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13,900
persephone-tools/persephone
persephone/datasets/na.py
get_story_prefixes
def get_story_prefixes(label_type, label_dir=LABEL_DIR): """ Gets the Na text prefixes. """ prefixes = [prefix for prefix in os.listdir(os.path.join(label_dir, "TEXT")) if prefix.endswith(".%s" % label_type)] prefixes = [os.path.splitext(os.path.join("TEXT", prefix))[0] for p...
python
def get_story_prefixes(label_type, label_dir=LABEL_DIR): """ Gets the Na text prefixes. """ prefixes = [prefix for prefix in os.listdir(os.path.join(label_dir, "TEXT")) if prefix.endswith(".%s" % label_type)] prefixes = [os.path.splitext(os.path.join("TEXT", prefix))[0] for p...
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Gets the Na text prefixes.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L404-L410
13,901
persephone-tools/persephone
persephone/datasets/na.py
get_stories
def get_stories(label_type): """ Returns a list of the stories in the Na corpus. """ prefixes = get_story_prefixes(label_type) texts = list(set([prefix.split(".")[0].split("/")[1] for prefix in prefixes])) return texts
python
def get_stories(label_type): """ Returns a list of the stories in the Na corpus. """ prefixes = get_story_prefixes(label_type) texts = list(set([prefix.split(".")[0].split("/")[1] for prefix in prefixes])) return texts
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Returns a list of the stories in the Na corpus.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L456-L461
13,902
persephone-tools/persephone
persephone/datasets/na.py
Corpus.make_data_splits
def make_data_splits(self, max_samples, valid_story=None, test_story=None): """Split data into train, valid and test groups""" # TODO Make this also work with wordlists. if valid_story or test_story: if not (valid_story and test_story): raise PersephoneException( ...
python
def make_data_splits(self, max_samples, valid_story=None, test_story=None): """Split data into train, valid and test groups""" # TODO Make this also work with wordlists. if valid_story or test_story: if not (valid_story and test_story): raise PersephoneException( ...
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Split data into train, valid and test groups
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L537-L558
13,903
persephone-tools/persephone
persephone/datasets/na.py
Corpus.output_story_prefixes
def output_story_prefixes(self): """ Writes the set of prefixes to a file this is useful for pretty printing in results.latex_output. """ if not self.test_story: raise NotImplementedError( "I want to write the prefixes to a file" "called <test_story>_...
python
def output_story_prefixes(self): """ Writes the set of prefixes to a file this is useful for pretty printing in results.latex_output. """ if not self.test_story: raise NotImplementedError( "I want to write the prefixes to a file" "called <test_story>_...
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Writes the set of prefixes to a file this is useful for pretty printing in results.latex_output.
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f94c63e4d5fe719fb1deba449b177bb299d225fb
https://github.com/persephone-tools/persephone/blob/f94c63e4d5fe719fb1deba449b177bb299d225fb/persephone/datasets/na.py#L560-L572
13,904
KxSystems/pyq
setup.py
add_data_file
def add_data_file(data_files, target, source): """Add an entry to data_files""" for t, f in data_files: if t == target: break else: data_files.append((target, [])) f = data_files[-1][1] if source not in f: f.append(source)
python
def add_data_file(data_files, target, source): """Add an entry to data_files""" for t, f in data_files: if t == target: break else: data_files.append((target, [])) f = data_files[-1][1] if source not in f: f.append(source)
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Add an entry to data_files
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/setup.py#L145-L154
13,905
KxSystems/pyq
setup.py
get_q_home
def get_q_home(env): """Derive q home from the environment""" q_home = env.get('QHOME') if q_home: return q_home for v in ['VIRTUAL_ENV', 'HOME']: prefix = env.get(v) if prefix: q_home = os.path.join(prefix, 'q') if os.path.isdir(q_home): r...
python
def get_q_home(env): """Derive q home from the environment""" q_home = env.get('QHOME') if q_home: return q_home for v in ['VIRTUAL_ENV', 'HOME']: prefix = env.get(v) if prefix: q_home = os.path.join(prefix, 'q') if os.path.isdir(q_home): r...
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Derive q home from the environment
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/setup.py#L185-L200
13,906
KxSystems/pyq
setup.py
get_q_version
def get_q_version(q_home): """Return version of q installed at q_home""" with open(os.path.join(q_home, 'q.k')) as f: for line in f: if line.startswith('k:'): return line[2:5] return '2.2'
python
def get_q_version(q_home): """Return version of q installed at q_home""" with open(os.path.join(q_home, 'q.k')) as f: for line in f: if line.startswith('k:'): return line[2:5] return '2.2'
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Return version of q installed at q_home
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/setup.py#L230-L236
13,907
KxSystems/pyq
src/pyq/cmd.py
Cmd.precmd
def precmd(self, line): """Support for help""" if line.startswith('help'): if not q("`help in key`.q"): try: q("\\l help.q") except kerr: return '-1"no help available - install help.q"' if line == 'help': ...
python
def precmd(self, line): """Support for help""" if line.startswith('help'): if not q("`help in key`.q"): try: q("\\l help.q") except kerr: return '-1"no help available - install help.q"' if line == 'help': ...
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Support for help
[ "Support", "for", "help" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/cmd.py#L35-L45
13,908
KxSystems/pyq
src/pyq/cmd.py
Cmd.onecmd
def onecmd(self, line): """Interpret the line""" if line == '\\': return True elif line == 'EOF': print('\r', end='') return True else: try: v = q(line) except kerr as e: print("'%s" % e.args[0]) ...
python
def onecmd(self, line): """Interpret the line""" if line == '\\': return True elif line == 'EOF': print('\r', end='') return True else: try: v = q(line) except kerr as e: print("'%s" % e.args[0]) ...
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Interpret the line
[ "Interpret", "the", "line" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/cmd.py#L47-L62
13,909
KxSystems/pyq
src/pyq/_pt_run.py
run
def run(q_prompt=False): """Run a prompt-toolkit based REPL""" lines, columns = console_size() q(r'\c %d %d' % (lines, columns)) if len(sys.argv) > 1: try: q(r'\l %s' % sys.argv[1]) except kerr as e: print(e) raise SystemExit(1) else: ...
python
def run(q_prompt=False): """Run a prompt-toolkit based REPL""" lines, columns = console_size() q(r'\c %d %d' % (lines, columns)) if len(sys.argv) > 1: try: q(r'\l %s' % sys.argv[1]) except kerr as e: print(e) raise SystemExit(1) else: ...
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Run a prompt-toolkit based REPL
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/_pt_run.py#L32-L46
13,910
KxSystems/pyq
src/pyq/_n.py
get_unit
def get_unit(a): """Extract the time unit from array's dtype""" typestr = a.dtype.str i = typestr.find('[') if i == -1: raise TypeError("Expected a datetime64 array, not %s", a.dtype) return typestr[i + 1: -1]
python
def get_unit(a): """Extract the time unit from array's dtype""" typestr = a.dtype.str i = typestr.find('[') if i == -1: raise TypeError("Expected a datetime64 array, not %s", a.dtype) return typestr[i + 1: -1]
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Extract the time unit from array's dtype
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/_n.py#L50-L56
13,911
KxSystems/pyq
src/pyq/_n.py
k2a
def k2a(a, x): """Rescale data from a K object x to array a. """ func, scale = None, 1 t = abs(x._t) # timestamp (12), month (13), date (14) or datetime (15) if 12 <= t <= 15: unit = get_unit(a) attr, shift, func, scale = _UNIT[unit] a[:] = getattr(x, attr).data ...
python
def k2a(a, x): """Rescale data from a K object x to array a. """ func, scale = None, 1 t = abs(x._t) # timestamp (12), month (13), date (14) or datetime (15) if 12 <= t <= 15: unit = get_unit(a) attr, shift, func, scale = _UNIT[unit] a[:] = getattr(x, attr).data ...
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Rescale data from a K object x to array a.
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/_n.py#L118-L145
13,912
KxSystems/pyq
src/pyq/__init__.py
K.show
def show(self, start=0, geometry=None, output=None): """pretty-print data to the console (similar to q.show, but uses python stdout by default) >>> x = q('([k:`x`y`z]a:1 2 3;b:10 20 30)') >>> x.show() # doctest: +NORMALIZE_WHITESPACE k| a b -| ---- x| 1 10 ...
python
def show(self, start=0, geometry=None, output=None): """pretty-print data to the console (similar to q.show, but uses python stdout by default) >>> x = q('([k:`x`y`z]a:1 2 3;b:10 20 30)') >>> x.show() # doctest: +NORMALIZE_WHITESPACE k| a b -| ---- x| 1 10 ...
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pretty-print data to the console (similar to q.show, but uses python stdout by default) >>> x = q('([k:`x`y`z]a:1 2 3;b:10 20 30)') >>> x.show() # doctest: +NORMALIZE_WHITESPACE k| a b -| ---- x| 1 10 y| 2 20 z| 3 30 the first optional argument...
[ "pretty", "-", "print", "data", "to", "the", "console" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/__init__.py#L377-L435
13,913
KxSystems/pyq
src/pyq/__init__.py
K.select
def select(self, columns=(), by=(), where=(), **kwds): """select from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.select('a', where='b > 20').show() a - 3 """ return self._seu('select', columns, by, where, kwds)
python
def select(self, columns=(), by=(), where=(), **kwds): """select from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.select('a', where='b > 20').show() a - 3 """ return self._seu('select', columns, by, where, kwds)
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select from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.select('a', where='b > 20').show() a - 3
[ "select", "from", "self" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/__init__.py#L465-L474
13,914
KxSystems/pyq
src/pyq/__init__.py
K.exec_
def exec_(self, columns=(), by=(), where=(), **kwds): """exec from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.exec_('a', where='b > 10').show() 2 3 """ return self._seu('exec', columns, by, where, kwds)
python
def exec_(self, columns=(), by=(), where=(), **kwds): """exec from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.exec_('a', where='b > 10').show() 2 3 """ return self._seu('exec', columns, by, where, kwds)
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exec from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.exec_('a', where='b > 10').show() 2 3
[ "exec", "from", "self" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/__init__.py#L476-L483
13,915
KxSystems/pyq
src/pyq/__init__.py
K.update
def update(self, columns=(), by=(), where=(), **kwds): """update from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.update('a*2', ... where='b > 20').show() # doctest: +NORMALIZE_WHITESPACE a b ---- 1 10 2 20 6 30 """ r...
python
def update(self, columns=(), by=(), where=(), **kwds): """update from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.update('a*2', ... where='b > 20').show() # doctest: +NORMALIZE_WHITESPACE a b ---- 1 10 2 20 6 30 """ r...
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update from self >>> t = q('([]a:1 2 3; b:10 20 30)') >>> t.update('a*2', ... where='b > 20').show() # doctest: +NORMALIZE_WHITESPACE a b ---- 1 10 2 20 6 30
[ "update", "from", "self" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/__init__.py#L485-L497
13,916
KxSystems/pyq
src/pyq/__init__.py
K.dict
def dict(cls, *args, **kwds): """Construct a q dictionary K.dict() -> new empty q dictionary (q('()!()') K.dict(mapping) -> new dictionary initialized from a mapping object's (key, value) pairs K.dict(iterable) -> new dictionary initialized from an iterable yield...
python
def dict(cls, *args, **kwds): """Construct a q dictionary K.dict() -> new empty q dictionary (q('()!()') K.dict(mapping) -> new dictionary initialized from a mapping object's (key, value) pairs K.dict(iterable) -> new dictionary initialized from an iterable yield...
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Construct a q dictionary K.dict() -> new empty q dictionary (q('()!()') K.dict(mapping) -> new dictionary initialized from a mapping object's (key, value) pairs K.dict(iterable) -> new dictionary initialized from an iterable yielding (key, value) pairs K.dict(**k...
[ "Construct", "a", "q", "dictionary" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/__init__.py#L558-L595
13,917
KxSystems/pyq
src/pyq/magic.py
logical_lines
def logical_lines(lines): """Merge lines into chunks according to q rules""" if isinstance(lines, string_types): lines = StringIO(lines) buf = [] for line in lines: if buf and not line.startswith(' '): chunk = ''.join(buf).strip() if chunk: yield c...
python
def logical_lines(lines): """Merge lines into chunks according to q rules""" if isinstance(lines, string_types): lines = StringIO(lines) buf = [] for line in lines: if buf and not line.startswith(' '): chunk = ''.join(buf).strip() if chunk: yield c...
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Merge lines into chunks according to q rules
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/magic.py#L23-L38
13,918
KxSystems/pyq
src/pyq/magic.py
q
def q(line, cell=None, _ns=None): """Run q code. Options: -l (dir|script) - pre-load database or script -h host:port - execute on the given host -o var - send output to a variable named var. -i var1,..,varN - input variables -1/-2 - redirect stdout/stderr """ if cell ...
python
def q(line, cell=None, _ns=None): """Run q code. Options: -l (dir|script) - pre-load database or script -h host:port - execute on the given host -o var - send output to a variable named var. -i var1,..,varN - input variables -1/-2 - redirect stdout/stderr """ if cell ...
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Run q code. Options: -l (dir|script) - pre-load database or script -h host:port - execute on the given host -o var - send output to a variable named var. -i var1,..,varN - input variables -1/-2 - redirect stdout/stderr
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/magic.py#L50-L121
13,919
KxSystems/pyq
src/pyq/magic.py
load_ipython_extension
def load_ipython_extension(ipython): """Register %q and %%q magics and pretty display for K objects""" ipython.register_magic_function(q, 'line_cell') fmr = ipython.display_formatter.formatters['text/plain'] fmr.for_type(pyq.K, _q_formatter)
python
def load_ipython_extension(ipython): """Register %q and %%q magics and pretty display for K objects""" ipython.register_magic_function(q, 'line_cell') fmr = ipython.display_formatter.formatters['text/plain'] fmr.for_type(pyq.K, _q_formatter)
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Register %q and %%q magics and pretty display for K objects
[ "Register", "%q", "and", "%%q", "magics", "and", "pretty", "display", "for", "K", "objects" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/magic.py#L129-L133
13,920
KxSystems/pyq
src/pyq/ptk.py
get_prompt_tokens
def get_prompt_tokens(_): """Return a list of tokens for the prompt""" namespace = q(r'\d') if namespace == '.': namespace = '' return [(Token.Generic.Prompt, 'q%s)' % namespace)]
python
def get_prompt_tokens(_): """Return a list of tokens for the prompt""" namespace = q(r'\d') if namespace == '.': namespace = '' return [(Token.Generic.Prompt, 'q%s)' % namespace)]
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Return a list of tokens for the prompt
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ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/ptk.py#L48-L53
13,921
KxSystems/pyq
src/pyq/ptk.py
cmdloop
def cmdloop(self, intro=None): """A Cmd.cmdloop implementation""" style = style_from_pygments(BasicStyle, style_dict) self.preloop() stop = None while not stop: line = prompt(get_prompt_tokens=get_prompt_tokens, lexer=lexer, get_bottom_toolbar_tokens=get_bottom_toolbar_...
python
def cmdloop(self, intro=None): """A Cmd.cmdloop implementation""" style = style_from_pygments(BasicStyle, style_dict) self.preloop() stop = None while not stop: line = prompt(get_prompt_tokens=get_prompt_tokens, lexer=lexer, get_bottom_toolbar_tokens=get_bottom_toolbar_...
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A Cmd.cmdloop implementation
[ "A", "Cmd", ".", "cmdloop", "implementation" ]
ad7b807abde94615a7344aaa930bb01fb1552cc5
https://github.com/KxSystems/pyq/blob/ad7b807abde94615a7344aaa930bb01fb1552cc5/src/pyq/ptk.py#L90-L107
13,922
mapbox/snuggs
snuggs/__init__.py
eval
def eval(source, kwd_dict=None, **kwds): """Evaluate a snuggs expression. Parameters ---------- source : str Expression source. kwd_dict : dict A dict of items that form the evaluation context. Deprecated. kwds : dict A dict of items that form the valuation context. ...
python
def eval(source, kwd_dict=None, **kwds): """Evaluate a snuggs expression. Parameters ---------- source : str Expression source. kwd_dict : dict A dict of items that form the evaluation context. Deprecated. kwds : dict A dict of items that form the valuation context. ...
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Evaluate a snuggs expression. Parameters ---------- source : str Expression source. kwd_dict : dict A dict of items that form the evaluation context. Deprecated. kwds : dict A dict of items that form the valuation context. Returns ------- object
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7517839178accf78ae9624b7186d03b77f837e02
https://github.com/mapbox/snuggs/blob/7517839178accf78ae9624b7186d03b77f837e02/snuggs/__init__.py#L208-L227
13,923
josiahcarlson/parse-crontab
crontab/_crontab.py
CronTab._make_matchers
def _make_matchers(self, crontab): ''' This constructs the full matcher struct. ''' crontab = _aliases.get(crontab, crontab) ct = crontab.split() if len(ct) == 5: ct.insert(0, '0') ct.append('*') elif len(ct) == 6: ct.insert(0, ...
python
def _make_matchers(self, crontab): ''' This constructs the full matcher struct. ''' crontab = _aliases.get(crontab, crontab) ct = crontab.split() if len(ct) == 5: ct.insert(0, '0') ct.append('*') elif len(ct) == 6: ct.insert(0, ...
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This constructs the full matcher struct.
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b2bd254cf14e8c83e502615851b0d4b62f73ab15
https://github.com/josiahcarlson/parse-crontab/blob/b2bd254cf14e8c83e502615851b0d4b62f73ab15/crontab/_crontab.py#L361-L377
13,924
josiahcarlson/parse-crontab
crontab/_crontab.py
CronTab.next
def next(self, now=None, increments=_increments, delta=True, default_utc=WARN_CHANGE): ''' How long to wait in seconds before this crontab entry can next be executed. ''' if default_utc is WARN_CHANGE and (isinstance(now, _number_types) or (now and not now.tzinfo) or now is None)...
python
def next(self, now=None, increments=_increments, delta=True, default_utc=WARN_CHANGE): ''' How long to wait in seconds before this crontab entry can next be executed. ''' if default_utc is WARN_CHANGE and (isinstance(now, _number_types) or (now and not now.tzinfo) or now is None)...
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How long to wait in seconds before this crontab entry can next be executed.
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b2bd254cf14e8c83e502615851b0d4b62f73ab15
https://github.com/josiahcarlson/parse-crontab/blob/b2bd254cf14e8c83e502615851b0d4b62f73ab15/crontab/_crontab.py#L390-L458
13,925
sanand0/xmljson
xmljson/__init__.py
XMLData._tostring
def _tostring(value): '''Convert value to XML compatible string''' if value is True: value = 'true' elif value is False: value = 'false' elif value is None: value = '' return unicode(value)
python
def _tostring(value): '''Convert value to XML compatible string''' if value is True: value = 'true' elif value is False: value = 'false' elif value is None: value = '' return unicode(value)
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Convert value to XML compatible string
[ "Convert", "value", "to", "XML", "compatible", "string" ]
2ecc2065fe7c87b3d282d362289927f13ce7f8b0
https://github.com/sanand0/xmljson/blob/2ecc2065fe7c87b3d282d362289927f13ce7f8b0/xmljson/__init__.py#L61-L69
13,926
sanand0/xmljson
xmljson/__init__.py
XMLData._fromstring
def _fromstring(value): '''Convert XML string value to None, boolean, int or float''' # NOTE: Is this even possible ? if value is None: return None # FIXME: In XML, booleans are either 0/false or 1/true (lower-case !) if value.lower() == 'true': return Tr...
python
def _fromstring(value): '''Convert XML string value to None, boolean, int or float''' # NOTE: Is this even possible ? if value is None: return None # FIXME: In XML, booleans are either 0/false or 1/true (lower-case !) if value.lower() == 'true': return Tr...
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Convert XML string value to None, boolean, int or float
[ "Convert", "XML", "string", "value", "to", "None", "boolean", "int", "or", "float" ]
2ecc2065fe7c87b3d282d362289927f13ce7f8b0
https://github.com/sanand0/xmljson/blob/2ecc2065fe7c87b3d282d362289927f13ce7f8b0/xmljson/__init__.py#L72-L97
13,927
pysal/esda
esda/join_counts.py
Join_Counts.by_col
def by_col(cls, df, cols, w=None, inplace=False, pvalue='sim', outvals=None, **stat_kws): """ Function to compute a Join_Count statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column ...
python
def by_col(cls, df, cols, w=None, inplace=False, pvalue='sim', outvals=None, **stat_kws): """ Function to compute a Join_Count statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column ...
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Function to compute a Join_Count statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column cols : string or list of string name or list of names of columns to use to co...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/join_counts.py#L171-L214
13,928
pysal/esda
esda/moran.py
Moran_BV_matrix
def Moran_BV_matrix(variables, w, permutations=0, varnames=None): """ Bivariate Moran Matrix Calculates bivariate Moran between all pairs of a set of variables. Parameters ---------- variables : array or pandas.DataFrame sequence of variables to be assessed w ...
python
def Moran_BV_matrix(variables, w, permutations=0, varnames=None): """ Bivariate Moran Matrix Calculates bivariate Moran between all pairs of a set of variables. Parameters ---------- variables : array or pandas.DataFrame sequence of variables to be assessed w ...
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Bivariate Moran Matrix Calculates bivariate Moran between all pairs of a set of variables. Parameters ---------- variables : array or pandas.DataFrame sequence of variables to be assessed w : W a spatial weights object permutations : int ...
[ "Bivariate", "Moran", "Matrix" ]
2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/moran.py#L464-L537
13,929
pysal/esda
esda/moran.py
_Moran_BV_Matrix_array
def _Moran_BV_Matrix_array(variables, w, permutations=0, varnames=None): """ Base calculation for MORAN_BV_Matrix """ if varnames is None: varnames = ['x{}'.format(i) for i in range(k)] k = len(variables) rk = list(range(0, k - 1)) results = {} for i in rk: for j in rang...
python
def _Moran_BV_Matrix_array(variables, w, permutations=0, varnames=None): """ Base calculation for MORAN_BV_Matrix """ if varnames is None: varnames = ['x{}'.format(i) for i in range(k)] k = len(variables) rk = list(range(0, k - 1)) results = {} for i in rk: for j in rang...
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Base calculation for MORAN_BV_Matrix
[ "Base", "calculation", "for", "MORAN_BV_Matrix" ]
2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/moran.py#L540-L558
13,930
pysal/esda
esda/moran.py
Moran_BV.by_col
def by_col(cls, df, x, y=None, w=None, inplace=False, pvalue='sim', outvals=None, **stat_kws): """ Function to compute a Moran_BV statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column ...
python
def by_col(cls, df, x, y=None, w=None, inplace=False, pvalue='sim', outvals=None, **stat_kws): """ Function to compute a Moran_BV statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column ...
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Function to compute a Moran_BV statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column X : list of strings column name or list of column names to use as X values t...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/moran.py#L415-L461
13,931
pysal/esda
esda/moran.py
Moran_Rate.by_col
def by_col(cls, df, events, populations, w=None, inplace=False, pvalue='sim', outvals=None, swapname='', **stat_kws): """ Function to compute a Moran_Rate statistic on a dataframe Arguments --------- df : pandas.DataFrame a pand...
python
def by_col(cls, df, events, populations, w=None, inplace=False, pvalue='sim', outvals=None, swapname='', **stat_kws): """ Function to compute a Moran_Rate statistic on a dataframe Arguments --------- df : pandas.DataFrame a pand...
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Function to compute a Moran_Rate statistic on a dataframe Arguments --------- df : pandas.DataFrame a pandas dataframe with a geometry column events : string or list of strings one or more names where events are stored ...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/moran.py#L679-L758
13,932
pysal/esda
esda/smoothing.py
flatten
def flatten(l, unique=True): """flatten a list of lists Parameters ---------- l : list of lists unique : boolean whether or not only unique items are wanted (default=True) Returns ------- list of single items Examples ----...
python
def flatten(l, unique=True): """flatten a list of lists Parameters ---------- l : list of lists unique : boolean whether or not only unique items are wanted (default=True) Returns ------- list of single items Examples ----...
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flatten a list of lists Parameters ---------- l : list of lists unique : boolean whether or not only unique items are wanted (default=True) Returns ------- list of single items Examples -------- Creating a sample list who...
[ "flatten", "a", "list", "of", "lists" ]
2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L32-L63
13,933
pysal/esda
esda/smoothing.py
weighted_median
def weighted_median(d, w): """A utility function to find a median of d based on w Parameters ---------- d : array (n, 1), variable for which median will be found w : array (n, 1), variable on which d's median will be decided Notes ----- ...
python
def weighted_median(d, w): """A utility function to find a median of d based on w Parameters ---------- d : array (n, 1), variable for which median will be found w : array (n, 1), variable on which d's median will be decided Notes ----- ...
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A utility function to find a median of d based on w Parameters ---------- d : array (n, 1), variable for which median will be found w : array (n, 1), variable on which d's median will be decided Notes ----- d and w are arranged in the sam...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L66-L113
13,934
pysal/esda
esda/smoothing.py
sum_by_n
def sum_by_n(d, w, n): """A utility function to summarize a data array into n values after weighting the array with another weight array w Parameters ---------- d : array (t, 1), numerical values w : array (t, 1), numerical values for weigh...
python
def sum_by_n(d, w, n): """A utility function to summarize a data array into n values after weighting the array with another weight array w Parameters ---------- d : array (t, 1), numerical values w : array (t, 1), numerical values for weigh...
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A utility function to summarize a data array into n values after weighting the array with another weight array w Parameters ---------- d : array (t, 1), numerical values w : array (t, 1), numerical values for weighting n : integer ...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L116-L160
13,935
pysal/esda
esda/smoothing.py
crude_age_standardization
def crude_age_standardization(e, b, n): """A utility function to compute rate through crude age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array (n*h, 1), populat...
python
def crude_age_standardization(e, b, n): """A utility function to compute rate through crude age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array (n*h, 1), populat...
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A utility function to compute rate through crude age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array (n*h, 1), population at risk variable measured for each age grou...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L163-L213
13,936
pysal/esda
esda/smoothing.py
direct_age_standardization
def direct_age_standardization(e, b, s, n, alpha=0.05): """A utility function to compute rate through direct age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array ...
python
def direct_age_standardization(e, b, s, n, alpha=0.05): """A utility function to compute rate through direct age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array ...
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A utility function to compute rate through direct age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array (n*h, 1), population at risk variable measured for each age gro...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L216-L298
13,937
pysal/esda
esda/smoothing.py
indirect_age_standardization
def indirect_age_standardization(e, b, s_e, s_b, n, alpha=0.05): """A utility function to compute rate through indirect age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array ...
python
def indirect_age_standardization(e, b, s_e, s_b, n, alpha=0.05): """A utility function to compute rate through indirect age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array ...
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A utility function to compute rate through indirect age standardization Parameters ---------- e : array (n*h, 1), event variable measured for each age group across n spatial units b : array (n*h, 1), population at risk variable measured for each age g...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/smoothing.py#L301-L379
13,938
pysal/esda
esda/tabular.py
_univariate_handler
def _univariate_handler(df, cols, stat=None, w=None, inplace=True, pvalue = 'sim', outvals = None, swapname='', **kwargs): """ Compute a univariate descriptive statistic `stat` over columns `cols` in `df`. Parameters ---------- df : pandas.DataFrame ...
python
def _univariate_handler(df, cols, stat=None, w=None, inplace=True, pvalue = 'sim', outvals = None, swapname='', **kwargs): """ Compute a univariate descriptive statistic `stat` over columns `cols` in `df`. Parameters ---------- df : pandas.DataFrame ...
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Compute a univariate descriptive statistic `stat` over columns `cols` in `df`. Parameters ---------- df : pandas.DataFrame the dataframe containing columns to compute the descriptive statistics cols : string or list of strings on...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/tabular.py#L10-L98
13,939
pysal/esda
esda/tabular.py
_bivariate_handler
def _bivariate_handler(df, x, y=None, w=None, inplace=True, pvalue='sim', outvals=None, **kwargs): """ Compute a descriptive bivariate statistic over two sets of columns, `x` and `y`, contained in `df`. Parameters ---------- df : pandas.DataFrame ...
python
def _bivariate_handler(df, x, y=None, w=None, inplace=True, pvalue='sim', outvals=None, **kwargs): """ Compute a descriptive bivariate statistic over two sets of columns, `x` and `y`, contained in `df`. Parameters ---------- df : pandas.DataFrame ...
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Compute a descriptive bivariate statistic over two sets of columns, `x` and `y`, contained in `df`. Parameters ---------- df : pandas.DataFrame dataframe in which columns `x` and `y` are contained x : string or list of strings one or more colum...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/tabular.py#L100-L154
13,940
pysal/esda
esda/tabular.py
_swap_ending
def _swap_ending(s, ending, delim='_'): """ Replace the ending of a string, delimited into an arbitrary number of chunks by `delim`, with the ending provided Parameters ---------- s : string string to replace endings ending : string string used to ...
python
def _swap_ending(s, ending, delim='_'): """ Replace the ending of a string, delimited into an arbitrary number of chunks by `delim`, with the ending provided Parameters ---------- s : string string to replace endings ending : string string used to ...
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Replace the ending of a string, delimited into an arbitrary number of chunks by `delim`, with the ending provided Parameters ---------- s : string string to replace endings ending : string string used to replace ending of `s` delim : string ...
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2fafc6ec505e153152a86601d3e0fba080610c20
https://github.com/pysal/esda/blob/2fafc6ec505e153152a86601d3e0fba080610c20/esda/tabular.py#L156-L177
13,941
symengine/symengine.py
symengine/compatibility.py
is_sequence
def is_sequence(i, include=None): """ Return a boolean indicating whether ``i`` is a sequence in the SymPy sense. If anything that fails the test below should be included as being a sequence for your application, set 'include' to that object's type; multiple types should be passed as a tuple of type...
python
def is_sequence(i, include=None): """ Return a boolean indicating whether ``i`` is a sequence in the SymPy sense. If anything that fails the test below should be included as being a sequence for your application, set 'include' to that object's type; multiple types should be passed as a tuple of type...
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Return a boolean indicating whether ``i`` is a sequence in the SymPy sense. If anything that fails the test below should be included as being a sequence for your application, set 'include' to that object's type; multiple types should be passed as a tuple of types. Note: although generators can generate...
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1366cf98ceaade339c5dd24ae3381a0e63ea9dad
https://github.com/symengine/symengine.py/blob/1366cf98ceaade339c5dd24ae3381a0e63ea9dad/symengine/compatibility.py#L245-L282
13,942
symengine/symengine.py
symengine/compatibility.py
as_int
def as_int(n): """ Convert the argument to a builtin integer. The return value is guaranteed to be equal to the input. ValueError is raised if the input has a non-integral value. Examples ======== >>> from sympy.core.compatibility import as_int >>> from sympy import sqrt >>> 3.0 ...
python
def as_int(n): """ Convert the argument to a builtin integer. The return value is guaranteed to be equal to the input. ValueError is raised if the input has a non-integral value. Examples ======== >>> from sympy.core.compatibility import as_int >>> from sympy import sqrt >>> 3.0 ...
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Convert the argument to a builtin integer. The return value is guaranteed to be equal to the input. ValueError is raised if the input has a non-integral value. Examples ======== >>> from sympy.core.compatibility import as_int >>> from sympy import sqrt >>> 3.0 3.0 >>> as_int(3.0) ...
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1366cf98ceaade339c5dd24ae3381a0e63ea9dad
https://github.com/symengine/symengine.py/blob/1366cf98ceaade339c5dd24ae3381a0e63ea9dad/symengine/compatibility.py#L359-L389
13,943
symengine/symengine.py
symengine/compatibility.py
default_sort_key
def default_sort_key(item, order=None): """Return a key that can be used for sorting. The key has the structure: (class_key, (len(args), args), exponent.sort_key(), coefficient) This key is supplied by the sort_key routine of Basic objects when ``item`` is a Basic object or an object (other than ...
python
def default_sort_key(item, order=None): """Return a key that can be used for sorting. The key has the structure: (class_key, (len(args), args), exponent.sort_key(), coefficient) This key is supplied by the sort_key routine of Basic objects when ``item`` is a Basic object or an object (other than ...
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Return a key that can be used for sorting. The key has the structure: (class_key, (len(args), args), exponent.sort_key(), coefficient) This key is supplied by the sort_key routine of Basic objects when ``item`` is a Basic object or an object (other than a string) that sympifies to a Basic object....
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1366cf98ceaade339c5dd24ae3381a0e63ea9dad
https://github.com/symengine/symengine.py/blob/1366cf98ceaade339c5dd24ae3381a0e63ea9dad/symengine/compatibility.py#L392-L541
13,944
symengine/symengine.py
symengine/utilities.py
var
def var(names, **args): """ Create symbols and inject them into the global namespace. INPUT: - s -- a string, either a single variable name, or - a space separated list of variable names, or - a list of variable names. This calls :func:`symbols` with the same...
python
def var(names, **args): """ Create symbols and inject them into the global namespace. INPUT: - s -- a string, either a single variable name, or - a space separated list of variable names, or - a list of variable names. This calls :func:`symbols` with the same...
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Create symbols and inject them into the global namespace. INPUT: - s -- a string, either a single variable name, or - a space separated list of variable names, or - a list of variable names. This calls :func:`symbols` with the same arguments and puts the results ...
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1366cf98ceaade339c5dd24ae3381a0e63ea9dad
https://github.com/symengine/symengine.py/blob/1366cf98ceaade339c5dd24ae3381a0e63ea9dad/symengine/utilities.py#L184-L242
13,945
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph._combine_attribute_arguments
def _combine_attribute_arguments(self, attr_dict, attr): # Note: Code & comments unchanged from DirectedHypergraph """Combines attr_dict and attr dictionaries, by updating attr_dict with attr. :param attr_dict: dictionary of attributes of the node. :param attr: keyword argum...
python
def _combine_attribute_arguments(self, attr_dict, attr): # Note: Code & comments unchanged from DirectedHypergraph """Combines attr_dict and attr dictionaries, by updating attr_dict with attr. :param attr_dict: dictionary of attributes of the node. :param attr: keyword argum...
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Combines attr_dict and attr dictionaries, by updating attr_dict with attr. :param attr_dict: dictionary of attributes of the node. :param attr: keyword arguments of attributes of the node; attr's values will override attr_dict's values if both are pro...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L137-L162
13,946
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.remove_node
def remove_node(self, node): """Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :: >>> H = Undirect...
python
def remove_node(self, node): """Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :: >>> H = Undirect...
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Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :: >>> H = UndirectedHypergraph() >>> H.add_nod...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L256-L288
13,947
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.add_hyperedge
def add_hyperedge(self, nodes, attr_dict=None, **attr): """Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the node set that was not in the hypergraph. A hyperedge without a "...
python
def add_hyperedge(self, nodes, attr_dict=None, **attr): """Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the node set that was not in the hypergraph. A hyperedge without a "...
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Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the node set that was not in the hypergraph. A hyperedge without a "weight" attribute specified will be assigned the defaul...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L384-L447
13,948
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.add_hyperedges
def add_hyperedges(self, hyperedges, attr_dict=None, **attr): """Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node of a hyperedge has not previously been added to the hypergraph, it will automatically be added here. ...
python
def add_hyperedges(self, hyperedges, attr_dict=None, **attr): """Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node of a hyperedge has not previously been added to the hypergraph, it will automatically be added here. ...
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Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node of a hyperedge has not previously been added to the hypergraph, it will automatically be added here. Hyperedges without a "weight" attribute specified will be ...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L449-L487
13,949
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.get_hyperedge_id
def get_hyperedge_id(self, nodes): """From a set of nodes, returns the ID of the hyperedge that this set comprises. :param nodes: iterable container of references to nodes in the the hyperedge to be added :returns: str -- ID of the hyperedge that has that the specifi...
python
def get_hyperedge_id(self, nodes): """From a set of nodes, returns the ID of the hyperedge that this set comprises. :param nodes: iterable container of references to nodes in the the hyperedge to be added :returns: str -- ID of the hyperedge that has that the specifi...
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From a set of nodes, returns the ID of the hyperedge that this set comprises. :param nodes: iterable container of references to nodes in the the hyperedge to be added :returns: str -- ID of the hyperedge that has that the specified node set comprises. ...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L592-L618
13,950
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.get_hyperedge_attribute
def get_hyperedge_attribute(self, hyperedge_id, attribute_name): # Note: Code unchanged from DirectedHypergraph """Given a hyperedge ID and the name of an attribute, get a copy of that hyperedge's attribute. :param hyperedge_id: ID of the hyperedge to retrieve the attribute of. ...
python
def get_hyperedge_attribute(self, hyperedge_id, attribute_name): # Note: Code unchanged from DirectedHypergraph """Given a hyperedge ID and the name of an attribute, get a copy of that hyperedge's attribute. :param hyperedge_id: ID of the hyperedge to retrieve the attribute of. ...
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Given a hyperedge ID and the name of an attribute, get a copy of that hyperedge's attribute. :param hyperedge_id: ID of the hyperedge to retrieve the attribute of. :param attribute_name: name of the attribute to retrieve. :returns: attribute value of the attribute_name key for the ...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L620-L649
13,951
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.get_hyperedge_attributes
def get_hyperedge_attributes(self, hyperedge_id): """Given a hyperedge ID, get a dictionary of copies of that hyperedge's attributes. :param hyperedge_id: ID of the hyperedge to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified hyperedge_id ...
python
def get_hyperedge_attributes(self, hyperedge_id): """Given a hyperedge ID, get a dictionary of copies of that hyperedge's attributes. :param hyperedge_id: ID of the hyperedge to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified hyperedge_id ...
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Given a hyperedge ID, get a dictionary of copies of that hyperedge's attributes. :param hyperedge_id: ID of the hyperedge to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified hyperedge_id (except the private __frozen_nodes entry). :rai...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L651-L668
13,952
Murali-group/halp
halp/undirected_hypergraph.py
UndirectedHypergraph.get_star
def get_star(self, node): """Given a node, get a copy of that node's star, that is, the set of hyperedges that the node belongs to. :param node: node to retrieve the star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's star. :ra...
python
def get_star(self, node): """Given a node, get a copy of that node's star, that is, the set of hyperedges that the node belongs to. :param node: node to retrieve the star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's star. :ra...
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Given a node, get a copy of that node's star, that is, the set of hyperedges that the node belongs to. :param node: node to retrieve the star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's star. :raises: ValueError -- No such node exis...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/undirected_hypergraph.py#L691-L703
13,953
Murali-group/halp
halp/utilities/directed_statistics.py
_F_outdegree
def _F_outdegree(H, F): """Returns the result of a function F applied to the set of outdegrees in in the hypergraph. :param H: the hypergraph whose outdegrees will be operated on. :param F: function to execute on the list of outdegrees in the hypergraph. :returns: result of the given function F. ...
python
def _F_outdegree(H, F): """Returns the result of a function F applied to the set of outdegrees in in the hypergraph. :param H: the hypergraph whose outdegrees will be operated on. :param F: function to execute on the list of outdegrees in the hypergraph. :returns: result of the given function F. ...
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Returns the result of a function F applied to the set of outdegrees in in the hypergraph. :param H: the hypergraph whose outdegrees will be operated on. :param F: function to execute on the list of outdegrees in the hypergraph. :returns: result of the given function F. :raises: TypeError -- Algorit...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_statistics.py#L40-L54
13,954
Murali-group/halp
halp/utilities/directed_statistics.py
_F_indegree
def _F_indegree(H, F): """Returns the result of a function F applied to the list of indegrees in in the hypergraph. :param H: the hypergraph whose indegrees will be operated on. :param F: function to execute on the list of indegrees in the hypergraph. :returns: result of the given function F. :...
python
def _F_indegree(H, F): """Returns the result of a function F applied to the list of indegrees in in the hypergraph. :param H: the hypergraph whose indegrees will be operated on. :param F: function to execute on the list of indegrees in the hypergraph. :returns: result of the given function F. :...
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Returns the result of a function F applied to the list of indegrees in in the hypergraph. :param H: the hypergraph whose indegrees will be operated on. :param F: function to execute on the list of indegrees in the hypergraph. :returns: result of the given function F. :raises: TypeError -- Algorithm...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_statistics.py#L105-L119
13,955
Murali-group/halp
halp/utilities/directed_statistics.py
_F_hyperedge_tail_cardinality
def _F_hyperedge_tail_cardinality(H, F): """Returns the result of a function F applied to the set of cardinalities of hyperedge tails in the hypergraph. :param H: the hypergraph whose tail cardinalities will be operated on. :param F: function to execute on the set of cardinalities i...
python
def _F_hyperedge_tail_cardinality(H, F): """Returns the result of a function F applied to the set of cardinalities of hyperedge tails in the hypergraph. :param H: the hypergraph whose tail cardinalities will be operated on. :param F: function to execute on the set of cardinalities i...
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Returns the result of a function F applied to the set of cardinalities of hyperedge tails in the hypergraph. :param H: the hypergraph whose tail cardinalities will be operated on. :param F: function to execute on the set of cardinalities in the hypergraph. :returns: resu...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_statistics.py#L170-L186
13,956
Murali-group/halp
halp/utilities/directed_statistics.py
_F_hyperedge_head_cardinality
def _F_hyperedge_head_cardinality(H, F): """Returns the result of a function F applied to the set of cardinalities of hyperedge heads in the hypergraph. :param H: the hypergraph whose head cardinalities will be operated on. :param F: function to execute on the set of cardinalities i...
python
def _F_hyperedge_head_cardinality(H, F): """Returns the result of a function F applied to the set of cardinalities of hyperedge heads in the hypergraph. :param H: the hypergraph whose head cardinalities will be operated on. :param F: function to execute on the set of cardinalities i...
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Returns the result of a function F applied to the set of cardinalities of hyperedge heads in the hypergraph. :param H: the hypergraph whose head cardinalities will be operated on. :param F: function to execute on the set of cardinalities in the hypergraph. :returns: resu...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_statistics.py#L240-L256
13,957
Murali-group/halp
halp/utilities/undirected_matrices.py
get_hyperedge_weight_matrix
def get_hyperedge_weight_matrix(H, hyperedge_ids_to_indices): """Creates the diagonal matrix W of hyperedge weights as a sparse matrix. :param H: the hypergraph to find the weights. :param hyperedge_weights: the mapping from the indices of hyperedge IDs to the corresponding hype...
python
def get_hyperedge_weight_matrix(H, hyperedge_ids_to_indices): """Creates the diagonal matrix W of hyperedge weights as a sparse matrix. :param H: the hypergraph to find the weights. :param hyperedge_weights: the mapping from the indices of hyperedge IDs to the corresponding hype...
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Creates the diagonal matrix W of hyperedge weights as a sparse matrix. :param H: the hypergraph to find the weights. :param hyperedge_weights: the mapping from the indices of hyperedge IDs to the corresponding hyperedge weights. :returns: sparse.csc_matrix -- the diagonal edge w...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/undirected_matrices.py#L103-L123
13,958
Murali-group/halp
halp/utilities/undirected_matrices.py
get_hyperedge_degree_matrix
def get_hyperedge_degree_matrix(M): """Creates the diagonal matrix of hyperedge degrees D_e as a sparse matrix, where a hyperedge degree is the cardinality of the hyperedge. :param M: the incidence matrix of the hypergraph to find the D_e matrix on. :returns: sparse.csc_matrix -- the diagonal hyperedge...
python
def get_hyperedge_degree_matrix(M): """Creates the diagonal matrix of hyperedge degrees D_e as a sparse matrix, where a hyperedge degree is the cardinality of the hyperedge. :param M: the incidence matrix of the hypergraph to find the D_e matrix on. :returns: sparse.csc_matrix -- the diagonal hyperedge...
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Creates the diagonal matrix of hyperedge degrees D_e as a sparse matrix, where a hyperedge degree is the cardinality of the hyperedge. :param M: the incidence matrix of the hypergraph to find the D_e matrix on. :returns: sparse.csc_matrix -- the diagonal hyperedge degree matrix as a sparse matr...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/undirected_matrices.py#L126-L140
13,959
Murali-group/halp
halp/utilities/undirected_matrices.py
fast_inverse
def fast_inverse(M): """Computes the inverse of a diagonal matrix. :param H: the diagonal matrix to find the inverse of. :returns: sparse.csc_matrix -- the inverse of the input matrix as a sparse matrix. """ diags = M.diagonal() new_diag = [] for value in diags: new_dia...
python
def fast_inverse(M): """Computes the inverse of a diagonal matrix. :param H: the diagonal matrix to find the inverse of. :returns: sparse.csc_matrix -- the inverse of the input matrix as a sparse matrix. """ diags = M.diagonal() new_diag = [] for value in diags: new_dia...
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Computes the inverse of a diagonal matrix. :param H: the diagonal matrix to find the inverse of. :returns: sparse.csc_matrix -- the inverse of the input matrix as a sparse matrix.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/undirected_matrices.py#L143-L156
13,960
Murali-group/halp
halp/signaling_hypergraph.py
node_iterator
def node_iterator(self): """Provides an iterator over the nodes. """ return iter(self._node_attributes) def has_hypernode(self, hypernode): """Determines if a specific hypernode is present in the hypergraph. :param node: reference to hypernode whose presence is being checked....
python
def node_iterator(self): """Provides an iterator over the nodes. """ return iter(self._node_attributes) def has_hypernode(self, hypernode): """Determines if a specific hypernode is present in the hypergraph. :param node: reference to hypernode whose presence is being checked....
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Provides an iterator over the nodes.
[ "Provides", "an", "iterator", "over", "the", "nodes", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/signaling_hypergraph.py#L243-L256
13,961
Murali-group/halp
halp/signaling_hypergraph.py
add_hypernode
def add_hypernode(self, hypernode, composing_nodes=set(), attr_dict=None, **attr): """Adds a hypernode to the graph, along with any related attributes of the hypernode. :param hypernode: reference to the hypernode being added. :param nodes: reference to the set of nodes that compose ...
python
def add_hypernode(self, hypernode, composing_nodes=set(), attr_dict=None, **attr): """Adds a hypernode to the graph, along with any related attributes of the hypernode. :param hypernode: reference to the hypernode being added. :param nodes: reference to the set of nodes that compose ...
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Adds a hypernode to the graph, along with any related attributes of the hypernode. :param hypernode: reference to the hypernode being added. :param nodes: reference to the set of nodes that compose the hypernode. :param in_hypernodes: set of references to the hypernodes th...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/signaling_hypergraph.py#L305-L344
13,962
Murali-group/halp
halp/algorithms/undirected_partitioning.py
_create_random_starter
def _create_random_starter(node_count): """Creates the random starter for the random walk. :param node_count: number of nodes to create the random vector. :returns: list -- list of starting probabilities for each node. """ pi = np.zeros(node_count, dtype=float) for i in range(node_count): ...
python
def _create_random_starter(node_count): """Creates the random starter for the random walk. :param node_count: number of nodes to create the random vector. :returns: list -- list of starting probabilities for each node. """ pi = np.zeros(node_count, dtype=float) for i in range(node_count): ...
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Creates the random starter for the random walk. :param node_count: number of nodes to create the random vector. :returns: list -- list of starting probabilities for each node.
[ "Creates", "the", "random", "starter", "for", "the", "random", "walk", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/algorithms/undirected_partitioning.py#L188-L202
13,963
Murali-group/halp
halp/algorithms/undirected_partitioning.py
_has_converged
def _has_converged(pi_star, pi): """Checks if the random walk has converged. :param pi_star: the new vector :param pi: the old vector :returns: bool-- True iff pi has converged. """ node_count = pi.shape[0] EPS = 10e-6 for i in range(node_count): if pi[i] - pi_star[i] > EPS: ...
python
def _has_converged(pi_star, pi): """Checks if the random walk has converged. :param pi_star: the new vector :param pi: the old vector :returns: bool-- True iff pi has converged. """ node_count = pi.shape[0] EPS = 10e-6 for i in range(node_count): if pi[i] - pi_star[i] > EPS: ...
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Checks if the random walk has converged. :param pi_star: the new vector :param pi: the old vector :returns: bool-- True iff pi has converged.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/algorithms/undirected_partitioning.py#L205-L219
13,964
Murali-group/halp
halp/utilities/priority_queue.py
PriorityQueue.add_element
def add_element(self, priority, element, count=None): """Adds an element with a specific priority. :param priority: priority of the element. :param element: element to add. """ if count is None: count = next(self.counter) entry = [priority, count, element] ...
python
def add_element(self, priority, element, count=None): """Adds an element with a specific priority. :param priority: priority of the element. :param element: element to add. """ if count is None: count = next(self.counter) entry = [priority, count, element] ...
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Adds an element with a specific priority. :param priority: priority of the element. :param element: element to add.
[ "Adds", "an", "element", "with", "a", "specific", "priority", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/priority_queue.py#L41-L52
13,965
Murali-group/halp
halp/utilities/priority_queue.py
PriorityQueue.reprioritize
def reprioritize(self, priority, element): """Updates the priority of an element. :raises: ValueError -- No such element in the priority queue. """ if element not in self.element_finder: raise ValueError("No such element in the priority queue.") entry = self.element...
python
def reprioritize(self, priority, element): """Updates the priority of an element. :raises: ValueError -- No such element in the priority queue. """ if element not in self.element_finder: raise ValueError("No such element in the priority queue.") entry = self.element...
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Updates the priority of an element. :raises: ValueError -- No such element in the priority queue.
[ "Updates", "the", "priority", "of", "an", "element", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/priority_queue.py#L79-L89
13,966
Murali-group/halp
halp/utilities/priority_queue.py
PriorityQueue.contains_element
def contains_element(self, element): """Determines if an element is contained in the priority queue." :returns: bool -- true iff element is in the priority queue. """ return (element in self.element_finder) and \ (self.element_finder[element][1] != self.INVALID)
python
def contains_element(self, element): """Determines if an element is contained in the priority queue." :returns: bool -- true iff element is in the priority queue. """ return (element in self.element_finder) and \ (self.element_finder[element][1] != self.INVALID)
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Determines if an element is contained in the priority queue." :returns: bool -- true iff element is in the priority queue.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/priority_queue.py#L102-L109
13,967
Murali-group/halp
halp/utilities/priority_queue.py
PriorityQueue.is_empty
def is_empty(self): """Determines if the priority queue has any elements. Performs removal of any elements that were "marked-as-invalid". :returns: true iff the priority queue has no elements. """ while self.pq: if self.pq[0][1] != self.INVALID: retu...
python
def is_empty(self): """Determines if the priority queue has any elements. Performs removal of any elements that were "marked-as-invalid". :returns: true iff the priority queue has no elements. """ while self.pq: if self.pq[0][1] != self.INVALID: retu...
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Determines if the priority queue has any elements. Performs removal of any elements that were "marked-as-invalid". :returns: true iff the priority queue has no elements.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/priority_queue.py#L111-L125
13,968
Murali-group/halp
halp/algorithms/directed_paths.py
is_connected
def is_connected(H, source_node, target_node): """Checks if a target node is connected to a source node. That is, this method determines if a target node can be visited from the source node in the sense of the 'Visit' algorithm. Refer to 'visit's documentation for more details. :param H: the hyper...
python
def is_connected(H, source_node, target_node): """Checks if a target node is connected to a source node. That is, this method determines if a target node can be visited from the source node in the sense of the 'Visit' algorithm. Refer to 'visit's documentation for more details. :param H: the hyper...
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Checks if a target node is connected to a source node. That is, this method determines if a target node can be visited from the source node in the sense of the 'Visit' algorithm. Refer to 'visit's documentation for more details. :param H: the hypergraph to check connectedness on. :param source_nod...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/algorithms/directed_paths.py#L84-L98
13,969
Murali-group/halp
halp/algorithms/directed_paths.py
is_b_connected
def is_b_connected(H, source_node, target_node): """Checks if a target node is B-connected to a source node. A node t is B-connected to a node s iff: - t is s, or - there exists an edge in the backward star of t such that all nodes in the tail of that edge are B-connected to s ...
python
def is_b_connected(H, source_node, target_node): """Checks if a target node is B-connected to a source node. A node t is B-connected to a node s iff: - t is s, or - there exists an edge in the backward star of t such that all nodes in the tail of that edge are B-connected to s ...
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Checks if a target node is B-connected to a source node. A node t is B-connected to a node s iff: - t is s, or - there exists an edge in the backward star of t such that all nodes in the tail of that edge are B-connected to s In other words, this method determines if a target node ...
[ "Checks", "if", "a", "target", "node", "is", "B", "-", "connected", "to", "a", "source", "node", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/algorithms/directed_paths.py#L215-L234
13,970
Murali-group/halp
halp/algorithms/directed_paths.py
is_f_connected
def is_f_connected(H, source_node, target_node): """Checks if a target node is F-connected to a source node. A node t is F-connected to a node s iff s if B-connected to t. Refer to 'f_visit's or 'is_b_connected's documentation for more details. :param H: the hypergraph to check F-connectedness on. ...
python
def is_f_connected(H, source_node, target_node): """Checks if a target node is F-connected to a source node. A node t is F-connected to a node s iff s if B-connected to t. Refer to 'f_visit's or 'is_b_connected's documentation for more details. :param H: the hypergraph to check F-connectedness on. ...
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Checks if a target node is F-connected to a source node. A node t is F-connected to a node s iff s if B-connected to t. Refer to 'f_visit's or 'is_b_connected's documentation for more details. :param H: the hypergraph to check F-connectedness on. :param source_node: the node to check F-connectedness t...
[ "Checks", "if", "a", "target", "node", "is", "F", "-", "connected", "to", "a", "source", "node", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/algorithms/directed_paths.py#L263-L276
13,971
Murali-group/halp
halp/utilities/undirected_graph_transformations.py
from_networkx_graph
def from_networkx_graph(nx_graph): """Returns an UndirectedHypergraph object that is the graph equivalent of the given NetworkX Graph object. :param nx_graph: the NetworkX undirected graph object to transform. :returns: UndirectedHypergraph -- H object equivalent to the NetworkX undirected ...
python
def from_networkx_graph(nx_graph): """Returns an UndirectedHypergraph object that is the graph equivalent of the given NetworkX Graph object. :param nx_graph: the NetworkX undirected graph object to transform. :returns: UndirectedHypergraph -- H object equivalent to the NetworkX undirected ...
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Returns an UndirectedHypergraph object that is the graph equivalent of the given NetworkX Graph object. :param nx_graph: the NetworkX undirected graph object to transform. :returns: UndirectedHypergraph -- H object equivalent to the NetworkX undirected graph. :raises: TypeError -- Transform...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/undirected_graph_transformations.py#L81-L107
13,972
Murali-group/halp
halp/utilities/directed_graph_transformations.py
from_networkx_digraph
def from_networkx_digraph(nx_digraph): """Returns a DirectedHypergraph object that is the graph equivalent of the given NetworkX DiGraph object. :param nx_digraph: the NetworkX directed graph object to transform. :returns: DirectedHypergraph -- hypergraph object equivalent to the NetworkX d...
python
def from_networkx_digraph(nx_digraph): """Returns a DirectedHypergraph object that is the graph equivalent of the given NetworkX DiGraph object. :param nx_digraph: the NetworkX directed graph object to transform. :returns: DirectedHypergraph -- hypergraph object equivalent to the NetworkX d...
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Returns a DirectedHypergraph object that is the graph equivalent of the given NetworkX DiGraph object. :param nx_digraph: the NetworkX directed graph object to transform. :returns: DirectedHypergraph -- hypergraph object equivalent to the NetworkX directed graph. :raises: TypeError -- Trans...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_graph_transformations.py#L81-L110
13,973
Murali-group/halp
halp/utilities/directed_matrices.py
get_tail_incidence_matrix
def get_tail_incidence_matrix(H, nodes_to_indices, hyperedge_ids_to_indices): """Creates the incidence matrix of the tail nodes of the given hypergraph as a sparse matrix. :param H: the hypergraph for which to create the incidence matrix of. :param nodes_to_indices: for each node, maps the node to its ...
python
def get_tail_incidence_matrix(H, nodes_to_indices, hyperedge_ids_to_indices): """Creates the incidence matrix of the tail nodes of the given hypergraph as a sparse matrix. :param H: the hypergraph for which to create the incidence matrix of. :param nodes_to_indices: for each node, maps the node to its ...
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Creates the incidence matrix of the tail nodes of the given hypergraph as a sparse matrix. :param H: the hypergraph for which to create the incidence matrix of. :param nodes_to_indices: for each node, maps the node to its corresponding integer index. :param hyperedge_ids_to_...
[ "Creates", "the", "incidence", "matrix", "of", "the", "tail", "nodes", "of", "the", "given", "hypergraph", "as", "a", "sparse", "matrix", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/utilities/directed_matrices.py#L59-L87
13,974
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.add_node
def add_node(self, node, attr_dict=None, **attr): """Adds a node to the graph, along with any related attributes of the node. :param node: reference to the node being added. :param attr_dict: dictionary of attributes of the node. :param attr: keyword arguments of attributes o...
python
def add_node(self, node, attr_dict=None, **attr): """Adds a node to the graph, along with any related attributes of the node. :param node: reference to the node being added. :param attr_dict: dictionary of attributes of the node. :param attr: keyword arguments of attributes o...
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Adds a node to the graph, along with any related attributes of the node. :param node: reference to the node being added. :param attr_dict: dictionary of attributes of the node. :param attr: keyword arguments of attributes of the node; attr's values will override a...
[ "Adds", "a", "node", "to", "the", "graph", "along", "with", "any", "related", "attributes", "of", "the", "node", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L204-L234
13,975
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.add_nodes
def add_nodes(self, nodes, attr_dict=None, **attr): """Adds multiple nodes to the graph, along with any related attributes of the nodes. :param nodes: iterable container to either references of the nodes OR tuples of (node reference, attribute dictionary); ...
python
def add_nodes(self, nodes, attr_dict=None, **attr): """Adds multiple nodes to the graph, along with any related attributes of the nodes. :param nodes: iterable container to either references of the nodes OR tuples of (node reference, attribute dictionary); ...
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Adds multiple nodes to the graph, along with any related attributes of the nodes. :param nodes: iterable container to either references of the nodes OR tuples of (node reference, attribute dictionary); if an attribute dictionary is provided in the tuple, ...
[ "Adds", "multiple", "nodes", "to", "the", "graph", "along", "with", "any", "related", "attributes", "of", "the", "nodes", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L236-L278
13,976
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.remove_node
def remove_node(self, node): """Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node in either the head or the tail. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :...
python
def remove_node(self, node): """Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node in either the head or the tail. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :...
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Removes a node and its attributes from the hypergraph. Removes every hyperedge that contains this node in either the head or the tail. :param node: reference to the node being added. :raises: ValueError -- No such node exists. Examples: :: >>> H = DirectedHypergrap...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L280-L315
13,977
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_node_attribute
def get_node_attribute(self, node, attribute_name): """Given a node and the name of an attribute, get a copy of that node's attribute. :param node: reference to the node to retrieve the attribute of. :param attribute_name: name of the attribute to retrieve. :returns: attribute v...
python
def get_node_attribute(self, node, attribute_name): """Given a node and the name of an attribute, get a copy of that node's attribute. :param node: reference to the node to retrieve the attribute of. :param attribute_name: name of the attribute to retrieve. :returns: attribute v...
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Given a node and the name of an attribute, get a copy of that node's attribute. :param node: reference to the node to retrieve the attribute of. :param attribute_name: name of the attribute to retrieve. :returns: attribute value of the attribute_name key for the specifie...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
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13,978
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_node_attributes
def get_node_attributes(self, node): """Given a node, get a dictionary with copies of that node's attributes. :param node: reference to the node to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified node. :raises: ValueError -- No such node exi...
python
def get_node_attributes(self, node): """Given a node, get a dictionary with copies of that node's attributes. :param node: reference to the node to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified node. :raises: ValueError -- No such node exi...
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Given a node, get a dictionary with copies of that node's attributes. :param node: reference to the node to retrieve the attributes of. :returns: dict -- copy of each attribute of the specified node. :raises: ValueError -- No such node exists.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
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13,979
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.add_hyperedge
def add_hyperedge(self, tail, head, attr_dict=None, **attr): """Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the tail and head that was not in the hypergraph. A hyperedge without a "weight...
python
def add_hyperedge(self, tail, head, attr_dict=None, **attr): """Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the tail and head that was not in the hypergraph. A hyperedge without a "weight...
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Adds a hyperedge to the hypergraph, along with any related attributes of the hyperedge. This method will automatically add any node from the tail and head that was not in the hypergraph. A hyperedge without a "weight" attribute specified will be assigned the default value of 1. ...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L465-L548
13,980
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.add_hyperedges
def add_hyperedges(self, hyperedges, attr_dict=None, **attr): """Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node in the tail or head of any hyperedge has not previously been added to the hypergraph, it will automatically...
python
def add_hyperedges(self, hyperedges, attr_dict=None, **attr): """Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node in the tail or head of any hyperedge has not previously been added to the hypergraph, it will automatically...
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Adds multiple hyperedges to the graph, along with any related attributes of the hyperedges. If any node in the tail or head of any hyperedge has not previously been added to the hypergraph, it will automatically be added here. Hyperedges without a "weight" attribute speci...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L550-L606
13,981
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_hyperedge_id
def get_hyperedge_id(self, tail, head): """From a tail and head set of nodes, returns the ID of the hyperedge that these sets comprise. :param tail: iterable container of references to nodes in the tail of the hyperedge to be added :param head: iterable container of ...
python
def get_hyperedge_id(self, tail, head): """From a tail and head set of nodes, returns the ID of the hyperedge that these sets comprise. :param tail: iterable container of references to nodes in the tail of the hyperedge to be added :param head: iterable container of ...
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From a tail and head set of nodes, returns the ID of the hyperedge that these sets comprise. :param tail: iterable container of references to nodes in the tail of the hyperedge to be added :param head: iterable container of references to nodes in the head...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L724-L753
13,982
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_forward_star
def get_forward_star(self, node): """Given a node, get a copy of that node's forward star. :param node: node to retrieve the forward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's forward star. :raises: ValueError -- No such node ...
python
def get_forward_star(self, node): """Given a node, get a copy of that node's forward star. :param node: node to retrieve the forward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's forward star. :raises: ValueError -- No such node ...
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Given a node, get a copy of that node's forward star. :param node: node to retrieve the forward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's forward star. :raises: ValueError -- No such node exists.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
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13,983
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_backward_star
def get_backward_star(self, node): """Given a node, get a copy of that node's backward star. :param node: node to retrieve the backward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's backward star. :raises: ValueError -- No such node exis...
python
def get_backward_star(self, node): """Given a node, get a copy of that node's backward star. :param node: node to retrieve the backward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's backward star. :raises: ValueError -- No such node exis...
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Given a node, get a copy of that node's backward star. :param node: node to retrieve the backward-star of. :returns: set -- set of hyperedge_ids for the hyperedges in the node's backward star. :raises: ValueError -- No such node exists.
[ "Given", "a", "node", "get", "a", "copy", "of", "that", "node", "s", "backward", "star", "." ]
6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L846-L857
13,984
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_successors
def get_successors(self, tail): """Given a tail set of nodes, get a list of edges of which the node set is the tail of each edge. :param tail: set of nodes that correspond to the tails of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the h...
python
def get_successors(self, tail): """Given a tail set of nodes, get a list of edges of which the node set is the tail of each edge. :param tail: set of nodes that correspond to the tails of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the h...
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Given a tail set of nodes, get a list of edges of which the node set is the tail of each edge. :param tail: set of nodes that correspond to the tails of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the hyperedges that have tail in...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L859-L875
13,985
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_predecessors
def get_predecessors(self, head): """Given a head set of nodes, get a list of edges of which the node set is the head of each edge. :param head: set of nodes that correspond to the heads of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the...
python
def get_predecessors(self, head): """Given a head set of nodes, get a list of edges of which the node set is the head of each edge. :param head: set of nodes that correspond to the heads of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the...
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Given a head set of nodes, get a list of edges of which the node set is the head of each edge. :param head: set of nodes that correspond to the heads of some (possibly empty) set of edges. :returns: set -- hyperedge_ids of the hyperedges that have head in...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
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13,986
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.is_BF_hypergraph
def is_BF_hypergraph(self): """Indicates whether the hypergraph is a BF-hypergraph. A BF-hypergraph consists of only B-hyperedges and F-hyperedges. See "is_B_hypergraph" or "is_F_hypergraph" for more details. :returns: bool -- True iff the hypergraph is an F-hypergraph. """ ...
python
def is_BF_hypergraph(self): """Indicates whether the hypergraph is a BF-hypergraph. A BF-hypergraph consists of only B-hyperedges and F-hyperedges. See "is_B_hypergraph" or "is_F_hypergraph" for more details. :returns: bool -- True iff the hypergraph is an F-hypergraph. """ ...
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Indicates whether the hypergraph is a BF-hypergraph. A BF-hypergraph consists of only B-hyperedges and F-hyperedges. See "is_B_hypergraph" or "is_F_hypergraph" for more details. :returns: bool -- True iff the hypergraph is an F-hypergraph.
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L928-L941
13,987
Murali-group/halp
halp/directed_hypergraph.py
DirectedHypergraph.get_induced_subhypergraph
def get_induced_subhypergraph(self, nodes): """Gives a new hypergraph that is the subhypergraph of the current hypergraph induced by the provided set of nodes. That is, the induced subhypergraph's node set corresponds precisely to the nodes provided, and the coressponding hyperedges in t...
python
def get_induced_subhypergraph(self, nodes): """Gives a new hypergraph that is the subhypergraph of the current hypergraph induced by the provided set of nodes. That is, the induced subhypergraph's node set corresponds precisely to the nodes provided, and the coressponding hyperedges in t...
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Gives a new hypergraph that is the subhypergraph of the current hypergraph induced by the provided set of nodes. That is, the induced subhypergraph's node set corresponds precisely to the nodes provided, and the coressponding hyperedges in the subhypergraph are only those from the origin...
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6eb27466ba84e2281e18f93b62aae5efb21ef8b3
https://github.com/Murali-group/halp/blob/6eb27466ba84e2281e18f93b62aae5efb21ef8b3/halp/directed_hypergraph.py#L1046-L1061
13,988
aio-libs/multidict
multidict/_multidict_py.py
_Base.getall
def getall(self, key, default=_marker): """Return a list of all values matching the key.""" identity = self._title(key) res = [v for i, k, v in self._impl._items if i == identity] if res: return res if not res and default is not _marker: return default ...
python
def getall(self, key, default=_marker): """Return a list of all values matching the key.""" identity = self._title(key) res = [v for i, k, v in self._impl._items if i == identity] if res: return res if not res and default is not _marker: return default ...
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Return a list of all values matching the key.
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1ecfa942cf6ae79727711a109e1f46ed24fae07f
https://github.com/aio-libs/multidict/blob/1ecfa942cf6ae79727711a109e1f46ed24fae07f/multidict/_multidict_py.py#L64-L72
13,989
aio-libs/multidict
multidict/_multidict_py.py
MultiDict.extend
def extend(self, *args, **kwargs): """Extend current MultiDict with more values. This method must be used instead of update. """ self._extend(args, kwargs, 'extend', self._extend_items)
python
def extend(self, *args, **kwargs): """Extend current MultiDict with more values. This method must be used instead of update. """ self._extend(args, kwargs, 'extend', self._extend_items)
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Extend current MultiDict with more values. This method must be used instead of update.
[ "Extend", "current", "MultiDict", "with", "more", "values", "." ]
1ecfa942cf6ae79727711a109e1f46ed24fae07f
https://github.com/aio-libs/multidict/blob/1ecfa942cf6ae79727711a109e1f46ed24fae07f/multidict/_multidict_py.py#L218-L223
13,990
aio-libs/multidict
multidict/_multidict_py.py
MultiDict.setdefault
def setdefault(self, key, default=None): """Return value for key, set value to default if key is not present.""" identity = self._title(key) for i, k, v in self._impl._items: if i == identity: return v self.add(key, default) return default
python
def setdefault(self, key, default=None): """Return value for key, set value to default if key is not present.""" identity = self._title(key) for i, k, v in self._impl._items: if i == identity: return v self.add(key, default) return default
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Return value for key, set value to default if key is not present.
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1ecfa942cf6ae79727711a109e1f46ed24fae07f
https://github.com/aio-libs/multidict/blob/1ecfa942cf6ae79727711a109e1f46ed24fae07f/multidict/_multidict_py.py#L281-L288
13,991
aio-libs/multidict
multidict/_multidict_py.py
MultiDict.popall
def popall(self, key, default=_marker): """Remove all occurrences of key and return the list of corresponding values. If key is not found, default is returned if given, otherwise KeyError is raised. """ found = False identity = self._title(key) ret = [] ...
python
def popall(self, key, default=_marker): """Remove all occurrences of key and return the list of corresponding values. If key is not found, default is returned if given, otherwise KeyError is raised. """ found = False identity = self._title(key) ret = [] ...
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Remove all occurrences of key and return the list of corresponding values. If key is not found, default is returned if given, otherwise KeyError is raised.
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1ecfa942cf6ae79727711a109e1f46ed24fae07f
https://github.com/aio-libs/multidict/blob/1ecfa942cf6ae79727711a109e1f46ed24fae07f/multidict/_multidict_py.py#L311-L336
13,992
rootpy/rootpy
rootpy/stats/histfactory/histfactory.py
Data.total
def total(self, xbin1=1, xbin2=-2): """ Return the total yield and its associated statistical uncertainty. """ return self.hist.integral(xbin1=xbin1, xbin2=xbin2, error=True)
python
def total(self, xbin1=1, xbin2=-2): """ Return the total yield and its associated statistical uncertainty. """ return self.hist.integral(xbin1=xbin1, xbin2=xbin2, error=True)
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Return the total yield and its associated statistical uncertainty.
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/stats/histfactory/histfactory.py#L133-L137
13,993
rootpy/rootpy
rootpy/stats/histfactory/histfactory.py
Sample.iter_sys
def iter_sys(self): """ Iterate over sys_name, overall_sys, histo_sys. overall_sys or histo_sys may be None for any given sys_name. """ names = self.sys_names() for name in names: osys = self.GetOverallSys(name) hsys = self.GetHistoSys(name) ...
python
def iter_sys(self): """ Iterate over sys_name, overall_sys, histo_sys. overall_sys or histo_sys may be None for any given sys_name. """ names = self.sys_names() for name in names: osys = self.GetOverallSys(name) hsys = self.GetHistoSys(name) ...
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Iterate over sys_name, overall_sys, histo_sys. overall_sys or histo_sys may be None for any given sys_name.
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/stats/histfactory/histfactory.py#L260-L269
13,994
rootpy/rootpy
rootpy/stats/histfactory/histfactory.py
Sample.sys_hist
def sys_hist(self, name=None): """ Return the effective low and high histogram for a given systematic. If this sample does not contain the named systematic then return the nominal histogram for both low and high variations. """ if name is None: low = self.hist...
python
def sys_hist(self, name=None): """ Return the effective low and high histogram for a given systematic. If this sample does not contain the named systematic then return the nominal histogram for both low and high variations. """ if name is None: low = self.hist...
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Return the effective low and high histogram for a given systematic. If this sample does not contain the named systematic then return the nominal histogram for both low and high variations.
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/stats/histfactory/histfactory.py#L271-L293
13,995
rootpy/rootpy
rootpy/stats/histfactory/histfactory.py
Channel.sys_hist
def sys_hist(self, name=None, where=None): """ Return the effective total low and high histogram for a given systematic over samples in this channel. If a sample does not contain the named systematic then its nominal histogram is used for both low and high variations. Pa...
python
def sys_hist(self, name=None, where=None): """ Return the effective total low and high histogram for a given systematic over samples in this channel. If a sample does not contain the named systematic then its nominal histogram is used for both low and high variations. Pa...
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Return the effective total low and high histogram for a given systematic over samples in this channel. If a sample does not contain the named systematic then its nominal histogram is used for both low and high variations. Parameters ---------- name : string, optional (d...
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/stats/histfactory/histfactory.py#L894-L931
13,996
rootpy/rootpy
rootpy/stats/histfactory/histfactory.py
Channel.apply_snapshot
def apply_snapshot(self, argset): """ Create a clone of this Channel where histograms are modified according to the values of the nuisance parameters in the snapshot. This is useful when creating post-fit distribution plots. Parameters ---------- argset : RooArt...
python
def apply_snapshot(self, argset): """ Create a clone of this Channel where histograms are modified according to the values of the nuisance parameters in the snapshot. This is useful when creating post-fit distribution plots. Parameters ---------- argset : RooArt...
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Create a clone of this Channel where histograms are modified according to the values of the nuisance parameters in the snapshot. This is useful when creating post-fit distribution plots. Parameters ---------- argset : RooArtSet A RooArgSet of RooRealVar nuisance par...
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/stats/histfactory/histfactory.py#L1040-L1109
13,997
rootpy/rootpy
rootpy/extern/byteplay2/__init__.py
printcodelist
def printcodelist(codelist, to=sys.stdout): """Get a code list. Print it nicely.""" labeldict = {} pendinglabels = [] for i, (op, arg) in enumerate(codelist): if isinstance(op, Label): pendinglabels.append(op) elif op is SetLineno: pass else: ...
python
def printcodelist(codelist, to=sys.stdout): """Get a code list. Print it nicely.""" labeldict = {} pendinglabels = [] for i, (op, arg) in enumerate(codelist): if isinstance(op, Label): pendinglabels.append(op) elif op is SetLineno: pass else: ...
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Get a code list. Print it nicely.
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/extern/byteplay2/__init__.py#L785-L840
13,998
rootpy/rootpy
rootpy/extern/byteplay2/__init__.py
recompile
def recompile(filename): """Create a .pyc by disassembling the file and assembling it again, printing a message that the reassembled file was loaded.""" # Most of the code here based on the compile.py module. import os import imp import marshal import struct f = open(filename, 'U') ...
python
def recompile(filename): """Create a .pyc by disassembling the file and assembling it again, printing a message that the reassembled file was loaded.""" # Most of the code here based on the compile.py module. import os import imp import marshal import struct f = open(filename, 'U') ...
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Create a .pyc by disassembling the file and assembling it again, printing a message that the reassembled file was loaded.
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/extern/byteplay2/__init__.py#L842-L885
13,999
rootpy/rootpy
rootpy/extern/byteplay2/__init__.py
recompile_all
def recompile_all(path): """recursively recompile all .py files in the directory""" import os if os.path.isdir(path): for root, dirs, files in os.walk(path): for name in files: if name.endswith('.py'): filename = os.path.abspath(os.path.join(root, name...
python
def recompile_all(path): """recursively recompile all .py files in the directory""" import os if os.path.isdir(path): for root, dirs, files in os.walk(path): for name in files: if name.endswith('.py'): filename = os.path.abspath(os.path.join(root, name...
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recursively recompile all .py files in the directory
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3926935e1f2100d8ba68070c2ab44055d4800f73
https://github.com/rootpy/rootpy/blob/3926935e1f2100d8ba68070c2ab44055d4800f73/rootpy/extern/byteplay2/__init__.py#L887-L899