query stringlengths 53 100 | positive listlengths 1 10 | negative listlengths 4 10 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"paraphaeosphaeria oryzae",
"phaeosphaeria oryzae (trematosphaerella oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"pleospora oryzae (phaeosphaeria oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"phaeoseptoria oryzae (phaeosphaeria oryzae)",
... | Given the context 'The transporter diversity of Magnaporthe oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"paraphaeosphaeria oryzae",
"phaeosphaeria oryzae (trematosphaerella oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"pleospora oryzae (phaeosphaeria oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"phaeoseptoria oryzae (phaeosphaeria oryzae)",
... | Given the context 'The genome of Magnaporthe oryzae contains four TRK, one HAK, and two ACU genes.', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"japanese rice (oryza sativa japonica group)",
"oryzopsis (ricegrass)",
"ricegrass (oryzopsis)",
"long-grained rice (oryza sativa indica group)",
"indian rice (oryza sativa indica group)",
"oryza",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) (oryza sativa indica group)"... | Given the context 'The study of the expression of these genes at high K(+), K(+) starvation, and in infected rice leaves revealed that the expression of four genes, ACU1, ACU2, HAK1, and TRK1 is much lower than that of TRK2, TRK3, and TRK4, except under K(+) starvation.', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces sp.",
"saccharomyces cerevisiae x saccharomyces mikatae",
"saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus)",
"saccharomyces cerevisiae fleischmann... | Given the context 'These two ATPases endow Saccharomyces cerevisiae with the capacity to grow for several generations in low Na(+) concentrations when K(+) was absent, which produces a dramatic increase of cellular Na(+)/K(+) ratio.
', answer the user's query. |
What is the biomedical concept corresponding to 'lactococcus lactis'? | [
"lactococcus lactis (streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980))",
"streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980) (lactococcus lactis)",
"lactobacillus xylosus (lactococcus lactis)"
] | [
"lactococcus lactis lactis (lactococcus lactis subsp. lactis)",
"lactococcus lactis (subsp. lactis) (lactococcus lactis subsp. lactis)",
"streptococcus lactis subsp. lactis (lactococcus lactis subsp. lactis)",
"lactococcus lactis subsp. lactis (\"lactococcus lactis subsp. diacitilactis (sic)\" (garvie and far... | Given the context 'Citrate uptake in exchange with intermediates in the citrate metabolic pathway in Lactococcus lactis IL1403.
', answer the user's query. |
What is the biomedical concept corresponding to 'lactococcus lactis'? | [
"lactococcus lactis (streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980))",
"streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980) (lactococcus lactis)",
"lactobacillus xylosus (lactococcus lactis)"
] | [
"lactococcus lactis lactis (lactococcus lactis subsp. lactis)",
"lactococcus lactis (subsp. lactis) (lactococcus lactis subsp. lactis)",
"streptococcus lactis subsp. lactis (lactococcus lactis subsp. lactis)",
"lactococcus lactis subsp. lactis (\"lactococcus lactis subsp. diacitilactis (sic)\" (garvie and far... | Given the context 'Carbohydrate/citrate cometabolism in Lactococcus lactis results in the formation of the flavor compound acetoin.', answer the user's query. |
What is the biomedical concept corresponding to 'l. lactis'? | [
"streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980) (lactococcus lactis)",
"lactococcus lactis (streptococcus lactis (lister 1873) lohnis 1909 (approved lists 1980))",
"lactobacillus xylosus (lactococcus lactis)"
] | [
"lactococcus lactis lactis (lactococcus lactis subsp. lactis)",
"lactococcus lactis (subsp. lactis) (lactococcus lactis subsp. lactis)",
"lactobacillus lactis (lactobacillus delbrueckii subsp. lactis)",
"bacterium lactis acidi (lactobacillus delbrueckii subsp. lactis)",
"lactobacillus delbrueckii subsp. lac... | Given the context 'It follows that citrate metabolism in L. lactis IL1403(pFL3) splits up in two routes after the formation of pyruvate, one the well-characterized route yielding acetoin and the other a new route yielding acetate.', answer the user's query. |
What is the biomedical concept corresponding to 'bombus terrestris'? | [
"bombus terrestris (large earth bumblebee)",
"large earth bumblebee (bombus terrestris)",
"apis terrestris (bombus terrestris)",
"buff-tailed bumblebee (bombus terrestris)"
] | [
"bombus terrestris terrestris (apis terrestris terrestris)",
"apis terrestris terrestris (bombus terrestris terrestris)",
"bombus terrestris africanus",
"bombus (bombus <genus>)",
"bombus (bombus <subgenus>)",
"bombus xanthopus (bombus terrestris xanthopus)",
"bombus <genus> (bumble bees)",
"bombus te... | Given the context 'Pathways to immunity: temporal dynamics of the bumblebee (Bombus terrestris) immune response against a trypanosomal gut parasite.
', answer the user's query. |
What is the biomedical concept corresponding to 'bombus terrestris'? | [
"bombus terrestris (large earth bumblebee)",
"large earth bumblebee (bombus terrestris)",
"apis terrestris (bombus terrestris)",
"buff-tailed bumblebee (bombus terrestris)"
] | [
"bombus terrestris terrestris (apis terrestris terrestris)",
"apis terrestris terrestris (bombus terrestris terrestris)",
"bombus terrestris africanus",
"bombus (bombus <genus>)",
"bombus (bombus <subgenus>)",
"bombus xanthopus (bombus terrestris xanthopus)",
"bombus <genus> (bumble bees)",
"bombus te... | Given the context 'Using a gene discovery approach, we have identified genes relating to signalling, enzymatic processes and respiration that were up-regulated in the bumblebee, Bombus terrestris, during infection with the trypanosomatid parasite, Crithidia bombi.', answer the user's query. |
What is the biomedical concept corresponding to 'crithidia bombi'? | [
"crithidia bombi"
] | [
"apicystis bombi",
"gilliamella bombi",
"starmerella bombi (candida bombi)",
"sphaerularia bombi",
"criorhina bomboides",
"tellurirhabdus bombi",
"blastobotrys bombycis",
"candida bombi (starmerella bombi)",
"diplopsalopsis bomba",
"gilliamella bombicola"
] | Given the context 'Using a gene discovery approach, we have identified genes relating to signalling, enzymatic processes and respiration that were up-regulated in the bumblebee, Bombus terrestris, during infection with the trypanosomatid parasite, Crithidia bombi.', answer the user's query. |
What is the biomedical concept corresponding to 'c. bombi'? | [
"crithidia bombi"
] | [
"starmerella bombi (candida bombi)",
"candida bombi (starmerella bombi)",
"sphaerularia bombi",
"candida bombicola (starmerella bombicola)",
"gilliamella bombi",
"starmerella bombicola (candida bombicola)",
"criorhina bomboides",
"blastobotrys bombycis",
"geosmithia bombycina",
"chaetocercus bombu... | Given the context 'In addition, we have mapped dynamic changes in the temporal expression of these genes and three candidate antimicrobial peptide (AMP) immune genes, Abaecin, Defensin and Hymenoptaecin, from 1 to 24 h after C. bombi infection.', answer the user's query. |
What is the biomedical concept corresponding to 'c. bombi'? | [
"crithidia bombi"
] | [
"starmerella bombi (candida bombi)",
"candida bombi (starmerella bombi)",
"sphaerularia bombi",
"candida bombicola (starmerella bombicola)",
"gilliamella bombi",
"starmerella bombicola (candida bombicola)",
"criorhina bomboides",
"blastobotrys bombycis",
"geosmithia bombycina",
"chaetocercus bombu... | Given the context 'We show that dynamic changes in expression occur for individual genes at distinct phases of the immune response to C. bombi that correspond to early, intermediate and late stages of infection.
', answer the user's query. |
What is the biomedical concept corresponding to 'bdellovibrio bacteriovorus'? | [
"bdellovibrio bacteriovorus"
] | [
"bdellovibrio bacteriovorus w",
"bdellovibrionota bacterium",
"bdellovibrionales bacterium",
"bdellovibrionia bacterium",
"bdellovibrio sp. l",
"natronospira bacteriovora",
"bdellovibrionaceae bacterium (pseudobdellovibrionaceae bacterium)",
"bacteriovoracia bacterium",
"bdellovibrio sp. hefner",
... | Given the context 'Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus.
', answer the user's query. |
What is the biomedical concept corresponding to 'bdellovibrio bacteriovorus'? | [
"bdellovibrio bacteriovorus"
] | [
"bdellovibrio bacteriovorus w",
"bdellovibrionota bacterium",
"bdellovibrionales bacterium",
"bdellovibrionia bacterium",
"bdellovibrio sp. l",
"natronospira bacteriovora",
"bdellovibrionaceae bacterium (pseudobdellovibrionaceae bacterium)",
"bacteriovoracia bacterium",
"bdellovibrio sp. hefner",
... | Given the context 'We present a cryo-electron tomographic analysis of the three-dimensional architecture of a strain of the Gram-negative bacterium Bdellovibrio bacteriovorus in which endogenous MreB2 was replaced with monomeric teal fluorescent protein (mTFP)-labeled MreB2.', answer the user's query. |
What is the biomedical concept corresponding to 'vibrio cholerae'? | [
"bacillus cholerae (vibrio cholerae)",
"vibrio cholera (vibrio cholerae)",
"liquidivibrio cholerae (vibrio cholerae)",
"spirillum cholerae (vibrio cholerae)",
"vibrio cholerae (vibrio cholerae biovar albensis)",
"vibrio cholerae-asiaticae (vibrio cholerae)",
"bacillus cholerae-asiaticae (vibrio cholerae... | [
"vibrio cholerae non-o1",
"vibrio cholerae biovar el tor (vibrio cholerae o1 biovar el tor)",
"vibrio cholerae o1 (vibrio cholerae serogroup o1)",
"vibrio cholerae h1 (vibrio cholerae strain h1)",
"vibrio cholerae str. h1 (vibrio cholerae h1)",
"vibrio cholerae strain h1 (vibrio cholerae h1)"
] | Given the context 'The three vibrio cholerae chromosome II-encoded ParE toxins degrade chromosome', answer the user's query. |
What is the biomedical concept corresponding to 'vibrio cholerae'? | [
"bacillus cholerae (vibrio cholerae)",
"vibrio cholera (vibrio cholerae)",
"liquidivibrio cholerae (vibrio cholerae)",
"spirillum cholerae (vibrio cholerae)",
"vibrio cholerae (vibrio cholerae biovar albensis)",
"vibrio cholerae-asiaticae (vibrio cholerae)",
"bacillus cholerae-asiaticae (vibrio cholerae... | [
"vibrio cholerae non-o1",
"vibrio cholerae biovar el tor (vibrio cholerae o1 biovar el tor)",
"vibrio cholerae o1 (vibrio cholerae serogroup o1)",
"vibrio cholerae h1 (vibrio cholerae strain h1)",
"vibrio cholerae str. h1 (vibrio cholerae h1)",
"vibrio cholerae strain h1 (vibrio cholerae h1)"
] | Given the context 'Three homologues of the plasmid RK2 ParDE toxin-antitoxin system are present in the Vibrio cholerae genome within the superintegron on chromosome II.', answer the user's query. |
What is the biomedical concept corresponding to 'v. cholerae'? | [
"bacillus cholerae (vibrio cholerae)",
"vibrio cholera (vibrio cholerae)",
"liquidivibrio cholerae (vibrio cholerae)",
"bacillus cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae (vibrio cholerae biovar albensis)",
"spirillum cholerae (vibrio cholerae... | [
"vibrio cholerae non-o1",
"vibrio cholerae biovar el tor (vibrio cholerae o1 biovar el tor)",
"vibrio cholerae o1 (vibrio cholerae serogroup o1)",
"vibrio cholerae h1 (vibrio cholerae strain h1)",
"vibrio cholerae str. h1 (vibrio cholerae h1)",
"vibrio cholerae serogroup o1 (vibrio cholerae o1)",
"vibri... | Given the context 'ParE-mediated DNA damage activates the V. cholerae SOS response, which in turn likely accounts for ParE's inhibition of cell division.', answer the user's query. |
What is the biomedical concept corresponding to 'v. cholerae'? | [
"bacillus cholerae (vibrio cholerae)",
"vibrio cholera (vibrio cholerae)",
"liquidivibrio cholerae (vibrio cholerae)",
"bacillus cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae (vibrio cholerae biovar albensis)",
"spirillum cholerae (vibrio cholerae... | [
"vibrio cholerae non-o1",
"vibrio cholerae biovar el tor (vibrio cholerae o1 biovar el tor)",
"vibrio cholerae o1 (vibrio cholerae serogroup o1)",
"vibrio cholerae h1 (vibrio cholerae strain h1)",
"vibrio cholerae str. h1 (vibrio cholerae h1)",
"vibrio cholerae serogroup o1 (vibrio cholerae o1)",
"vibri... | Given the context 'Derepression of ParE activity in DeltaparAB2 mutant V. cholerae cells that have lost chromosome II contributes to the prominent DNA degradation that accompanies the death of these cells.', answer the user's query. |
What is the biomedical concept corresponding to 'v. cholerae'? | [
"bacillus cholerae (vibrio cholerae)",
"vibrio cholera (vibrio cholerae)",
"liquidivibrio cholerae (vibrio cholerae)",
"bacillus cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae-asiaticae (vibrio cholerae)",
"vibrio cholerae (vibrio cholerae biovar albensis)",
"spirillum cholerae (vibrio cholerae... | [
"vibrio cholerae non-o1",
"vibrio cholerae biovar el tor (vibrio cholerae o1 biovar el tor)",
"vibrio cholerae o1 (vibrio cholerae serogroup o1)",
"vibrio cholerae h1 (vibrio cholerae strain h1)",
"vibrio cholerae str. h1 (vibrio cholerae h1)",
"vibrio cholerae serogroup o1 (vibrio cholerae o1)",
"vibri... | Given the context 'Thus, the parDE loci aid in the maintenance of the integrity of the V. cholerae superintegron and in ensuring the inheritance of chromosome II.
', answer the user's query. |
What is the biomedical concept corresponding to 'bdellovibrio bacteriovorus'? | [
"bdellovibrio bacteriovorus"
] | [
"bdellovibrio bacteriovorus w",
"bdellovibrionota bacterium",
"bdellovibrionales bacterium",
"bdellovibrionia bacterium",
"bdellovibrio sp. l",
"natronospira bacteriovora",
"bdellovibrionaceae bacterium (pseudobdellovibrionaceae bacterium)",
"bacteriovoracia bacterium",
"bdellovibrio sp. hefner",
... | Given the context 'Three motAB stator gene products in Bdellovibrio bacteriovorus contribute to motility of a single flagellum during predatory and prey-independent growth.
', answer the user's query. |
What is the biomedical concept corresponding to 'bdellovibrio bacteriovorus'? | [
"bdellovibrio bacteriovorus"
] | [
"bdellovibrio bacteriovorus w",
"bdellovibrionota bacterium",
"bdellovibrionales bacterium",
"bdellovibrionia bacterium",
"bdellovibrio sp. l",
"natronospira bacteriovora",
"bdellovibrionaceae bacterium (pseudobdellovibrionaceae bacterium)",
"bacteriovoracia bacterium",
"bdellovibrio sp. hefner",
... | Given the context 'The predatory bacterium Bdellovibrio bacteriovorus uses flagellar motility to locate regions rich in Gram-negative prey bacteria, colliding and attaching to prey and then ceasing flagellar motility.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Mapping functional domains of colicin M.
Colicin M (Cma) lyses Escherichia coli cells by inhibiting murein biosynthesis through hydrolysis of the phosphate ester between C(55)-polyisoprenol and N-acetylmuramyl (MurNAc)-pentapeptide-GlcNAc in the periplasm.', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"japanese rice (oryza sativa japonica group)",
"oryzopsis (ricegrass)",
"ricegrass (oryzopsis)",
"long-grained rice (oryza sativa indica group)",
"indian rice (oryza sativa indica group)",
"oryza",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) (oryza sativa indica group)"... | Given the context 'OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles.
', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"japanese rice (oryza sativa japonica group)",
"oryzopsis (ricegrass)",
"ricegrass (oryzopsis)",
"long-grained rice (oryza sativa indica group)",
"indian rice (oryza sativa indica group)",
"oryza",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) (oryza sativa indica group)"... | Given the context 'The cadmium (Cd) over-accumulating rice (Oryza sativa) cv Cho-Ko-Koku was previously shown to have an enhanced rate of root-to-shoot Cd translocation.', answer the user's query. |
What is the biomedical concept corresponding to 'oryza sativa'? | [
"oryza sativa (asian cultivated rice)",
"rice (oryza sativa) (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"red rice (oryza sativa)"
] | [
"oryza officinalis",
"oryza",
"oryza sativa (indica group) (oryza sativa indica group)",
"oryza sativa aus (oryza sativa aus subgroup)",
"oryza sativa subsp. indica (oryza sativa indica group)",
"oryza sativa subsp. japonica (oryza sativa japonica group)",
"oryza sativa f. spontanea",
"oryzihumus",
... | Given the context 'The cadmium (Cd) over-accumulating rice (Oryza sativa) cv Cho-Ko-Koku was previously shown to have an enhanced rate of root-to-shoot Cd translocation.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'OsHMA3 fused to green fluorescent protein was localized to vacuolar membranes in plants and yeast.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'An OsHMA3 transgene complemented Cd sensitivity in a yeast mutant that lacks the ability to transport Cd into vacuoles.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'By contrast, OsHMA3mc did not complement the Cd sensitivity of this yeast mutant, indicating that the OsHMA3mc transport function was lost.', answer the user's query. |
What is the biomedical concept corresponding to 'rice plants'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"ricegrass (oryzopsis)",
"oryzopsis (ricegrass)",
"ricefishes (oryziinae)",
"long-grained rice (oryza sativa indica group)",
"japanese rice (oryza sativa japonica group)",
"oryza",
"indian rice (oryza sativa indica group)",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) ... | Given the context 'We propose that the root cell cytoplasm of Cd-overaccumulating rice plants has more Cd available for loading into the xylem as a result of the lack of OsHMA3-mediated transportation of Cd to the vacuoles.', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"japanese rice (oryza sativa japonica group)",
"oryzopsis (ricegrass)",
"ricegrass (oryzopsis)",
"long-grained rice (oryza sativa indica group)",
"indian rice (oryza sativa indica group)",
"oryza",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) (oryza sativa indica group)"... | Given the context 'These data demonstrate the importance of vacuolar sequestration for Cd accumulation in rice.
', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella enterica (salmonella enterica ser. choleraesuis)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella choleraesuis (salmonella enterica)"
] | [
"salmonella",
"salmonella sp.",
"salmonella enterica serovar enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enterica subsp. enterica serovar enteritidis (salmonella enterica serovar enter... | Given the context 'FAD binding by ApbE protein from Salmonella enterica: a new class of FAD-binding proteins.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Functional and phylogenetic analysis of ureD in Shiga toxin-producing Escherichia coli.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Enterohemorrhagic Escherichia coli (EHEC) is a food-borne pathogen that can cause severe health complications and utilizes a much lower infectious dose than other E. coli pathotypes.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"colimonas (candidatus colimonas)",
"unspecified coliform bacterium",
"escherichia coli c",
"escherichia coli 1a",
"escherichia coli 9.1796",
"colibacter",
"escherichia coli (strain b) (escherichia coli b)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Enterohemorrhagic Escherichia coli (EHEC) is a food-borne pathogen that can cause severe health complications and utilizes a much lower infectious dose than other E. coli pathotypes.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'Urease activity potentially assists with survival fitness by enhancing acid tolerance during passage through the stomach or by aiding with colonization in either human or animal reservoirs.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"colimonas (candidatus colimonas)",
"unspecified coliform bacterium",
"escherichia coli c",
"escherichia coli 1a",
"escherichia coli 9.1796",
"colibacter",
"escherichia coli (strain b) (escherichia coli b)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Multilocus sequence typing analysis for a variety of Shiga toxin-producing E. coli isolates combined with the ureD sequence reveals that except for a subset of the O157:H7 strains, neither the in vitro urease-positive phenotype nor the ureD sequence is phylogenetically restricted.
', answer the user... |
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