[0]) for fn in os.listdir(parent_dir) if fn.split(".")[0].isdigit()] + [-1])
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Gets the number of the current experiment directory.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/experiment.py#L18-L22
13,883
persephone-tools/persephone
persephone/experiment.py
transcribe
def transcribe(model_path, corpus): """ Applies a trained model to untranscribed data in a Corpus. """ exp_dir = prep_exp_dir() model = get_simple_model(exp_dir, corpus) model.transcribe(model_path)
python
def transcribe(model_path, corpus): """ Applies a trained model to untranscribed data in a Corpus. """ exp_dir = prep_exp_dir() model = get_simple_model(exp_dir, corpus) model.transcribe(model_path)
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Applies a trained model to untranscribed data in a Corpus.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/experiment.py#L106-L111
13,884
persephone-tools/persephone
persephone/preprocess/wav.py
trim_wav_ms
def trim_wav_ms(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Extracts part of a WAV File. First attempts to call sox. If sox is unavailable, it backs off to pydub+ffmpeg. Args: in_path: A path to the source file to extract a portion of out...
python
def trim_wav_ms(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Extracts part of a WAV File. First attempts to call sox. If sox is unavailable, it backs off to pydub+ffmpeg. Args: in_path: A path to the source file to extract a portion of out...
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Extracts part of a WAV File. First attempts to call sox. If sox is unavailable, it backs off to pydub+ffmpeg. Args: in_path: A path to the source file to extract a portion of out_path: A path describing the to-be-created WAV file. start_time: The point in the source WAV file at whi...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/wav.py#L18-L43
13,885
persephone-tools/persephone
persephone/preprocess/wav.py
trim_wav_pydub
def trim_wav_pydub(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Crops the wav file. """ logger.info( "Using pydub/ffmpeg to create {} from {}".format(out_path, in_path) + " using a start_time of {} and an end_time of {}".format(start_time, ...
python
def trim_wav_pydub(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Crops the wav file. """ logger.info( "Using pydub/ffmpeg to create {} from {}".format(out_path, in_path) + " using a start_time of {} and an end_time of {}".format(start_time, ...
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Crops the wav file.
[ "Crops", "the", "wav", "file", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/wav.py#L45-L70
13,886
persephone-tools/persephone
persephone/preprocess/wav.py
trim_wav_sox
def trim_wav_sox(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Crops the wav file at in_fn so that the audio between start_time and end_time is output to out_fn. Measured in milliseconds. """ if out_path.is_file(): logger.info("Output path %s alrea...
python
def trim_wav_sox(in_path: Path, out_path: Path, start_time: int, end_time: int) -> None: """ Crops the wav file at in_fn so that the audio between start_time and end_time is output to out_fn. Measured in milliseconds. """ if out_path.is_file(): logger.info("Output path %s alrea...
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Crops the wav file at in_fn so that the audio between start_time and end_time is output to out_fn. Measured in milliseconds.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/wav.py#L72-L88
13,887
persephone-tools/persephone
persephone/preprocess/wav.py
extract_wavs
def extract_wavs(utterances: List[Utterance], tgt_dir: Path, lazy: bool) -> None: """ Extracts WAVs from the media files associated with a list of Utterance objects and stores it in a target directory. Args: utterances: A list of Utterance objects, which include information ...
python
def extract_wavs(utterances: List[Utterance], tgt_dir: Path, lazy: bool) -> None: """ Extracts WAVs from the media files associated with a list of Utterance objects and stores it in a target directory. Args: utterances: A list of Utterance objects, which include information ...
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Extracts WAVs from the media files associated with a list of Utterance objects and stores it in a target directory. Args: utterances: A list of Utterance objects, which include information about the source media file, and the offset of the utterance in the media_file. tg...
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/wav.py#L90-L114
13,888
persephone-tools/persephone
persephone/results.py
filter_labels
def filter_labels(sent: Sequence[str], labels: Set[str] = None) -> List[str]: """ Returns only the tokens present in the sentence that are in labels.""" if labels: return [tok for tok in sent if tok in labels] return list(sent)
python
def filter_labels(sent: Sequence[str], labels: Set[str] = None) -> List[str]: """ Returns only the tokens present in the sentence that are in labels.""" if labels: return [tok for tok in sent if tok in labels] return list(sent)
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Returns only the tokens present in the sentence that are in labels.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/results.py#L11-L16
13,889
persephone-tools/persephone
persephone/results.py
filtered_error_rate
def filtered_error_rate(hyps_path: Union[str, Path], refs_path: Union[str, Path], labels: Set[str]) -> float: """ Returns the error rate of hypotheses in hyps_path against references in refs_path after filtering only for labels in labels. """ if isinstance(hyps_path, Path): hyps_path = str(hyps_path...
python
def filtered_error_rate(hyps_path: Union[str, Path], refs_path: Union[str, Path], labels: Set[str]) -> float: """ Returns the error rate of hypotheses in hyps_path against references in refs_path after filtering only for labels in labels. """ if isinstance(hyps_path, Path): hyps_path = str(hyps_path...
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Returns the error rate of hypotheses in hyps_path against references in refs_path after filtering only for labels in labels.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/results.py#L18-L42
13,890
persephone-tools/persephone
persephone/results.py
fmt_latex_output
def fmt_latex_output(hyps: Sequence[Sequence[str]], refs: Sequence[Sequence[str]], prefixes: Sequence[str], out_fn: Path, ) -> None: """ Output the hypotheses and references to a LaTeX source file for pretty printing. """ ...
python
def fmt_latex_output(hyps: Sequence[Sequence[str]], refs: Sequence[Sequence[str]], prefixes: Sequence[str], out_fn: Path, ) -> None: """ Output the hypotheses and references to a LaTeX source file for pretty printing. """ ...
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Output the hypotheses and references to a LaTeX source file for pretty printing.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/results.py#L57-L96
13,891
persephone-tools/persephone
persephone/results.py
fmt_confusion_matrix
def fmt_confusion_matrix(hyps: Sequence[Sequence[str]], refs: Sequence[Sequence[str]], label_set: Set[str] = None, max_width: int = 25) -> str: """ Formats a confusion matrix over substitutions, ignoring insertions and deletions. """ ...
python
def fmt_confusion_matrix(hyps: Sequence[Sequence[str]], refs: Sequence[Sequence[str]], label_set: Set[str] = None, max_width: int = 25) -> str: """ Formats a confusion matrix over substitutions, ignoring insertions and deletions. """ ...
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Formats a confusion matrix over substitutions, ignoring insertions and deletions.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/results.py#L132-L167
13,892
persephone-tools/persephone
persephone/results.py
fmt_latex_untranscribed
def fmt_latex_untranscribed(hyps: Sequence[Sequence[str]], prefixes: Sequence[str], out_fn: Path) -> None: """ Formats automatic hypotheses that have not previously been transcribed in LaTeX. """ hyps_prefixes = list(zip(hyps, prefixes)) def utter...
python
def fmt_latex_untranscribed(hyps: Sequence[Sequence[str]], prefixes: Sequence[str], out_fn: Path) -> None: """ Formats automatic hypotheses that have not previously been transcribed in LaTeX. """ hyps_prefixes = list(zip(hyps, prefixes)) def utter...
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Formats automatic hypotheses that have not previously been transcribed in LaTeX.
[ "Formats", "automatic", "hypotheses", "that", "have", "not", "previously", "been", "transcribed", "in", "LaTeX", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/results.py#L169-L192
13,893
persephone-tools/persephone
persephone/preprocess/labels.py
segment_into_chars
def segment_into_chars(utterance: str) -> str: """ Segments an utterance into space delimited characters. """ if not isinstance(utterance, str): raise TypeError("Input type must be a string. Got {}.".format(type(utterance))) utterance.strip() utterance = utterance.replace(" ", "") return "...
python
def segment_into_chars(utterance: str) -> str: """ Segments an utterance into space delimited characters. """ if not isinstance(utterance, str): raise TypeError("Input type must be a string. Got {}.".format(type(utterance))) utterance.strip() utterance = utterance.replace(" ", "") return "...
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Segments an utterance into space delimited characters.
[ "Segments", "an", "utterance", "into", "space", "delimited", "characters", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/labels.py#L28-L36
13,894
persephone-tools/persephone
persephone/preprocess/labels.py
make_indices_to_labels
def make_indices_to_labels(labels: Set[str]) -> Dict[int, str]: """ Creates a mapping from indices to labels. """ return {index: label for index, label in enumerate(["pad"] + sorted(list(labels)))}
python
def make_indices_to_labels(labels: Set[str]) -> Dict[int, str]: """ Creates a mapping from indices to labels. """ return {index: label for index, label in enumerate(["pad"] + sorted(list(labels)))}
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Creates a mapping from indices to labels.
[ "Creates", "a", "mapping", "from", "indices", "to", "labels", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/preprocess/labels.py#L81-L85
13,895
persephone-tools/persephone
persephone/datasets/na.py
preprocess_french
def preprocess_french(trans, fr_nlp, remove_brackets_content=True): """ Takes a list of sentences in french and preprocesses them.""" if remove_brackets_content: trans = pangloss.remove_content_in_brackets(trans, "[]") # Not sure why I have to split and rejoin, but that fixes a Spacy token # er...
python
def preprocess_french(trans, fr_nlp, remove_brackets_content=True): """ Takes a list of sentences in french and preprocesses them.""" if remove_brackets_content: trans = pangloss.remove_content_in_brackets(trans, "[]") # Not sure why I have to split and rejoin, but that fixes a Spacy token # er...
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Takes a list of sentences in french and preprocesses them.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L209-L220
13,896
persephone-tools/persephone
persephone/datasets/na.py
trim_wavs
def trim_wavs(org_wav_dir=ORG_WAV_DIR, tgt_wav_dir=TGT_WAV_DIR, org_xml_dir=ORG_XML_DIR): """ Extracts sentence-level transcriptions, translations and wavs from the Na Pangloss XML and WAV files. But otherwise doesn't preprocess them.""" logging.info("Trimming wavs...") if ...
python
def trim_wavs(org_wav_dir=ORG_WAV_DIR, tgt_wav_dir=TGT_WAV_DIR, org_xml_dir=ORG_XML_DIR): """ Extracts sentence-level transcriptions, translations and wavs from the Na Pangloss XML and WAV files. But otherwise doesn't preprocess them.""" logging.info("Trimming wavs...") if ...
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Extracts sentence-level transcriptions, translations and wavs from the Na Pangloss XML and WAV files. But otherwise doesn't preprocess them.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L222-L265
13,897
persephone-tools/persephone
persephone/datasets/na.py
prepare_labels
def prepare_labels(label_type, org_xml_dir=ORG_XML_DIR, label_dir=LABEL_DIR): """ Prepare the neural network output targets.""" if not os.path.exists(os.path.join(label_dir, "TEXT")): os.makedirs(os.path.join(label_dir, "TEXT")) if not os.path.exists(os.path.join(label_dir, "WORDLIST")): os...
python
def prepare_labels(label_type, org_xml_dir=ORG_XML_DIR, label_dir=LABEL_DIR): """ Prepare the neural network output targets.""" if not os.path.exists(os.path.join(label_dir, "TEXT")): os.makedirs(os.path.join(label_dir, "TEXT")) if not os.path.exists(os.path.join(label_dir, "WORDLIST")): os...
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Prepare the neural network output targets.
[ "Prepare", "the", "neural", "network", "output", "targets", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L267-L289
13,898
persephone-tools/persephone
persephone/datasets/na.py
prepare_untran
def prepare_untran(feat_type, tgt_dir, untran_dir): """ Preprocesses untranscribed audio.""" org_dir = str(untran_dir) wav_dir = os.path.join(str(tgt_dir), "wav", "untranscribed") feat_dir = os.path.join(str(tgt_dir), "feat", "untranscribed") if not os.path.isdir(wav_dir): os.makedirs(wav_di...
python
def prepare_untran(feat_type, tgt_dir, untran_dir): """ Preprocesses untranscribed audio.""" org_dir = str(untran_dir) wav_dir = os.path.join(str(tgt_dir), "wav", "untranscribed") feat_dir = os.path.join(str(tgt_dir), "feat", "untranscribed") if not os.path.isdir(wav_dir): os.makedirs(wav_di...
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Preprocesses untranscribed audio.
[ "Preprocesses", "untranscribed", "audio", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L292-L337
13,899
persephone-tools/persephone
persephone/datasets/na.py
prepare_feats
def prepare_feats(feat_type, org_wav_dir=ORG_WAV_DIR, feat_dir=FEAT_DIR, tgt_wav_dir=TGT_WAV_DIR, org_xml_dir=ORG_XML_DIR, label_dir=LABEL_DIR): """ Prepare the input features.""" if not os.path.isdir(TGT_DIR): os.makedirs(TGT_DIR) if not os.path.isdir(FEAT_DIR): os.maked...
python
def prepare_feats(feat_type, org_wav_dir=ORG_WAV_DIR, feat_dir=FEAT_DIR, tgt_wav_dir=TGT_WAV_DIR, org_xml_dir=ORG_XML_DIR, label_dir=LABEL_DIR): """ Prepare the input features.""" if not os.path.isdir(TGT_DIR): os.makedirs(TGT_DIR) if not os.path.isdir(FEAT_DIR): os.maked...
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Prepare the input features.
[ "Prepare", "the", "input", "features", "." ]
f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L340-L402