query stringclasses 175 values | positive listlengths 1 9 | negative listlengths 10 10 | system stringlengths 69 2.19k |
|---|---|---|---|
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'In summary, our patient was treated for Streptococcusfaecium endocarditis with both ampicillin and the aminoglycoside antibiotic, tobramycin.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcusfaecium'? | [
"streptococcus faecium (enterococcus faecium)",
"enterococcus faecium (streptococcus faecium)"
] | [
"streptococcus faecalis (enterococcus faecalis)",
"streptococcus ferus",
"streptococcus faecium var. casseliflavus (enterococcus casseliflavus)",
"enterococcus faecalis (streptococcus glycerinaceus)",
"streptococcus fermentans",
"streptococcus faecium subsp. casseliflavus (enterococcus casseliflavus)",
... | Given the context 'In summary, our patient was treated for Streptococcusfaecium endocarditis with both ampicillin and the aminoglycoside antibiotic, tobramycin.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'The authors also wish to thank Dr. Howard S. Forster for referring this patient to us, Ms. Mary Murray and Deborah Beauvais for manuscript preparation, and Ms. Gertrude Barden, MT (ASCP), MHS, for technical assistance and advice in evaluation of this patient.
', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'The authors also wish to thank Dr. Howard S. Forster for referring this patient to us, Ms. Mary Murray and Deborah Beauvais for manuscript preparation, and Ms. Gertrude Barden, MT (ASCP), MHS, for technical assistance and advice in evaluation of this patient.
', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'Facklam RR: Recognition of group D streptococcal species of human origin by biochemical and
physiological tests.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus faecium'? | [
"streptococcus faecium (enterococcus faecium)",
"enterococcus faecium (streptococcus faecium)"
] | [
"enterenecus faecium (candidatus enterenecus faecium)",
"streptococcus faecalis (enterococcus faecalis)",
"brachybacterium faecium",
"streptococcus faecium var. casseliflavus (enterococcus casseliflavus)",
"bacteroides faecium",
"sphingobacterium faecium",
"enterococcus faecium ef_aus0050",
"enterococ... | Given the context 'Shungu DL, Cornett JB, Shockman GD: Morphological and physiological study of autolytic
defective Streptococcus faecium strains.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcusfaecium'? | [
"streptococcus faecium (enterococcus faecium)",
"enterococcus faecium (streptococcus faecium)"
] | [
"streptococcus faecalis (enterococcus faecalis)",
"streptococcus ferus",
"streptococcus faecium var. casseliflavus (enterococcus casseliflavus)",
"enterococcus faecalis (streptococcus glycerinaceus)",
"streptococcus fermentans",
"streptococcus faecium subsp. casseliflavus (enterococcus casseliflavus)",
... | Given the context 'Moellering RC Jr, Korzeniowski OM, Sande MA, et al: Species-specific resistance to antimicrobial
synergism in Streptococcusfaecium and Streptococcusfaecalis.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcusfaecalis'? | [
"streptococcus faecalis (enterococcus faecalis)"
] | [
"streptococcus alactolyticus (streptococcus intestinalis)",
"streptococcus intestinalis (streptococcus alactolyticus)",
"streptococcus sp. acf__srx_05",
"streptococcus faecavium (candidatus streptococcus faecavium)",
"streptococcus caprinus (streptococcus gallolyticus)",
"streptococcus sp. f1",
"strepto... | Given the context 'Moellering RC Jr, Korzeniowski OM, Sande MA, et al: Species-specific resistance to antimicrobial
synergism in Streptococcusfaecium and Streptococcusfaecalis.', answer the user's query. |
What is the biomedical concept corresponding to 's. faecalis'? | [
"streptococcus faecalis (enterococcus faecalis)",
"enterococcus faecalis (streptococcus glycerinaceus)",
"streptococcus liquefaciens (enterococcus faecalis)",
"enterocoque (enterococcus faecalis)"
] | [
"staphylococcus faecalis ('staphylococcus faecalis')",
"'staphylococcus faecalis' (staphylococcus faecalis)",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"bacteroides faecalis",
"peribacillus faecalis",
"actinomyces faecalis",
"pedobacter faecalis"... | Given the context 'Moellering RC Jr, Murray BE, Schoenbaum SC, et al: A novel mechanism of resistance to penicillin
gentamicin synergism in S. faecalis.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcusfaecalis'? | [
"streptococcus faecalis (enterococcus faecalis)"
] | [
"streptococcus alactolyticus (streptococcus intestinalis)",
"streptococcus intestinalis (streptococcus alactolyticus)",
"streptococcus sp. acf__srx_05",
"streptococcus faecavium (candidatus streptococcus faecavium)",
"streptococcus caprinus (streptococcus gallolyticus)",
"streptococcus sp. f1",
"strepto... | Given the context 'Krogstad DJ, Korfhagen TR, Moellering RC Jr, et al: Aminoglycoside-inactivating enzymes in
clinical isolates of Streptococcusfaecalis: An explanation for resistance to antibiotic synergism.', answer the user's query. |
What is the biomedical concept corresponding to 's. faecium'? | [
"streptococcus faecium (enterococcus faecium)",
"enterococcus faecium (streptococcus faecium)"
] | [
"clostridium faecium",
"brachybacterium faecium",
"enterenecus faecium (candidatus enterenecus faecium)",
"sphingobacterium faecium",
"mesosutterella faecium",
"phascolarctobacterium faecium",
"corynebacterium faecium",
"bacteroides faecium",
"avispirillum faecium (candidatus avispirillum faecium)",... | Given the context 'J Clin Invest 62:480-486, 1978
S. FAECIUM ENDOCARDITIS 249
12.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Abstract
A recombinant phage, SpC3, containing a 17 kb genomic DNA insert representing approximately 60% of the 3' portion of the sheep collagen alpha 2 gene, was evaluated by electron microscopic R loop analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Images
Nucleic Acids Research
Structural organization of a 17 KB segment of the a2 collagen gene: evaluation by R loop mapping Millie P.Schafer, Charles D.Boyd, Paul Tolstoshev and Ronald G.Crystal
Pulmonary Branch, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20205, USA
Received 13 February 1980
ABSTRACT
A recombinant phage, SpC3, containing a 17 kb genomic DNA insert rep
resenting approximately 60% of the 3' portion of the sheep collagen a2 gene, was evaluated by electron microscopic R loop analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The present study further characterizes this portion of the a2
gene by utilizing electron microscopic R loop analysis to map the coding regions (exons) and intervening sequences (introns) contained within the sheep genomic insert of SpC3.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The sheep a2 collagen recombinant clone, SpC3, containing a portion of the sheep a2 gene, was isolated as previously described (2).', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The sheep a2 collagen recombinant clone, SpC3, containing a portion of the sheep a2 gene, was isolated as previously described (2).', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Briefly,
high molecular weight fetal sheep liver DNA was extracted by the method of Blin and Stafford (3), and 15-20 kb DNA fragments, resulting from partial Eco RI digestion, were isolated and ligated to the left and right arms of Charon 4A.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The recombinant DNA was then packaged in vitro and the sheep
genomic library amplified (4-6).', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Screening of the sheep genomic library was
conducted utilizing [32 P]-labeled fetal sheep tendon type I collagen cDNA and
several positive recombinant phages were isolated.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Screening of the sheep genomic library was
conducted utilizing [32 P]-labeled fetal sheep tendon type I collagen cDNA and
several positive recombinant phages were isolated.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'One recombinant, containing a 17 kb sheep genomic insert, was demonstrated to have coding sequences corresponding to 60% of the 3' end of a2 mRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The construction and screening of the sheep genomic library together with amplification of pCg45 and preparation of high titre lysates of chimaeric
Charon 4A were performed under the physical and biological containment levels specified by the NIH guidelines for recombinant DNA research (11).
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Hybridization of fetal sheep tendon type I collagen mRNA to SpC3 DNA
yielded a complex R loop pattern in the region where the sheep genomic insert was expected to be ligated to the arms of the lambda vector, Charon 4A.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Hybridization of fetal sheep tendon type I collagen mRNA to SpC3 DNA
yielded a complex R loop pattern in the region where the sheep genomic insert was expected to be ligated to the arms of the lambda vector, Charon 4A.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'To
confirm that these hybridization events were restricted to the inserted sheep DNA fragment, duplex DNA strands on both sides of this hybridization area were measured.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Although, by convention, introns are usually sequentially labeled 5' to 3', an opposite order had to be employed in this case as SpC3 does not contain the sequences coding for the 5' end of sheep a2 mRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'A small non-hybridized tail was consistently found in the region where
the right arm of the phage was ligated to the sheep genomic insert (Figure 1).', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Electron microscopic visualization of all 17 introns and 18 exons
from hybrid molecules formed between recombinant clone SpC3 DNA and fetal sheep
tendon a2 mRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Electron microscopic R loop analysis
present in SpC3 DNA1.
of the sheep a2 introns
SpC3 was hybridized to sheep a2 mRNA as described in Materials and Methods; intron lengths were determined by comparison with *X-174 DNA lengths.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Electron microscopic R loop analysis
present in SpC3 DNA1.
of the sheep a2 introns
SpC3 was hybridized to sheep a2 mRNA as described in Materials and Methods; intron lengths were determined by comparison with *X-174 DNA lengths.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Electron microscopic R loop analysis of the sheep a2 exons
present in SpC3 DNA1.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context '36 q5 - _ 33 130?47 r5 r 6 78?36
SpC3 was hybridized to sheep a2 mRNA as described in M4aterials and
Methods; exon lengths were determined by comparison with pBR322 DNA lengths.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The largest exon, "a", located on the extreme 3' end of the sheep genomic insert, contained
approximately 800 bp.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Exon "a" and exon "b", the two exons situated on either side of intron 1, coded for around 1000 bases of a2 collagen information; these two
exons contained one-third of the mapped 3,014 DNA bases complementary to a2 mRNA Length distribution and organization of the introns and exons in the sheep genomi c i nsert.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Therefore, only 18% of the mapped 17 kb sheep genetic insert actually contained a2 structural information.
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'A minimum of 17 introns interrupt the 3 kb of ca2 genetic information interspersed as 18 exons over 17 kb of sheep DNA.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Although the total number of introns present within the 60% 3' portion
of the a2 sheep gene was determined to be 17, variation in the precise number
TRANSRIPTlO
', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context '5.5 50 4.5 4.0 3.5 3.0 2.5 2.0 1.5 1.0
KILOBASE
Fiue3 Organization of 60% of the 3' end of the sheep a2 collagen gene.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'Very small introns have been reported for tRNA genes (12,13),
and it will be necessary to sequence these regions of SpC3 to determine if such introns are present within the a2 sheep genome.
', answer the user's query. |
What is the biomedical concept corresponding to 'adenovirus'? | [
"adenoviridae"
] | [
"adenovirus (unidentified adenovirus)",
"adenovirus sp.",
"unidentified adenovirus (adenovirus)",
"human adenovirus (human adenovirus sp.)",
"adeno-associated virus",
"rodent adenovirus",
"human adenovirus sp. (human adenovirus)",
"adeno-associated virus clade d",
"adenovirus 1 (human adenovirus 1)"... | Given the context 'The existence of mRNAs comprised of sequences complementary to noncontiguous regions in a DNA genome was first described for adenovirus (14,15) and
simian virus (16,17) genes.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'The consistent appearance of a small non-hybridized tail, approximately 100 nucleotides in length, in the region where the right arm of the phage was ligated to the sheep genomic insert of SpC3 very likely corresponded to the
3' poly A sequence of the a2 mRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'We are also grateful to Margery Sullivan, Laboratory of Molecular Genetics,
National Institute of Child Health and Human Development, for helpful discussions and to Dr. Helga Boedtker, Department of Chemistry, Harvard University, for making available the recombinant plasmid pCg45.
', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Scp160p, a multiple KH-domain protein, is a component of mRNP complexes in yeast
Abstract
Scp160p is a 160 kDa protein in the yeast Saccharomyces cerevisiae that contains 14 repeats of the hnRNP K-homology (KH) domain, and demonstrates significant sequence homology to a family of proteins collectively known as vigilins.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Scp160p, a multiple KH-domain protein, is a component of mRNP complexes in yeast
Abstract
Scp160p is a 160 kDa protein in the yeast Saccharomyces cerevisiae that contains 14 repeats of the hnRNP K-homology (KH) domain, and demonstrates significant sequence homology to a family of proteins collectively known as vigilins.', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces sp.",
"saccharomyces cerevisiae x saccharomyces mikatae",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae fleischmann... | Given the context 'Scp160p, a multiple KH-domain protein, is a component of mRNP complexes in yeast
Abstract
Scp160p is a 160 kDa protein in the yeast Saccharomyces cerevisiae that contains 14 repeats of the hnRNP K-homology (KH) domain, and demonstrates significant sequence homology to a family of proteins collectively known as vigilins.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'These results demonstrate that Scp160p associates with polyribosome-bound mRNP complexes in vivo, implicating a role for this protein in one or more levels of mRNA metabolism in yeast.
', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces sp.",
"saccharomyces cerevisiae x saccharomyces mikatae",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae fleischmann... | Given the context 'INTRODUCTION
Scp160p is a 1222 amino acid Saccharomyces cerevisiae protein that contains 14 copies of the hnRNP K homology (KH) domain, a highly conserved motif found in many proteins involved in RNA metabolism (1).', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'KH domain-containing proteins appear to have diverse functions and have been identified in all kingdoms of life, including the ribosomal protein S3 from Escherichia coli (1), Mer1p from S.cerevisiae, a meiosis-specific splicing factor (1), MEX-3 from Caenorhabditis elegans, presumably involved in mRNA localization during development (2), and FMRP, the fragile-X mental retardation protein in humans (3).', answer the user's query. |
What is the biomedical concept corresponding to 's.cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces cerevisiae fleischmanns baking yeast",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae x saccharomyces mikatae",
"sac... | Given the context 'KH domain-containing proteins appear to have diverse functions and have been identified in all kingdoms of life, including the ribosomal protein S3 from Escherichia coli (1), Mer1p from S.cerevisiae, a meiosis-specific splicing factor (1), MEX-3 from Caenorhabditis elegans, presumably involved in mRNA localization during development (2), and FMRP, the fragile-X mental retardation protein in humans (3).', answer the user's query. |
What is the biomedical concept corresponding to 'caenorhabditis elegans'? | [
"caenorhabditis elegans (rhabditis elegans)",
"rhabditis elegans (caenorhabditis elegans)"
] | [
"elegans subgroup (in: flies)",
"caenorhabditis sp.",
"drosophila elegans",
"caenorhabditis",
"cyclostrongylus elegans",
"polyzonia elegans",
"elegans subgroup (in: mosquitos)",
"enyo elegans (zodarion elegans)",
"uronema elegans",
"zodarion elegans (enyo elegans)"
] | Given the context 'KH domain-containing proteins appear to have diverse functions and have been identified in all kingdoms of life, including the ribosomal protein S3 from Escherichia coli (1), Mer1p from S.cerevisiae, a meiosis-specific splicing factor (1), MEX-3 from Caenorhabditis elegans, presumably involved in mRNA localization during development (2), and FMRP, the fragile-X mental retardation protein in humans (3).', answer the user's query. |
What is the biomedical concept corresponding to 'humans'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"primate (primates)",
"ape (hominoidea) (hominoidea)",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)",
"great apes (hominidae)"
] | Given the context 'KH domain-containing proteins appear to have diverse functions and have been identified in all kingdoms of life, including the ribosomal protein S3 from Escherichia coli (1), Mer1p from S.cerevisiae, a meiosis-specific splicing factor (1), MEX-3 from Caenorhabditis elegans, presumably involved in mRNA localization during development (2), and FMRP, the fragile-X mental retardation protein in humans (3).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Deletion of the SCP160 locus in yeast is not lethal, but results in a complex phenotype, including increased DNA content per cell, missegregation of genetic markers during sporulation, and abnormal cell morphology, including increased size and irregular shape (4).', answer the user's query. |
What is the biomedical concept corresponding to 'chicken'? | [
"chicken (gallus gallus)",
"chickens (gallus gallus)",
"gallus gallus (gallus gallus domesticus)",
"gallus domesticus (gallus gallus)",
"gallus gallus domesticus (gallus gallus)",
"phasianus gallus (gallus gallus)"
] | [
"gallus",
"gallus sp.",
"galliformes (landfowls)",
"landfowls (galliformes)",
"gallasellus",
"gallio",
"miletus gallus gallus",
"gallacoccus",
"gallus gallus gallus (gallus gallus philippensis)",
"arilus gallus"
] | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'xenopus laevis'? | [
"xenopus laevis (african clawed frog)",
"african clawed frog (xenopus laevis)",
"common platanna (xenopus laevis)",
"platanna (xenopus laevis)",
"clawed frog (xenopus laevis)",
"bufo laevis (xenopus laevis)"
] | [
"xenopus laevis laevis (bufo laevis laevis)",
"xenopus (xenopus <genus>)",
"xenopus (xenopus <subgenus>)",
"megalothorax laevis",
"xenopus <genus> (xenopus)",
"anabolia laevis",
"amphibolia laevis",
"xenopus <subgenus> (xenopus)",
"alsophylax laevis",
"xenopus sp. (clawed frog)"
] | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'drosophila melanogaster'? | [
"fruit fly (drosophila melanogaster)",
"drosophila melanogaster (sophophora melanogaster)"
] | [
"melanogaster (melanogaster <basidiomycete fungi>)",
"melanogaster (melanogaster <flies>)",
"melanogaster <basidiomycete fungi> (melanogaster)",
"melanogaster <flies> (melanogaster)",
"drosophila (drosophila <basidiomycete fungi>)",
"drosophila <basidiomycete fungi> (drosophila)",
"drosophila (drosophil... | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'c.elegans'? | [
"caenorhabditis elegans (rhabditis elegans)",
"rhabditis elegans (caenorhabditis elegans)"
] | [
"elegans subgroup (in: flies)",
"drosophila elegans",
"theocolax elegans",
"cyclostrongylus elegans",
"polyzonia elegans",
"actinomucor elegans var. elegans",
"elegans subgroup (in: mosquitos)",
"bactris elegans",
"sipha elegans",
"urocitellus elegans elegans (spermophilus elegans elegans)"
] | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'schizosaccharomyces pombe'? | [
"fission yeast (schizosaccharomyces pombe)",
"schizosaccharomyces pombe (schizosaccharomyces malidevorans)"
] | [
"schizosaccharomyces",
"schizosaccharomyces sp.",
"fission yeasts (schizosaccharomycetaceae)",
"schizosaccharomyces kambucha x schizosaccharomyces pombe",
"schizosaccharomyces pombe oy26",
"schizosaccharomyces pombe strain spy73 975 h+",
"schizosaccharomycetes (archiascomycota)",
"zygosaccharomyces sp... | Given the context 'First identified in chicken, vigilin homologues have now been found in human (6), Xenopus laevis (7), Drosophila melanogaster (8), C.elegans (5) and Schizosaccharomyces pombe.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'For example, Kruse and colleagues reported from their work with human cells in culture that vigilin may be involved in the binding and transport of tRNA (9–11).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The goal of the present study was to begin elucidating the function of Scp160p in yeast by characterizing the subcellular distribution and macromolecular interactions of this protein.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'These results indicate a role for Scp160p in mRNA metabolism in yeast, and by extension, support results seen with Xenopus vigilin in its interactions with mRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To our knowledge, the data reported here demonstrate Scp160p to be the first example of a KH-domain protein that functions as a component of polyribosome-associated mRNP complexes in the yeast, S.cerevisiae.
MATERIALS AND METHODS
Plasmids, yeast strains and culture conditions
All recombinant DNA manipulations were performed according to standard techniques and utilized E.coli strain XL1-Blue (Stratagene).', answer the user's query. |
What is the biomedical concept corresponding to 's.cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces cerevisiae fleischmanns baking yeast",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae x saccharomyces mikatae",
"sac... | Given the context 'To our knowledge, the data reported here demonstrate Scp160p to be the first example of a KH-domain protein that functions as a component of polyribosome-associated mRNP complexes in the yeast, S.cerevisiae.
MATERIALS AND METHODS
Plasmids, yeast strains and culture conditions
All recombinant DNA manipulations were performed according to standard techniques and utilized E.coli strain XL1-Blue (Stratagene).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To our knowledge, the data reported here demonstrate Scp160p to be the first example of a KH-domain protein that functions as a component of polyribosome-associated mRNP complexes in the yeast, S.cerevisiae.
MATERIALS AND METHODS
Plasmids, yeast strains and culture conditions
All recombinant DNA manipulations were performed according to standard techniques and utilized E.coli strain XL1-Blue (Stratagene).', answer the user's query. |
What is the biomedical concept corresponding to 'e.coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"colimonas (candidatus colimonas)",
"unspecified coliform bacterium",
"escherichia coli c",
"escherichia coli 1a",
"escherichia coli 9.1796",
"colibacter",
"escherichia coli (strain b) (escherichia coli b)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'To our knowledge, the data reported here demonstrate Scp160p to be the first example of a KH-domain protein that functions as a component of polyribosome-associated mRNP complexes in the yeast, S.cerevisiae.
MATERIALS AND METHODS
Plasmids, yeast strains and culture conditions
All recombinant DNA manipulations were performed according to standard techniques and utilized E.coli strain XL1-Blue (Stratagene).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The yeast strain JFy1511, expressing FLAG–Scp160p, was derived by two-step gene replacement from strain yJJ52 (MATα gal7Δ102 ura3-52 trp1-289 ade1 lys1 leu2-3, 112; generously donated by Drs Mark Parthun and Judith Jaehning, University of Colorado Health Sciences Center), and confirmed by PCR.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The N-terminally HA-tagged allele of BFR1 was generated by PCR-amplifiction of the BFR1 locus from wild-type (W303) yeast genomic DNA using the primers BFR1HAF1 (5′-CCGCGGATCCATGTACC-CATACGACGTCCCAGACTACGCTATGTCCTCCCAAC-AACACAA-3′) and BFR1HINDR1 (5′-CCGCAAGCTTGTCG-ACTATTTCATATGCCACAGGAAACAG-3′), and subcloned into YIPlac211.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Finally, the HA–BFR1 allele was substituted into the yeast genome in place of the native allele using linearization with SphI and standard two-step gene replacement techniques.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'All yeast transformations and culture manipulations were performed according to standard protocols as described elsewhere (19).
', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Confirmation of genomic integrations
All genomic integrations were confirmed by PCR amplifications from purified yeast genomic DNA.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'In brief, a 100 ml culture of yeast was grown in either YEPD or Hartwell synthetic medium, to early-log phase (OD600 = 1.0), at which time cyclohexamide (Sigma) was added directly to the culture to a final concentration of 100 µg/ml.', answer the user's query. |
What is the biomedical concept corresponding to 'bovine'? | [
"bovine (bos taurus)",
"bos bovis (bos taurus)",
"cow (bos taurus) (bos taurus)",
"domestic cattle (bos taurus)",
"domestic cow (bos taurus)",
"bos taurus (bos primigenius taurus)",
"bos primigenius taurus (bos taurus)",
"ox (bos taurus) (bos taurus)",
"dairy cow (bos taurus)"
] | [
"cattle (bos)",
"bos (cattle)",
"bovidae",
"bos taurus indicus (bos indicus)",
"boveria",
"bos sp.",
"bos indicus (bos primigenius indicus)",
"bos primigenius indicus (bos indicus)",
"bos taurus x bos indicus (bos indicus x bos taurus)",
"beefalo (bos taurus x bison bison)"
] | Given the context 'The column had been calibrated previously using the following molecular weight standards (Sigma): blue dextran (2000 kDa), thyroglobulin (669 kDa), apoferritin (443 kDa), alcohol dehydrogenase (150 kDa), and bovine serum albumin (66 kDa).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Yeast were lysed as described for polyribosome analysis, with an additional clarification by passage through a 0.2 µm syringe-tip filter (Acrodisc) and run over the column at a rate of 0.5 ml/min in polyribosome lysis buffer following treatment with the indicated reagents.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'α-FLAG affinity chromatography
For most experiments, one liter yeast cultures were grown to early log-phase and harvested by centrifugation.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mice (mus sp.) (mus sp.)",
"mus musculus musculus (eastern european house mouse)",
"eastern european house mouse (mus musculus musculus)",
"western european house mouse (mus musculus domesticus)",
"mus sp. ... | Given the context 'FLAG–Scp160p fusion protein was detected by incubation of the filter with mouse M2 anti-FLAG monoclonal antibody (10 µg/ml final concentration), followed by HRP-conjugated sheep anti-mouse secondary antibody (Amersham), diluted 1:5000 as per the manufacturer’s instructions, and ECL reagent (Amersham), followed by exposure to X-ray film.', answer the user's query. |
What is the biomedical concept corresponding to 'sheep'? | [
"sheep (ovis aries)",
"domestic sheep (ovis aries)",
"wild sheep (ovis aries)",
"lambs (ovis aries)",
"ovis ovis (ovis aries)",
"ovis ammon aries (ovis aries)",
"ovis aries (ovis orientalis aries)"
] | [
"ovis sp.",
"ovis",
"ovis aries vignei (ovis vignei)",
"ovis nivicola (ovis canadensis nivicola)",
"ovis dalli (dall's sheep)",
"dall sheep (ovis dalli)",
"ovis canadensis x ovis aries (ovis canadensis x aries)",
"ovis canadensis canadensis",
"snow sheep (ovis nivicola)",
"ovis vignei (ovis orient... | Given the context 'FLAG–Scp160p fusion protein was detected by incubation of the filter with mouse M2 anti-FLAG monoclonal antibody (10 µg/ml final concentration), followed by HRP-conjugated sheep anti-mouse secondary antibody (Amersham), diluted 1:5000 as per the manufacturer’s instructions, and ECL reagent (Amersham), followed by exposure to X-ray film.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mice (mus sp.) (mus sp.)",
"mus musculus musculus (eastern european house mouse)",
"eastern european house mouse (mus musculus musculus)",
"western european house mouse (mus musculus domesticus)",
"mus sp. ... | Given the context 'FLAG–Scp160p fusion protein was detected by incubation of the filter with mouse M2 anti-FLAG monoclonal antibody (10 µg/ml final concentration), followed by HRP-conjugated sheep anti-mouse secondary antibody (Amersham), diluted 1:5000 as per the manufacturer’s instructions, and ECL reagent (Amersham), followed by exposure to X-ray film.', answer the user's query. |
What is the biomedical concept corresponding to 'bovine'? | [
"bovine (bos taurus)",
"bos bovis (bos taurus)",
"cow (bos taurus) (bos taurus)",
"domestic cattle (bos taurus)",
"domestic cow (bos taurus)",
"bos taurus (bos primigenius taurus)",
"bos primigenius taurus (bos taurus)",
"ox (bos taurus) (bos taurus)",
"dairy cow (bos taurus)"
] | [
"cattle (bos)",
"bos (cattle)",
"bovidae",
"bos taurus indicus (bos indicus)",
"boveria",
"bos sp.",
"bos indicus (bos primigenius indicus)",
"bos primigenius indicus (bos indicus)",
"bos taurus x bos indicus (bos indicus x bos taurus)",
"beefalo (bos taurus x bison bison)"
] | Given the context 'By performing a standard analysis using bovine serum albumin, the stain was able to detect ~15 ng total protein per lane.
', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'RESULTS
Expression of tagged Scp160p in yeast
An N-terminal FLAG-tagged form of Scp160p was created to facilitate detection of the protein in cells and extracts (Fig. 1A).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To probe functionality of this fusion protein, we used two-step gene replacement (18) to substitute the modified allele into the SCP160 locus of haploid yeast, and then tested the morphological phenotype of the resultant cells.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'In all cases, yeast expressing tagged Scp160p in place of the native protein appeared indistinguishable from the corresponding wild-type strains (data not shown).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'As a negative control, we also deleted almost the entire SCP160 coding region from the genomes of these yeast strains (Fig. 1A), and confirmed the expected mutant phenotype (data not shown).
', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Scp160p associates with polyribosomes
To test the hypothesis that Scp160p associates with polyribosomes we used sucrose gradient ultracentrifugation to size-fractionate subcellular components of lysates prepared from yeast expressing the N-terminal FLAG-tagged Scp160p protein.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'A convenient internal control for these gradients was provided by an unknown endogenous yeast cross-reacting protein at ~100 kDa, that exemplified the migration pattern of a free protein, appearing only in the upper fractions of the gradient (Fig.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To determine whether the migration pattern of Scp160p in these sucrose gradients truly reflected association with yeast polyribosomes, lysates were pre-treated with either 30 mM EDTA or 50 U/ml', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The fact that RNase treatment and high salt both generated Scp160p species of similar apparent molecular weight suggests that these high salt concentrations resulted in the disassociation of RNA, and perhaps other components, from Scp160p.
Pab1p and Bfr1p are present in EDTA-resistant Scp160p-containing complexes
To determine if the >1300 kDa Scp160p-containing complexes remaining after EDTA treatment were mRNPs, we assayed for the presence of the yeast poly(A) binding protein, Pab1p, following α-FLAG affinity purification as illustrated in Figure 4. Pab1p is an abundant and well-characterized component of mRNP complexes in yeast, as well as higher eukaryotes (14,15,25).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The fact that RNase treatment and high salt both generated Scp160p species of similar apparent molecular weight suggests that these high salt concentrations resulted in the disassociation of RNA, and perhaps other components, from Scp160p.
Pab1p and Bfr1p are present in EDTA-resistant Scp160p-containing complexes
To determine if the >1300 kDa Scp160p-containing complexes remaining after EDTA treatment were mRNPs, we assayed for the presence of the yeast poly(A) binding protein, Pab1p, following α-FLAG affinity purification as illustrated in Figure 4. Pab1p is an abundant and well-characterized component of mRNP complexes in yeast, as well as higher eukaryotes (14,15,25).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'In addition, we performed mock purifications using lysates from yeast expressing the wild-type allele of SCP160 without the FLAG epitope (Fig. 5F), or with an unrelated FLAG-tagged protein, human galactose 1-phosphate uridylyltransferase (GALT) (Fig.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'In addition, we performed mock purifications using lysates from yeast expressing the wild-type allele of SCP160 without the FLAG epitope (Fig. 5F), or with an unrelated FLAG-tagged protein, human galactose 1-phosphate uridylyltransferase (GALT) (Fig.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Monomeric Scp160p migrates as a ~450 kDa protein under native conditions
As a first step to characterize the post RNase/NaCl 450 kDa Scp160p species we compared it with Scp160p over-expressed and purified from an exogenous host, the yeast Pichia pastoris.', answer the user's query. |
What is the biomedical concept corresponding to 'pichia pastoris'? | [
"pichia pastoris (komagataella pastoris)",
"zygosaccharomyces pastoris (komagataella pastoris)",
"komagataella pastoris (zygosaccharomyces pastoris)"
] | [
"pichia pastoris dsmz 70382 (komagataella pastoris dsmz 70382)",
"saccharomyces pastorianus (saccharomyces carlsbergensis)",
"lager yeast (saccharomyces pastorianus)",
"komagataella pastoris dsmz 70382 (pichia pastoris dsmz 70382)",
"saccharomyces carlsbergensis (saccharomyces pastorianus)",
"saccharomyce... | Given the context 'Monomeric Scp160p migrates as a ~450 kDa protein under native conditions
As a first step to characterize the post RNase/NaCl 450 kDa Scp160p species we compared it with Scp160p over-expressed and purified from an exogenous host, the yeast Pichia pastoris.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To test this hypothesis, yeast expressing FLAG–Scp160p were transfected with a centromeric plasmid, YCplac22–HA–Scp160p, encoding a distinct, HA-tagged allele of the protein.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'As seen in Figure 7C, when yeast co-expressing the two alleles were lysed and the FLAG-tagged protein was isolated as described above, no HA–Scp160p co-purified with the FLAG–Scp160p.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The data presented here demonstrate two main points regarding the biochemical associations and function of Scp160p in yeast.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Furthermore, by utilizing yeast co-expressing two distinct epitope-tagged versions of Scp160p, we have ruled out the possibility of self-association of Scp160p.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'In conclusion we have shown convincing evidence that Scp160p exists in yeast cytoplasmic extracts primarily associated with polyribosomes.', answer the user's query. |
What is the biomedical concept corresponding to 's.cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces cerevisiae fleischmanns baking yeast",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae x saccharomyces mikatae",
"sac... | Given the context 'The presence of Pab1p suggests that Scp160p associates with polyribosomes as a component of an mRNP, demonstrating Scp160p to be the first S.cerevisiae multiple-KH domain protein characterized to function in this way.
', answer the user's query. |
What is the biomedical concept corresponding to 'rainbow trout'? | [
"rainbow trout (oncorhynchus mykiss)",
"salmo mykiss (oncorhynchus mykiss)"
] | [
"river trout (salmo trutta)",
"sea trout (salmo trutta trutta)",
"rv-brown trout",
"salmon trout (oncorhynchus masou)",
"salmo trutta (river trout)",
"river trout (salmo trutta fario)",
"gila trout (oncorhynchus gilae)",
"salmo trutta trutta (sea trout)",
"trouts, salmons & chars (salmoninae)",
"g... | Given the context 'Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling
Abstract
Background
Whirling disease, caused by the pathogen Myxobolus cerebralis, afflicts several salmonid species.', answer the user's query. |
What is the biomedical concept corresponding to 'myxobolus cerebralis'? | [
"myxobolus cerebralis"
] | [
"henneguya cerebralis",
"microsporidium cerebralis",
"myxococcus cerebriformis (archangium gephyra)",
"tylodelphys cerebralis",
"myxobolus encephalicus (lentospora encephalica)",
"coniophora cerebella",
"morococcus cerebrosus",
"lentospora encephalica (myxobolus encephalicus)",
"chondrococcus cerebr... | Given the context 'Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling
Abstract
Background
Whirling disease, caused by the pathogen Myxobolus cerebralis, afflicts several salmonid species.', answer the user's query. |
What is the biomedical concept corresponding to 'rainbow trout'? | [
"rainbow trout (oncorhynchus mykiss)",
"salmo mykiss (oncorhynchus mykiss)"
] | [
"river trout (salmo trutta)",
"sea trout (salmo trutta trutta)",
"rv-brown trout",
"salmon trout (oncorhynchus masou)",
"salmo trutta (river trout)",
"river trout (salmo trutta fario)",
"gila trout (oncorhynchus gilae)",
"salmo trutta trutta (sea trout)",
"trouts, salmons & chars (salmoninae)",
"g... | Given the context 'Rainbow trout are particularly susceptible and may suffer high mortality rates.', answer the user's query. |
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