task
stringclasses
5 values
input
stringlengths
89
339
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(c(ccc1C)OC)NC(c1[nH]c2CCCC(c2c1C)=O)=O ### Response: COc1ccc(C)cc1NC(=O)c1[nH]c2c(c1C)C(=O)CCC2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(C)C[C@@H]1C(=N)NC(=O)N1CC1CC1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(OC)c(cc(c1)CCC(NCc1ccccc1Cl)=O)OC ### Response: COc1ccc(CCC(=O)NCc2ccccc2Cl)cc1OC
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]C[C@H]1CCCO1 Fragment 2: [3*]OCC ### Response: CCOc1ccccc1[C@@H]1C(C(=O)c2sc(C)nc2C)=C([O-])C(=O)N1C[C@H]1CCCO1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC1(C)CN([C@@H]2CCN(c3ccccc3Cl)C2=O)CC[S@@]1=O ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [11*]Sc1cc2c(cc1Br)[C@@H](N)C(=O)N2 Fragment 2: [4*]Cc1ccccc1 ### Response: N[C@H]1C(=O)Nc2cc(SCc3ccccc3)c(Br)cc21
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1[nH]nc(CCC(=O)N2C[C@H]3CC[C@@H]2CN(C(=O)c2ccccn2)C3)c1C ### Response: 3
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1nc2ccccc2s1 Fragment 2: [5*]N[C@H](C)CC ### Response: CC[C@@H](C)NC(=O)CCCc1nc2ccccc2s1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(NS(=O)(=O)c2ccc(Cl)c(C(=O)[O-])c2)cc1Cl ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1cccc(Br)c1 Fragment 2: [8*]CN1C[C@@H](CC)CC1=O ### Response: CC[C@H]1CC(=O)N(Cc2cccc(Br)c2)C1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COC(=O)[C@@H](NC(=O)c1cc(NC(=O)C2CCCC2)n(C)n1)C(C)C ### Response: 4
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COCc1nc2scc(-c3ccc(C)cc3)c2c(=O)[nH]1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Nc1ccccc1)C1CCN(C(=O)[C@H]2COc3ccccc3C2)CC1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a sulfonyl group? CCC[NH+](C1CCC([NH3+])CC1)[C@H]1CCN(C)C1=O ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(c(cccc1)COC(CC1CCC1)=O)OC ### Response: COc1ccccc1COC(=O)CC1CCC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C[8*] Fragment 2: [5*]NCCO ### Response: O=C(Cc1cc2ccccc2[nH]1)N[C@H]1CC[C@H]2CC[C@@H](C(=O)NCCO)N2C1=O
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(-n2c(SCC(=O)N)nc3c4c(sc3c2=O)cccc4)ccc(c1)C ### Response: Cc1ccc(-n2c(SCC(N)=O)nc3c(sc4ccccc43)c2=O)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C1CCc2cc(S(=O)(=O)N[C@@H]3CCSC3=O)ccc2N1 ### Response: 0
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(S(=O)(=O)NCC[NH2+][C@H]2CCOC3(CCOCC3)C2)cc1 ### Response: 0
canonicalization
### Instruction: Canonicalize the following SMILES string. c12c(SCCCNC(C)=O)nc(C)nc1sc(C)c2C ### Response: CC(=O)NCCCSc1nc(C)nc2sc(C)c(C)c12
functional_group
### Instruction: Does the molecule contain a amide group? [NH3+][C@@H]1CCC[C@@H](Oc2ccc([N+](=O)[O-])cn2)C1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCCNc1nsnc1Cc1nccs1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a halide group? Cc1nccn1-c1cc(N2CCC(C(=O)N3CCN(c4ccc(O)cc4)CC3)CC2)ncn1 ### Response: No
functional_group
### Instruction: Does the molecule contain a amide group? Cc1cc(C)n(CC(=O)NNC(=O)C2CCC(c3ccccc3)CC2)n1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? N#Cc1ccc(N2CCN(C(=O)c3ccc4c(c3)OCCCO4)CC2)nc1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [11*]Sc1nccn1C Fragment 2: [4*][C@@H](C)c1c(F)cccc1F ### Response: C[C@H](Sc1nccn1C)c1c(F)cccc1F
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Nc1cccc2oc(NCc3nccs3)nc12 ### Response: 2
functional_group
### Instruction: Does the molecule contain a ketone group? COc1ccc(CNC(=O)N[C@H]2CCCC[C@H]2CO)c(OC)c1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cc(C)c(C(=O)Cn2nc(N)n(Nc3cccs3)c2=S)c(C)c1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCn1cnnc1CNC(=O)N[C@H](C)c1cccc(N2CCCC2)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C[C@H](S(=O)(Cc1c(OC)ccc(F)c1)=O)C(N1CCCCC1)=O ### Response: COc1ccc(F)cc1CS(=O)(=O)[C@@H](C)C(=O)N1CCCCC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccccc1 Fragment 2: [3*]OCc1ccccc1 ### Response: CN1CC[C@H]([NH+]2CC[C@H](COCc3ccccc3)C2)C1=O
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@H](CCc1ccccc1)NC(=O)Nc1cccc(C(=O)NC(C)(C)C)c1 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H]1CCC[C@@](O)(C[NH2+][C@@H](C)C[C@@H]2CCC[NH2+]2)C1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COc1ccc(OCC2CC[NH+](CC(=O)Nc3ccn(C)n3)CC2)cc1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1nc(-c2cccc(NC(=O)C[C@@H]3COCC[NH2+]3)c2)cs1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. S(c1cccc(c1)NC(=O)Cn1c2cc(ccc2cc1)Br)C ### Response: CSc1cccc(NC(=O)Cn2ccc3ccc(Br)cc32)c1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC1CCN(C(=O)c2csc(C(C)C)c2)CC1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=Cc1nc2ccccc2n1CCCCOc1ccccc1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(C[NH+]2CCCN(c3ncnc4sc5c(c34)CCCC5)CC2)cc1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)CC[8*] Fragment 2: [14*]c1noc([14*])n1 ### Response: C[C@@H]1[C@H](C)CCC[C@@H]1NC(=O)CCc1nc(-c2ncccn2)no1
canonicalization
### Instruction: Canonicalize the following SMILES string. O=C(/C=C/c1sc(-c2ccc(cc2)F)cc1)N(CC(N(C)C)=O)C ### Response: CN(C)C(=O)CN(C)C(=O)/C=C/c1ccc(-c2ccc(F)cc2)s1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(C)CCn1c(N2CC[NH2+]CC2)nc2c1c(=O)n(C)c(=O)n2C ### Response: 2
functional_group
### Instruction: Does the molecule contain a ketone group? CC(=O)c1cccc(NC(=O)c2cccc(-n3cnnc3)n2)c1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H]1C[C@H](C)CN(S(=O)(=O)N[C@](C)(C(=O)[O-])C2CC2)C1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a carboxyl group? COCc1nn2cc3c(nc2c1-c1ccc(Cl)cc1)C[C@H](c1cccs1)CC3=O ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. C1CCC[C@@H](C)N1C(Cc1c(cccc1F)F)=O ### Response: C[C@@H]1CCCCN1C(=O)Cc1c(F)cccc1F
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cccc(NC(=O)N2C[C@H](C)CC[C@@H]2C)c1C#N ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COC(=O)c1cc(N)c(C(C)(C)C)c(N)c1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? C[C@]1([C@H](O)c2cccc(OC(F)(F)F)c2)CCCO1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. O(C(C)C)c1cc(CNc2cc(C(F)(F)F)ccc2)ccc1 ### Response: CC(C)Oc1cccc(CNc2cccc(C(F)(F)F)c2)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc(c(C)c(c1)[N+]([O-])=O)C(Nc1ccc2c(c1)COC2)=O ### Response: Cc1c(C(=O)Nc2ccc3c(c2)COC3)cccc1[N+](=O)[O-]
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1c(CN[C@H]2C[C@H](C)[NH+](C)C2)cnn1C ### Response: 2
functional_group
### Instruction: Does the molecule contain a hydroxyl group? CCn1cnnc1CNC(=O)NC[C@@H]1CCOC1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C(Cn1cc(NC(=O)Nc2ccc3c(c2)CCC3)cn1)NCCO ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. O[C@H](Cn1cnc2ccc(cc2c1=O)Br)COc1ccc(C)cc1 ### Response: Cc1ccc(OC[C@H](O)Cn2cnc3ccc(Br)cc3c2=O)cc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1cc(/C=N/NC(=O)[C@H](C)Oc2ccc3ccccc3c2)ccc1O ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1cnn2c1NC1=C(C(=O)CCC1)[C@H]2c1ccccc1 Fragment 2: [6*]C(N)=O ### Response: NC(=O)c1cnn2c1NC1=C(C(=O)CCC1)[C@H]2c1ccccc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(CCC(F)(F)F)N1CCC[C@H](c2[nH+]ccn2Cc2ccccn2)C1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a ether group? COc1ccccc1NC1=C(Sc2nc(C)cc(C)n2)C(=O)N(Cc2ccccc2)C1=O ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(NC[C@@]1(O)CCCN(C(=O)c2cnccn2)CC1)N1CCOCC1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a ester group? COC[C@@H](C)CNC(=O)[C@@H]1C=C[C@@H]([NH3+])C1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(c(cc(Br)c1C[NH2+]C[C@@H](O)C)OC)OC ### Response: COc1cc(Br)c(C[NH2+]C[C@H](C)O)cc1OC
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCC[NH2+][C@H](CC1CCOCC1)[C@@H]1CN2CCC[C@@H]2CO1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a aldehyde group? COc1cccc(CNC(=O)c2nnn(-c3nccs3)c2C)c1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(CNC(=O)Nc2cnc3[nH]nc(C)c3c2)cc(OCC2CC2)nc1 ### Response: Cc1n[nH]c2ncc(NC(=O)NCc3ccnc(OCC4CC4)c3)cc12
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COC(=O)[C@](C)(c1ccccn1)N(C)S(=O)(=O)c1cccc(F)c1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. N1(c2n(-c3ccccc3C)c(nn2)S[C@@H](C(Nc2ccc3c(c2)cccc3)=O)C)CCOCC1 ### Response: Cc1ccccc1-n1c(S[C@H](C)C(=O)Nc2ccc3ccccc3c2)nnc1N1CCOCC1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1c(C(=O)NCCc2cccc(O)c2)oc2ccccc12 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cc(CN2CCN(S(=O)(=O)c3cccc(Br)c3)CC2)on1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C1=Cc2ccccc2OC1 Fragment 2: [5*]Nc1cccc(S(=O)(=O)/N=C2/CCCN2)c1 ### Response: O=C(Nc1cccc(S(=O)(=O)/N=C2/CCCN2)c1)C1=Cc2ccccc2OC1
functional_group
### Instruction: Does the molecule contain a amide group? CCn1c(C)cc(C(=O)NC[C@@H](C)[NH+](C)C2CC2)c1C ### Response: Yes
functional_group
### Instruction: Does the molecule contain a ester group? CC(C)COC(=O)c1c(N)n(Cc2ccc3c(c2)OCO3)c2nc3ccccc3nc12 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cn1c(C[NH+](C)Cc2ncn(-c3ccccc3)n2)nnc1C1CC1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cccc(OCCNc2ccc(C#N)c(N)c2)c1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]C[C@H](C)N[5*] Fragment 2: [16*]c1cccc(F)c1F ### Response: C[C@@H](CN1CCN(c2ccccc2)CC1)NC(=O)Cc1cccc(F)c1F
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cc(C(=O)N2CCn3c(C)nnc3C2)c(C)n1Cc1ccco1 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc([C@H]2CCN(C(=O)N[C@@H](c3nccs3)C3CC3)C2)cc1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*][NH2+]CCCN1C(=O)COc2ccccc21 Fragment 2: [14*]c1nc2c(s1)CCCC2 ### Response: C[C@H]([NH2+]CCCN1C(=O)COc2ccccc21)c1nc2c(s1)CCCC2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)c1ccccc1O Fragment 2: [1*]C(=O)c1ccc(Br)cc1F ### Response: O=C(NCCNC(=O)c1ccc(Br)cc1F)c1ccccc1O
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C=CCOc1ccc(-c2nc(C(=O)Nc3ccccc3)cs2)cc1OC ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N(C)C[8*] Fragment 2: [16*]c1cccc(Cl)c1 ### Response: C[C@H](CC(=O)N(C)Cc1cccc(Cl)c1)[NH2+][C@@H](C)C1CCC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H](Cn1cc[nH+]c1)NC(=O)N[C@@H]1CCN(c2c(F)cccc2F)C1 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc(Cl)cc1N1C(=O)CSCC1=O ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=S(=O)([N-]c1cn[nH]c1-c1ccccn1)c1ccc2ccccc2c1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a ether group? Cc1cc(C)c(S(=O)(=O)N=C2C=CC(=O)C=C2)c(C)c1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. C(CNC(=O)N[C@@H]1C=C[C@H](CO)C1)COc1ccc(cc1)F ### Response: O=C(NCCCOc1ccc(F)cc1)N[C@@H]1C=C[C@H](CO)C1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cc(NC(=O)c2cccc(S(=O)(=O)N3CCCC3)c2)ccn1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? N#Cc1ccc(C(=O)NCC(=O)N2CCC[C@H]3CCC[C@@H]32)cc1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[NH2+][C@@]1(c2nc(C)c(C)s2)CCCS[C@@H]1C ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*][C@@H](C)c1nc([14*])no1 Fragment 2: [1*]C(=O)CS[11*] ### Response: CC(C)OC(=O)CS[C@@H](C)c1nc(-c2ccc(Cl)cc2)no1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(C)(C)c1ncc([N-]S(=O)(=O)c2cccc(C(=O)N3CCCC3)c2)cn1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)[C@@H](C)O[3*] Fragment 2: [5*]N([5*])CC ### Response: CCN(Cc1nc2ccccc2c(=O)[nH]1)C(=O)[C@@H](C)Oc1cccc(C=O)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCCC(=O)N[C@@H]1CCC[NH+](Cc2ccc(F)c(OC)c2)C1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a hydroxyl group? N#CCN(C(=O)CSCc1ccc(C#N)cc1)C1CCCC1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[C@@H](CSC)[NH+](C)Cn1nc(-c2cccs2)[nH]c1=S ### Response: 4
functional_group
### Instruction: Does the molecule contain a nitrile group? O=C(c1ccc(F)c(F)c1F)N1CCCCCC1 ### Response: No
functional_group
### Instruction: Does the molecule contain a amine group? CC[NH+]1CCN(c2cc(CNC(=O)NCc3ccc(Cl)cc3)cc[nH+]2)CC1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CN(C)S(=O)(=O)N1CCN(c2ccnc(N3CCCCC3)n2)CC1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COc1ccc(-c2cnc3c(c2)CN(C(=O)c2ccc4c(c2)OCCO4)CC3)cc1OC ### Response: Yes