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  1. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json +8 -0
  2. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv +3 -0
  3. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json +8 -0
  4. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv +4 -0
  5. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json +8 -0
  6. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv +118 -0
  7. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json +8 -0
  8. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv +3 -0
  9. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json +8 -0
  10. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv +4 -0
  11. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json +8 -0
  12. train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv +118 -0
  13. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json +8 -0
  14. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv +3 -0
  15. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json +8 -0
  16. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv +4 -0
  17. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json +8 -0
  18. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv +51 -0
  19. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json +8 -0
  20. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv +3 -0
  21. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json +8 -0
  22. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv +4 -0
  23. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json +8 -0
  24. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv +51 -0
  25. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json +8 -0
  26. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv +3 -0
  27. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json +8 -0
  28. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.tsv +4 -0
  29. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.json +8 -0
  30. train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.tsv +51 -0
  31. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json +8 -0
  32. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv +3 -0
  33. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json +8 -0
  34. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv +4 -0
  35. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json +8 -0
  36. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv +118 -0
  37. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json +8 -0
  38. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv +3 -0
  39. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json +8 -0
  40. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv +4 -0
  41. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json +8 -0
  42. train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv +118 -0
  43. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json +8 -0
  44. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv +3 -0
  45. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json +8 -0
  46. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv +4 -0
  47. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json +8 -0
  48. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv +51 -0
  49. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json +8 -0
  50. train/derivatives/totalsegmentator/sub-001/ses-vida/anat/sub-001_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv +3 -0
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ index name
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+ 1 trunk
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+ 2 extremeties
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
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+ index name
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+ 1 subcutaneous_fat
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+ 2 visceral_fat
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+ 3 skeletal_muscle
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ index name
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+ 1 spleen
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+ 4 gallbladder
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+ 6 stomach
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+ 11 lung_lower_lobe_left
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+ 17 thyroid_gland
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+ 19 duodenum
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+ 20 colon
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+ 21 urinary_bladder
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+ 22 prostate
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+ 23 kidney_cyst_left
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+ 49 vertebrae_C2
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+ 50 vertebrae_C1
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+ 51 heart
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+ 52 aorta
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+ 53 pulmonary_vein
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+ 54 brachiocephalic_trunk
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+ 55 subclavian_artery_right
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+ 56 subclavian_artery_left
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+ 57 common_carotid_artery_right
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+ 58 common_carotid_artery_left
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+ 59 brachiocephalic_vein_left
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+ 60 brachiocephalic_vein_right
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+ 61 atrial_appendage_left
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+ 62 superior_vena_cava
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+ 63 inferior_vena_cava
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+ 64 portal_vein_and_splenic_vein
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+ 65 iliac_artery_left
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+ 66 iliac_artery_right
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+ 67 iliac_vena_left
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+ 68 iliac_vena_right
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+ 69 humerus_left
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+ 71 scapula_left
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+ 79 spinal_cord
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+ 84 gluteus_minimus_left
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+ 88 iliopsoas_left
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+ 89 iliopsoas_right
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+ 90 brain
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+ 91 skull
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+ 97 rib_left_6
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+ 108 rib_right_5
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+ 109 rib_right_6
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+ 110 rib_right_7
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+ 111 rib_right_8
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+ 112 rib_right_9
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+ 113 rib_right_10
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+ 114 rib_right_11
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+ 115 rib_right_12
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+ 116 sternum
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+ 117 costal_cartilages
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json ADDED
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ index name
2
+ 1 trunk
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+ 2 extremeties
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ index name
2
+ 1 subcutaneous_fat
3
+ 2 visceral_fat
4
+ 3 skeletal_muscle
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json ADDED
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+ {
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+ "Sources": [
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+ "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
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+ ],
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+ "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
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+ "TotalsegmentatorArgs": "--ml --body_seg",
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+ "TotalsegmentatorVersion": "2.5.0\n"
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+ }
train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv ADDED
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1
+ index name
2
+ 1 spleen
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+ 2 kidney_right
4
+ 3 kidney_left
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+ 4 gallbladder
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+ 5 liver
7
+ 6 stomach
8
+ 7 pancreas
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+ 8 adrenal_gland_right
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+ 9 adrenal_gland_left
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+ 10 lung_upper_lobe_left
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+ 11 lung_lower_lobe_left
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+ 12 lung_upper_lobe_right
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+ 13 lung_middle_lobe_right
15
+ 14 lung_lower_lobe_right
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+ 15 esophagus
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+ 16 trachea
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+ 17 thyroid_gland
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+ 18 small_bowel
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+ 19 duodenum
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+ 20 colon
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+ 21 urinary_bladder
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+ 22 prostate
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+ 23 kidney_cyst_left
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+ 24 kidney_cyst_right
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+ 25 sacrum
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+ 26 vertebrae_S1
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+ 27 vertebrae_L5
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+ 28 vertebrae_L4
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+ 29 vertebrae_L3
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+ 30 vertebrae_L2
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+ 31 vertebrae_L1
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+ 32 vertebrae_T12
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+ 33 vertebrae_T11
35
+ 34 vertebrae_T10
36
+ 35 vertebrae_T9
37
+ 36 vertebrae_T8
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+ 37 vertebrae_T7
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+ 38 vertebrae_T6
40
+ 39 vertebrae_T5
41
+ 40 vertebrae_T4
42
+ 41 vertebrae_T3
43
+ 42 vertebrae_T2
44
+ 43 vertebrae_T1
45
+ 44 vertebrae_C7
46
+ 45 vertebrae_C6
47
+ 46 vertebrae_C5
48
+ 47 vertebrae_C4
49
+ 48 vertebrae_C3
50
+ 49 vertebrae_C2
51
+ 50 vertebrae_C1
52
+ 51 heart
53
+ 52 aorta
54
+ 53 pulmonary_vein
55
+ 54 brachiocephalic_trunk
56
+ 55 subclavian_artery_right
57
+ 56 subclavian_artery_left
58
+ 57 common_carotid_artery_right
59
+ 58 common_carotid_artery_left
60
+ 59 brachiocephalic_vein_left
61
+ 60 brachiocephalic_vein_right
62
+ 61 atrial_appendage_left
63
+ 62 superior_vena_cava
64
+ 63 inferior_vena_cava
65
+ 64 portal_vein_and_splenic_vein
66
+ 65 iliac_artery_left
67
+ 66 iliac_artery_right
68
+ 67 iliac_vena_left
69
+ 68 iliac_vena_right
70
+ 69 humerus_left
71
+ 70 humerus_right
72
+ 71 scapula_left
73
+ 72 scapula_right
74
+ 73 clavicula_left
75
+ 74 clavicula_right
76
+ 75 femur_left
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+ 76 femur_right
78
+ 77 hip_left
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+ 78 hip_right
80
+ 79 spinal_cord
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+ 80 gluteus_maximus_left
82
+ 81 gluteus_maximus_right
83
+ 82 gluteus_medius_left
84
+ 83 gluteus_medius_right
85
+ 84 gluteus_minimus_left
86
+ 85 gluteus_minimus_right
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