task
stringclasses
5 values
input
stringlengths
89
339
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1nc([14*])no1 Fragment 2: [3*]OCc1nc([14*])no1 ### Response: Cc1ccc(-c2noc(COc3ccc(Cl)cc3)n2)s1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H](O)c1ccc(F)cc1OCc1nc(C(C)(C)C)cs1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc(C)ccc1N1C[C@H](CC1=O)C(=O)OCc1onc(n1)C ### Response: Cc1ccc(N2C[C@@H](C(=O)OCc3nc(C)no3)CC2=O)cc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(C)NC(=O)C1(Cc2cc(-c3ccc(F)cc3F)no2)CCOCC1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCc1nn(C)cc1CNC(=O)c1ccn2cncc2c1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1nnc2c3c4c(sc3n3c(C)nnc3n12)C[NH+](C)C(C)(C)C4 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(C)(C)Oc1ccc(C(=O)Nc2ccc(NC(=O)NC3CC3)cc2)cc1 ### Response: 0
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H](O)[C@H](C)N1CCN(c2ccccc2Cl)CC1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1ccnc([14*])n1 Fragment 2: [6*]C(N)=O ### Response: NC(=O)C1CCN(c2nccc(N3CC[C@@H](O)C3)n2)CC1
functional_group
### Instruction: Does the molecule contain a ether group? COc1ccc(/C=C2\NC(=S)N(Cc3ccccc3Cl)C2=O)cc1O ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [15*][C@@H]1CCC[C@H]1C#N Fragment 2: [16*]c1ccccc1Br ### Response: N#C[C@@H]1CCC[C@H]1Sc1ccccc1Br
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC1(C)[C@H]2CC[C@]1(CS(=O)(=O)NCc1ccccc1N1CCOCC1)C(=O)C2 ### Response: 2
functional_group
### Instruction: Does the molecule contain a amine group? CC[NH+](CC)C[C@H]1CC[NH2+]C1 ### Response: No
functional_group
### Instruction: Does the molecule contain a ketone group? Cc1ccccc1CNC(=O)[C@@H]1CCCN(S(=O)(=O)Cc2ccc(Cl)cc2)C1 ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? FC(F)(F)c1cccc(-c2nnn(C/C=C/Cl)n2)c1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N[C@H]([8*])CC Fragment 2: [4*][C@H]([8*])CC ### Response: CC[C@H](NC(=O)N1CCN(C(=O)c2ccncc2)CC1)c1ccncc1
canonicalization
### Instruction: Canonicalize the following SMILES string. c12c3nnc(SCC(Nc4ccc(cc4[N+]([O-])=O)OC)=O)n3cnc2sc2CCCCc12 ### Response: COc1ccc(NC(=O)CSc2nnc3c4c5c(sc4ncn23)CCCC5)c([N+](=O)[O-])c1
functional_group
### Instruction: Does the molecule contain a aldehyde group? O=C(Cn1ccc2ccc(Cl)cc21)NNC(=O)c1ccccc1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(ccc([C@]2(C)NC(=O)N(C2=O)Cc2ccc(cc2)C)cc1)OC ### Response: COc1ccc([C@]2(C)NC(=O)N(Cc3ccc(C)cc3)C2=O)cc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. NC(=O)CN(C(=O)N[C@@H]1CCOC1)[C@@H]1CCC[NH2+]C1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(F)ccc(NC(NC2CCCC2)=O)c(OCC(F)F)c1 ### Response: O=C(Nc1ccc(F)cc1OCC(F)F)NC1CCCC1
canonicalization
### Instruction: Canonicalize the following SMILES string. C([NH+](C)[C@H]1C[C@@H](O)CC1)C(C)(C)C ### Response: C[NH+](CC(C)(C)C)[C@@H]1CC[C@H](O)C1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC(=O)Nc1cccc(CNC(=O)N[C@H](C)C(=O)NCc2ccco2)c1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(NC(C)=O)cc2ccc1CCc1ccc(CC2)cc1 ### Response: CC(=O)Nc1cc2ccc1CCc1ccc(cc1)CC2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccccc1[C@@H]1C[C@H]1C(=O)N1CCn2c(nnc2-c2ccccc2)C1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. C(CC)([C@@H]1CC[C@H]([C@@H](C1)[NH+]1[C@@H](C)CCCC1)C[NH3+])(C)C ### Response: CCC(C)(C)[C@@H]1CC[C@@H](C[NH3+])[C@H]([NH+]2CCCC[C@@H]2C)C1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(C)(C[NH+]1CCC(Nc2ccccc2)CC1)S(C)(=O)=O ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. C1CN(C[C@@H]([NH2+]1)C)Cc1ccnc(Br)c1 ### Response: C[C@H]1CN(Cc2ccnc(Br)c2)CC[NH2+]1
canonicalization
### Instruction: Canonicalize the following SMILES string. N1(C)C(=O)C[C@H](CNC(CCc2nc3c(cccc3)[nH]2)=O)N(C)C1=O ### Response: CN1C(=O)C[C@H](CNC(=O)CCc2nc3ccccc3[nH]2)N(C)C1=O
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CN(Cc1nccn1Cc1ccccc1)C(=O)c1ccc(C(N)=O)cc1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COC[C@H]1CCCC[NH+]1Cc1cc2ccc(C)cc2[nH]c1=O ### Response: 1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? Cn1ncnc1CCNC(=O)CSc1cccc2cccc(Cl)c12 ### Response: Yes
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC[C@@H]1CC[C@@H]([NH2+][C@@H]2CCCCC2(C)C)C1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1cccs1 Fragment 2: [1*]C(=O)C1([15*])CC1 ### Response: COc1ccc(CNC(=O)C2(c3cc(-c4cccs4)on3)CC2)cc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(CSc1nnc(C(c2ccccc2)c2ccccc2)o1)Nc1ccc(F)cc1 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C([O-])[C@H]1C[C@H](O)CN1C(=O)/C=C/c1c(F)cccc1Cl ### Response: 3
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC1CC[NH+](Cc2nc(=O)c3ccccc3[nH]2)CC1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? C[C@H](Cn1ccnc1)[NH2+]Cc1cc(F)cc(Br)c1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a nitro group? CO[C@H](CNC(=O)C(=O)c1ccc(C)cc1)c1cccc(Cl)c1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Nc1nccs1)c1noc2c1CCCC2 ### Response: 1
functional_group
### Instruction: Does the molecule contain a carboxyl group? CC[NH+]1CC[C@H](NCc2cnc(OCC(C)C)c(Cl)c2)[C@H](C)C1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C([O-])CN(C(=O)[C@H]1CC[C@H]2CCCC[C@H]2[NH2+]1)C1CC1 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1nc2ccccc2n1CCCNc1ccc(C#N)cc1[N+](=O)[O-] ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCOCC1 Fragment 2: [12*]S(=O)(=O)c1ccsc1[14*] ### Response: Cn1/c(=N/C(=O)c2sccc2S(=O)(=O)N2CCOCC2)sc2ccccc21
canonicalization
### Instruction: Canonicalize the following SMILES string. C(Nc1cc(ccc1C)C(N([C@@H](Cc1nccc(c1)C)C)C)=O)(=O)C1CC1 ### Response: Cc1ccnc(C[C@@H](C)N(C)C(=O)c2ccc(C)c(NC(=O)C3CC3)c2)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. C[NH+](C)C1(CCOCC1)CNS(c1sc(cc1)CC)(=O)=O ### Response: CCc1ccc(S(=O)(=O)NCC2([NH+](C)C)CCOCC2)s1
canonicalization
### Instruction: Canonicalize the following SMILES string. C[C@H]1CCC[C@H](C)[NH+]1Cc1cccc(n1)N ### Response: C[C@H]1CCC[C@H](C)[NH+]1Cc1cccc(N)n1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [9*]n1cncn1 Fragment 2: [5*]Nc1cccc([16*])c1C ### Response: COc1ccccc1COc1cccc(NC(=O)[C@H](C)n2cncn2)c1C
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C=C)NC(=O)CN1CCN(CC1)c1nccn2c1nnc2 ### Response: C=CCNC(=O)CN1CCN(c2nccn3cnnc23)CC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCSCCOC(=O)C1=C(C)Nc2ncnn2[C@H]1c1ccccc1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a hydroxyl group? CCN(Cc1ccc(O)cc1)c1ccc(N)cc1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a nitro group? COC(=O)C[C@H](NC(=O)C[C@H]1c2ccccc2C=CN1C(C)=O)C1CC1 ### Response: No
functional_group
### Instruction: Does the molecule contain a carboxyl group? CN(C)S(=O)(=O)c1cc(C(=O)NCC(C)(C)[NH+]2CCc3ccccc3C2)ccc1Cl ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC(C)C1=NN=C(C(=O)NCc2cccnc2OC2CCCC2)C1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. C1[C@](OC(=O)C1)(CC)CCCC ### Response: CCCC[C@@]1(CC)CCC(=O)O1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCN1CCN(C(=O)c2n[nH]c(C(C)C)n2)C[C@H]1C ### Response: 3
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccccc1C Fragment 2: [5*]Nc1ccc([16*])cc1 ### Response: CCOc1ccc(NC(=O)c2cccc3c2N[C@H](c2ccccc2C)[C@H]2CC=C[C@H]32)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[NH+](C)[C@@H]1CC[C@@H](NC(=O)CNC(=O)Cc2cccc3ccccc23)C1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(CNC(=O)c1ccccc1)N[C@H]1CCN(c2ccccc2)C1=O ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc(-n2nnnc2-c2c[nH]c3cc(Cl)ccc23)cc1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC(C)(C)C(=O)N1CCOc2ccc(NC(=O)/C=C/c3cccnc3)cc21 ### Response: 3
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccccc1[16*] Fragment 2: [5*][NH+](C)CCCC ### Response: CCCC[NH+](C)Cc1ccccc1N1CCOCC1
functional_group
### Instruction: Does the molecule contain a amide group? CN1CCN(c2ncc(C[NH2+]C(C)(C)C)s2)C(C)(C)C1=O ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cc[nH]/c(=N\S(=O)(=O)c2ccc(-c3ncc(-c4ccccc4)o3)cc2)c1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@]1(C)(C(Nc2c(C)snc2C)=O)Sc2c(N(C1=O)CC)cccc2 ### Response: CCN1C(=O)[C@](C)(C(=O)Nc2c(C)nsc2C)Sc2ccccc21
ring_counting
### Instruction: Count the six-membered rings in the following molecule. N#Cc1nc(NC(=O)CC23CC4CC(CC(C4)C2)C3)[n-]c1C#N ### Response: 4
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC1=C(C(=O)N2CCCCC2)[C@H](c2cccc(O)c2)C2=C(CC(C)(C)CC2=O)N1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a aldehyde group? CCc1ccc(OCc2nc3ccccc3n2CC(=O)N2CCC(C)CC2)cc1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC[C@@H](C)[C@@H](NC(=O)c1ccc(Cl)cc1)C(=O)Nc1ccc(F)c([N+](=O)[O-])c1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1cc2c(s1)CC[C@@H](C)C2 Fragment 2: [10*]N1C[C@H]([15*])CC1=O ### Response: COc1cccc(N2C[C@H](C(=O)NNC(=O)c3cc4c(s3)CC[C@@H](C)C4)CC2=O)c1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cncc(C(=O)Nc2c(/C(N)=N/O)cnn2C)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc2c(c1)[C@H](N)[C@H]([NH+](C)CC(C)(C)C)CC2 ### Response: 3
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COc1ccc(C[NH+]2C[C@H]3CC[C@@H]2CN(C)C3)c(OC)c1OC ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC[8*] Fragment 2: [3*]Oc1ccc(Cl)c(CC)c1 ### Response: CCc1cc(OCCn2cc(C#N)cn2)ccc1Cl
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCN(CC1CC1)C(=O)C1(NC(=O)NCc2ccccc2)CCCC1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1cccc2cccnc12 Fragment 2: [5*][NH+]1CCC[C@@H]([15*])C1 ### Response: O=C(CC[C@@H]1CCC[NH+](Cc2cccc3cccnc23)C1)N1CCCC1
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C(=O)NNC(=S)Nc1ccccc1)c1c(Cl)cccc1Cl ### Response: O=C(Cc1c(Cl)cccc1Cl)NNC(=S)Nc1ccccc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@H](CCn1cccn1)[NH+]1CCC2(CC1)C(=O)N(CCc1ccccc1)C(=O)N2C ### Response: 4
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@H](OC(=O)C1CCCC1)C(=O)Nc1ccc(C(F)(F)F)cc1 ### Response: 3
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1nc(Br)ccc1NC(=O)NCc1cnn(C)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1N(C(CCSCc2cc(C)on2)=O)CCN(c2ncccn2)C1 ### Response: Cc1cc(CSCCC(=O)N2CCN(c3ncccn3)CC2)no1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1ncccc1C(=O)N1CCN(C[C@H](O)c2cccs2)CC1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? Cc1cccnc1NC(=O)[C@H]1CCCN(c2cnc3ccccc3n2)C1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? C=CCOC(=O)C1=C(C)Nc2ncnn2[C@H]1c1ccccc1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a nitro group? Cc1cccc(N(C)C(=O)c2ccc([N+](=O)[O-])c(C)c2)c1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccc(C)c2c1N[C@H](c1ccc(N(C)C)cc1)[C@@H]1CC=C[C@@H]21 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCOC(=O)[C@H]1CCCN(C(=O)[C@H]2C[C@H](c3ccccc3)CN(C(=O)c3cccc(F)c3)C2)C1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? [NH3+]C[C@H]1Cc2cc(-c3ccc(C(=O)N4CCCCC4)o3)cc(F)c2O1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H]1CN(c2ccc([C@@H](C)O)c(O)c2)CC(C)(C)O1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [7*]Cc1c([14*])[nH]c2cc(OC)ccc12 Fragment 2: [16*]c1ccc(OC)cc1 ### Response: COc1ccc(N2C(=O)/C(=C/c3c(C(=O)[O-])[nH]c4cc(OC)ccc34)SC2=S)cc1
functional_group
### Instruction: Does the molecule contain a amine group? CO[C@@H]1CCC[C@@H]1n1c(N)[nH+]c2ccc(C)cc21 ### Response: Yes
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1cc(C)cc(O)c1C=O ### Response: 0
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(C)c1nc2c(c(-c3ccc(S(C)(=O)=O)cc3)n1)CCCC2 ### Response: 1
functional_group
### Instruction: Does the molecule contain a thiol group? C[C@H](CS)CN1CCC[NH+](C)CC1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C=C(C)C[NH+](CC)CC(=O)N[C@H](C)C(=O)N1CCCCC1 ### Response: 3
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COC(=O)c1cc(S(=O)(=O)N(C)Cc2cccc(OC)c2)cn1C ### Response: 1
functional_group
### Instruction: Does the molecule contain a amide group? Cc1ccc(NC(=O)c2cc(C(C)C)no2)c(O)c1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a halide group? O=C([O-])[C@@H](c1ccccc1)N1C(=O)/C(=C\c2ccc(-c3ccc(F)cc3)o2)SC1=S ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cnn(CC(=O)N2CCC[C@H]2c2cc3n(n2)[C@@H](C(F)(F)F)C[C@@H](C)N3)c1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cccc([C@@H](C)NC(=O)c2cn(CC(N)=O)nn2)c1C ### Response: 2