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10.1111_sapm.12544.pdf
D A T A AVA I L A B I L I T Y S T A T E M E N T Data sharing not applicable to this article as no datasets were generated or analyzed during the current study.
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Received: 15 June 2022 Revised: 31 October 2022 Accepted: 2 November 2022 DOI: 10.1111/sapm.12544 O R I G I N A L A R T I C L E Sobolev-orthogonal systems with tridiagonal skew-Hermitian differentiation matrices Arieh Iserles1 Marcus Webb2 1Department of Applied Mathematics and Theoretical Physics, University o...
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10.1073_pnas.2221809120.pdf
Data, Materials, and Software Availability. All study data are included in the article and/or SI Appendix. Sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus, accession num- ber GSE234805 (
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RESEARCH ARTICLE | MEDICAL SCIENCES OPEN ACCESS Proxalutamide reduces SARS- CoV- 2 infection and associated inflammatory response Yuanyuan Qiaoa,b,c,1 Abhijit Paroliaa, Tongchen Hea, Caleb Chenga, Xuhong Caoa, Rui Wanga Qianxiang Zhoug, Liandong Mag, Jonathan Z. Sextond,e,h,i,j, and Arul M. Chinnaiyana,b,c,k,l,2 , C...
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10.3390_bs13010066.pdf
Data Availability Statement: Data supporting the reported results is kept by the first author.
Data Availability Statement: Data supporting the reported results is kept by the first author. Acknowledgments: We would like to thank the visionary, courageous, resourceful research participants, all of whom are engaged in initiatives to transform the lives of individuals and communities. They are the inspiration behi...
Article The Experience of Self-Transcendence in Social Activists Carol Barton 1 and Rona Hart 2,* 1 2 Previously School of Psychology, University of East London, Water Lane, London E15 4LZ, UK School of Psychology, University of Sussex, Falmer, Brighton BN1 9RH, UK * Correspondence: rona.hart@sussex.ac.uk Abstra...
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10.1371_journal.pone.0265477.pdf
Data Availability Statement: The raw data was collected from Taiwan Centers for Disease Control (CDC) and it is available at www.cdc.gov.tw/En. The tool and dataset are publicly available at github. com/mahsaashouri/Taiwan-COVID-19-Interactive- tool.
The raw data was collected from Taiwan Centers for Disease Control (CDC) and it is available at www.cdc.gov.tw/En . The tool and dataset are publicly available at github. com/mahsaashouri/Taiwan
RESEARCH ARTICLE Interactive tool for clustering and forecasting patterns of Taiwan COVID-19 spread Mahsa Ashouri, Frederick Kin Hing PhoaID* Institute of Statistical Science, Academia Sinica, Taipei, Taiwan * fredphoa@stat.sinica.edu.tw Abstract The COVID-19 data analysis is essential for policymakers to analyze...
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10.2196_41005.pdf
Data Availability The deidentified data analyzed in this study are available from the corresponding author upon reasonable request.
Data Availability The deidentified data analyzed in this study are available from the corresponding author upon reasonable request.
JOURNAL OF MEDICAL INTERNET RESEARCH Ghosh et al Original Paper An Unguided, Computerized Cognitive Behavioral Therapy Intervention (TreadWill) in a Lower Middle-Income Country: Pragmatic Randomized Controlled Trial Arka Ghosh1, PhD; Rithwik J Cherian1,2, MSc; Surbhit Wagle1,3, MTech; Parth Sharma4, MTe...
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10.3389/fnbeh.2020.584731
DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.
DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.
fnbeh-14-584731 November 10, 2020 Time: 15:58 # 1 ORIGINAL RESEARCH published: 16 November 2020 doi: 10.3389/fnbeh.2020.584731 Developmental Fluoxetine Exposure Alters Behavior and Neuropeptide Receptors in the Prairie Vole Rebecca H. Lawrence1,2, Michelle C. Palumbo2,3, Sara M. Freeman1,2,4, Caleigh D. Guoynes1,...
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10.1073_pnas.2301852120.pdf
Data, Materials, and Software Availability. Cryo-EM images data have been deposited in Electron Microscopy Public Image Archive (EMPIAR) data- base with accession number EMPIAR-11544 (https://www.ebi.ac.uk/empiar/ EMPIAR-11544/) (41).
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INAUGURAL ARTICLE | BIOPHYSICS AND COMPUTATIONAL BIOLOGY OPEN ACCESS Quantification of gallium cryo-FIB milling damage in biological lamellae Bronwyn A. Lucasa,1,2,3 and Nikolaus Grigorieff a,b,1 This contribution is part of the special series of Inaugural Articles by members of the National Academy of Sciences e...
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10.7554_elife.76554.pdf
Data availability Sequencing data have been deposited in GEO under accession code GSE157681. The following dataset was generated: Author(s) Brown JM, Helsley R, Kadam A, Neumann C Year 2021 Dataset title Dataset URL Database and Identifier The Gut Microbe- Derived Metabolite Trimethylamine is a Biomarker of an...
Data availability Sequencing data have been deposited in GEO under accession code GSE157681. The following dataset was generated:
University of Kentucky University of Kentucky UKnowledge UKnowledge Pediatrics Faculty Publications Pediatrics 1-27-2022 Gut Microbial Trimethylamine Is Elevated in Alcohol-Associated Gut Microbial Trimethylamine Is Elevated in Alcohol-Associated Hepatitis and Contributes to Ethanol-Induced Liver Injury in Mice He...
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10.1088_1758-5090_acfb3c.pdf
Data availability statement The data that support the findings of this study are openly available at the following URL/DOI: www.ncbi.nlm.nih.gov/bioproject/PRJNA953644. The other data that supports the findings of this study are available upon reasonable request.
Data availability statement The data that support the findings of this study are openly available at the following URL/DOI: www.ncbi.nlm.nih.gov/bioproject/PRJNA953644 . The other data that supports the findings of this study are available upon reasonable request.
Biofabrication 15 (2023) 045025 https://doi.org/10.1088/1758-5090/acfb3c Biofabrication PAPER RECEIVED 18 April 2023 REVISED 21 August 2023 ACCEPTED FOR PUBLICATION 19 September 2023 PUBLISHED 27 September 2023 3D bioprinted endothelial cell-microglia coculture for diabetic retinopathy modeling Haixiang Wu1,∗,...
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10.1371_journal.pclm.0000285.pdf
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R code and aggregated data used in climate risk calculations are available at https://github.com/groundfish- climatechange/fish-footprints . Confidential data may be acquired
RESEARCH ARTICLE Stay or go? Geographic variation in risks due to climate change for fishing fleets that adapt in-place or adapt on-the-move Jameal F. SamhouriID Kate RichersonID 7, Lyall BellquistID H. BeaudreauID Abigail Harley11, Chris J. HarveyID Amanda Phillips1,5, Leif K. RasmusonID L. SeldenID 14 1*, Blake E...
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10.1371_journal.pone.0256592.pdf
Data Availability Statement: The data underlying the results presented in this study are from the Centers for Medicare and Medicaid Services and CMS does not permit data sharing as per their legally binding and standard data use agreements. The exact data used in this study can be purchased directly from the Centers fo...
The data underlying the results presented in this study are from the Centers for Medicare and Medicaid Services and CMS does not permit data sharing as per their legally binding and standard data use agreements. The exact data used in this study can be purchased directly from the Centers for Medicare and Medicaid Servi...
RESEARCH ARTICLE A comparison of prediction approaches for identifying prodromal Parkinson disease Mark N. WardenID Brad A. RacetteID 1, Susan Searles Nielsen1, Alejandra Camacho-Soto1, Roman Garnett2, 1,3* 1 Department of Neurology, Washington University School of Medicine, Saint Louis, Missouri, United States of ...
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10.1038/s41467-022-34431-1
Data availability The data that support this study are available from the corresponding author upon reasonable request. The crystal structure described in this study has been deposited in the Protein Data Bank under the accession number 7TD5. The LC-MS/MS data files have been deposited to the Pro- teomeXchange Consortiu...
Data availability The data that support this study are available from the corresponding author upon reasonable request. The crystal structure described in this study has been deposited in the Protein Data Bank under the accession number 7TD5. The LC-MS/MS data files have been deposited to the Pro-teomeXchange Consortiu...
Article https://doi.org/10.1038/s41467-022-34431-1 CK2-mediated phosphorylation of SUZ12 promotes PRC2 function by stabilizing enzyme active site Received: 4 February 2022 Accepted: 25 October 2022 Lihu Gong 1,4, Xiuli Liu1,4, Lianying Jiao1,3,4, Xin Yang1, Andrew Lemoff Xin Liu 1 2 & Check for updates ; , : ) ...
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10.1088_1361-6463_ad0ac1.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
J. Phys. D: Appl. Phys. 57 (2024) 075101 (7pp) Journal of Physics D: Applied Physics https://doi.org/10.1088/1361-6463/ad0ac1 Enhanced performance of AlGaN-based deep-UV LED by incorporating carrier injection balanced modulation layer synergistically with polarization-regulating structures Xun Hu1,2,3, Lijing Kong1...
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10.1186_s12866-020-01881-w.pdf
Availability of data and materials All data generated or analyzed during this study are included in this published article [and its supplementary information files].
Availability of data and materials All data generated or analyzed during this study are included in this published article [and its supplementary information files].
Negrete-González et al. BMC Microbiology (2020) 20:213 https://doi.org/10.1186/s12866-020-01881-w R E S E A R C H A R T I C L E Open Access High prevalence of t895 and t9364 spa types of methicillin-resistant Staphylococcus aureus in a tertiary-care hospital in Mexico: different lineages of clonal complex 5...
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10.1021/jacs.3c00612
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pubs.acs.org/JACS Article Experimental Tests of the Virtual Circular Genome Model for Nonenzymatic RNA Replication Dian Ding, Lijun Zhou, Shriyaa Mittal, and Jack W. Szostak* Cite This: J. Am. Chem. Soc. 2023, 145, 7504−7515 Read Online ACCESS Metrics & More Article Recommendations *sı Supporting Information A...
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10.1016_j.isci.2022.104876.pdf
Data and code availability d Microscopy images published in this paper will be shared by the lead contact upon request. d Original code is uploaded in the supplementary documents and is publicly available as of the date of publication. Section 1: Data All data reported in this paper will be shared by the lead conta...
Materials availability This study did not generate new unique reagents. Data and code availability d Microscopy images published in this paper will be shared by the lead contact upon request. d Original code is uploaded in the supplementary documents and is publicly available as of the date of publication.
iScience ll OPEN ACCESS Article Scale space detector for analyzing spatiotemporal ventricular contractility and nuclear morphogenesis in zebrafish Tanveer Teranikar, Cameron Villarreal, Nabid Salehin, ..., Hung Cao, Cheng–Jen Chuong, Juhyun Lee juhyun.lee@uta.edu Highlights Cardiac defect genes in humans have corr...
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10.1088_1361-6641_acfa1f.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Semicond. Sci. Technol. 38 (2023) 115004 (6pp) Semiconductor Science and Technology https://doi.org/10.1088/1361-6641/acfa1f MISHEMT intrinsic voltage gain under multiple channel output characteristics Bruno Godoy Canales1,∗, Welder Fernandes Perina1, Joao Antonio Martino1, Eddy Simoen2, Uthayasankaran Peralagu...
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10.1371_journal.pone.0232007.pdf
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
All relevant data are within the manuscript and its Supporting Information files.
RESEARCH ARTICLE Common mental disorders prevalence in adolescents: A systematic review and meta- analyses Sara Arau´ jo SilvaID Santos Gonc¸ alves1, Eliane Said Dutra1, Kênia Mara Baiocchi Carvalho1,2 1*, Simoni Urbano Silva2, De´ bora Barbosa Ronca1, Vivian Siqueira 1 Graduate Program in Human Nutrition, Universi...
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10.1007/s13187-021-02114-y
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Data Availability Anonymized data will be made available upon request.
Journal of Cancer Education (2023) 38:292–300 https://doi.org/10.1007/s13187-021-02114-y Using Protection Motivation Theory to Predict Intentions for Breast Cancer Risk Management: Intervention Mechanisms from a Randomized Controlled Trial Claire C. Conley1 · Karen J. Wernli2 · Sarah Knerr3 · Tengfei Li4 · Kathleen L...
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10.3389/fmicb.2019.03155
DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article are made available by the authors, without undue reservation, through Zenodo (doi: 10.5281/zenodo.3582838).
DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article are made available by the authors, without undue reservation, through Zenodo ( doi: 10.5281/zenodo.3582838 ).
fmicb-10-03155 January 13, 2020 Time: 16:53 # 1 ORIGINAL RESEARCH published: 22 January 2020 doi: 10.3389/fmicb.2019.03155 Interacting Temperature, Nutrients and Zooplankton Grazing Control Phytoplankton Size-Abundance Relationships in Eight Swiss Lakes Francesco Pomati1,2*, Jonathan B. Shurin3, Ken H. Andersen4,...
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10.1128_mbio.01039-23.pdf
DATA AVAILABILITY Crystallographic data have been deposited to the RCSB protein data bank (accessions 8FZY, 8FZZ, and 8G0K). Metagenomic sequencing data were previously published (32) and are publicly available at the NCBI sequence read archive (BioProject PRJNA398089). Plasmids and bacterial s...
DATA AVAILABILITY Crystallographic data have been deposited to the RCSB protein data bank (accessions 8FZY, 8FZZ, and 8G0K ). Metagenomic sequencing data were previously published (32) and are publicly available at the NCBI sequence read archive (BioProject PRJNA398089 ). Plasmids and bacterial strains generated in the...
| Bacteriology | Research Article Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales Dustin E. Bosch,1 Romina Abbasian,1 Bishal Parajuli,1 S. Brook Peterson,2,3 Joseph D. Mougous2,3,4 AUTHOR AFFILIATIONS See affilia...
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10.1038_s41467-022-28771-1.pdf
Data availability Data supporting the results of this study are presented within the article and supplementary figures. NGS data are available in the NCBI Sequence Read Archive database (BioProject accession code PRJNA803881). Additional details and data to support the findings of this study are available from the corres...
Data availability Data supporting the results of this study are presented within the article and supplementary figures. NGS data are available in the NCBI Sequence Read Archive database (BioProject accession code PRJNA803881). Additional details and data to support the findings of this study are available from the corr...
ARTICLE https://doi.org/10.1038/s41467-022-28771-1 OPEN Harnessing DSB repair to promote efficient homology-dependent and -independent prime editing Martin Peterka1✉ Burcu Bestas Grzegorz Sienski 1, Jack Barr1, Stijn van de Plassche1, Patricia Mendoza-Garcia 1, Mike Firth3 & Marcello Maresca , Nina Akrap1,4, Songy...
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10.1073_pnas.2301121120.pdf
Data, Materials, and Software Availability. Cryo-EM maps and atomic mod- els for all structures described in this work have been deposited to the Electron Microscopy Data Bank (EMDB) and the Protein Data Bank (PDB), respectively. Accession codes are as follows: PLCβ3  in solution-8EMV and EMD-28266, PLCβ3 in co...
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RESEARCH ARTICLE | BIOCHEMISTRY OPEN ACCESS Gβγ activates PIP2 hydrolysis by recruiting and orienting PLCβ on the membrane surface Maria E. Falzonea,b and Roderick MacKinnona,b,1 Edited by James Hurley, University of California, Berkeley, CA; received January 19, 2023; accepted April 6, 2023 Phospholipase C-βs ...
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10.1103_physrevb.106.235128.pdf
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PHYSICAL REVIEW B 106, 235128 (2022) Thermal critical points from competing singlet formations in fully frustrated bilayer antiferromagnets Lukas Weber ,1,2,* Antoine Yves Dimitri Fache,3 Frédéric Mila ,3 and Stefan Wessel 4 1Center for Computational Quantum Physics, Flatiron Institute, 162 5th Avenue, New York, N...
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10.1371_journal.pntd.0009999.pdf
Data Availability Statement: All relevant data are within the paper and its Supporting Information files.
All relevant data are within the paper and its Supporting Information files.
RESEARCH ARTICLE Multimodal biomarker discovery for active Onchocerca volvulus infection 1*, Emmanuel Njumbe Ediage2, Dirk Van Roosbroeck2, Stijn Van Asten2, Ole LagatieID Ann Verheyen1, Linda Batsa Debrah3, Alex Debrah4, Maurice R. Odiere5, Ruben T’Kindt6, Emmie DumontID 1 Filip Cuyckens2, Lieven J. StuyverID 6, K...
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10.1088_1361-6595_ad05f5.pdf
Data availability statement The data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that sup- port the findings of this study are available upon reasonable request from the authors.
Data availability statement The data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.
Plasma Sources Sci. Technol. 32 (2023) 115006 (10pp) Plasma Sources Science and Technology https://doi.org/10.1088/1361-6595/ad05f5 The breakdown characteristic of porous dielectric discharge based on percolation structure Yuheng Hu, Libo Rao, Feiyu Wu, Kai Chen, Yilong Mao, Yue Chen, Jialei Wang and Hao Wang ∗ ...
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10.1038_s41598-020-79151-y.pdf
Data availability The raw data of the study are available at http://www.natur e.com/srep.
Data availability The raw data of the study are available at http://www.natur e.com/srep . Received: 7 August 2020; Accepted: 1 December 2020
OPEN Longitudinal changes in superficial microvasculature in glaucomatous retinal nerve fiber layer defects after disc hemorrhage Yoko Okamoto, Tadamichi Akagi*, Kenji Suda, Takanori Kameda, Masahiro Miyake, Hanako Ohashi Ikeda, Eri Nakano, Akihito Uji & Akitaka Tsujikawa Glaucoma is a multifactorial optic neuropath...
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10.1038_s41467-022-30736-3.pdf
Data availability The data used in this paper are available at the following url: https://figshare.com/ articles/dataset/Manuscript_Data/16695592. In addition, Source Data are provided with this paper, which can be used to reproduce figures without rerunning analyses. Source data are provided with this paper. Code avail...
Data availability The data used in this paper are available at the following url: https://figshare.com/ articles/dataset/Manuscript_Data/16695592 . In addition, Source Data are provided with this paper, which can be used to reproduce figures without rerunning analyses. Source data are provided with this paper. Code ava...
ARTICLE https://doi.org/10.1038/s41467-022-30736-3 OPEN Stable choice coding in rat frontal orienting fields across model-predicted changes of mind 1, Ahmed El Hady 1,2,4, Emily Jane Dennis 1,4, Alex T. Piet 1,5✉ & J. Tyler Boyd-Meredith 1,3,5✉ Carlos D. Brody ; , : ) ( 0 9 8 7 6 5 4 3 2 1 During decision maki...
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10.1088_1751-8121_ad0b5c.pdf
Data availability statement No new data were created or analysed in this study.
Data availability statement No new data were created or analysed in this study.
J. Phys. A: Math. Theor. 56 (2023) 495205 (37pp) https://doi.org/10.1088/1751-8121/ad0b5c Journal of Physics A: Mathematical and Theoretical On Hamiltonian structures of quasi-Painlevé equations Galina Filipuk1 and Alexander Stokes2,∗ 1 Institute of Mathematics, University of Warsaw, ul. Banacha 2, 02-097 Warsaw...
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10.3390_genes14061231.pdf
Data Availability Statement: Not applicable.
Data Availability Statement: Not applicable. Acknowledgments: The article publishing fees were funded by the University of Oradea.
Article The Use of Xpert MTB/RIF Ultra Testing for Early Diagnosis of Tuberculosis: A Retrospective Study from a Single-Center Database Cristian Sava 1,2 Cristian Phillip Marinău 1,2 and Andreea Bianca Balmos, , Mihaela Sava 2, Ana-Maria Drăgan 1,2, Alin Iuhas 1,2,* 1,2 , Larisa Niulas, 1,2 , 1 Faculty of Medic...
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10.1088_1361-665x_ad1426.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Smart Mater. Struct. 33 (2024) 015032 (11pp) Smart Materials and Structures https://doi.org/10.1088/1361-665X/ad1426 Research on variable stiffness asymmetrical resonant linear piezoelectric actuator based on multi-modal drive Liangguo He and An Qian ∗, Xukang Yue, Haotian Dou, Xinfang Ge, Zhikai Wan School of ...
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10.1038/s41467-022-35202-8
Data availability Data supporting the findings of this manuscript are available from the corresponding author upon request. The source data underlying all figures are available as a Source Data file provided with this paper. Source data are provided with this paper. Code availability All codes used for data analysis may ...
Data availability Data supporting the findings of this manuscript are available from the corresponding author upon request. The source data underlying all figures are available as a Source Data file provided with this paper. Source data are provided with this paper. Code availability All codes used for data analysis ma...
Article https://doi.org/10.1038/s41467-022-35202-8 Membrane-mediated protein interactions drive membrane protein organization Received: 6 July 2022 Accepted: 22 November 2022 Check for updates ; , : ) ( 0 9 8 7 6 5 4 3 2 1 ; , : ) ( 0 9 8 7 6 5 4 3 2 1 Yining Jiang 1,2, Batiste Thienpont3, Vinay Sapuru4,5, Ri...
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10.1371_journal.pgen.1011201.pdf
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The consensus sequence of Spoink as well as the sequences of the six PCR amplicons are available at https://github. com/rpianezza/Dmel-Spoink/tree/main/
RESEARCH ARTICLE Spoink, a LTR retrotransposon, invaded D. melanogaster populations in the 1990s Riccardo PianezzaID Robert KoflerID 1* 1,2☯, Almorò Scarpa1,2☯, Prakash Narayanan3, Sarah Signor3*, 1 Institut fu¨ r Populationsgenetik, Vetmeduni Vienna, Vienna, Austria, 2 Vienna Graduate School of Population Genetic...
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10.1371_journal.pone.0222013.pdf
Data Availability Statement: All relevant data are within the paper and its Supporting Information files.
All relevant data are within the paper and its Supporting Information files.
RESEARCH ARTICLE MicroRNA regulation in colorectal cancer tissue and serum Lukasz Gmerek1,2☯, Kari Martyniak1☯, Karolina Horbacka2, Piotr Krokowicz2, Wojciech Scierski3, Pawel Golusinski4,5, Wojciech Golusinski5, Augusto Schneider6*, Michal M. MasternakID 1,5* 1 College of Medicine, Burnett School of Biomedical Sci...
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10.1007_s00208-022-02489-3.pdf
Data Availability Data sharing not applicable to this article as no data sets were generated or analysed during the current study.
Data Availability Data sharing not applicable to this article as no data sets were generated or analysed during the current study.
Mathematische Annalen https://doi.org/10.1007/s00208-022-02489-3 Mathematische Annalen Time periodic motion of temperature driven compressible fluids Eduard Feireisl1 · Piotr Gwiazda2 · Agnieszka ´Swierczewska-Gwiazda3 Received: 11 April 2022 / Revised: 7 September 2022 / Accepted: 3 October 2022 © The Author(s) 2...
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10.1017_s0260210522000614.pdf
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Review of International Studies (2023), 49: 4, 763–779 doi:10.1017/S0260210522000614 R E S E A R C H A R T I C L E From savages to snowflakes: Race and the enemies of free speech Darcy Leigh* Sussex Law School, School of Law, Politics and Sociology, Freeman Centre, University of Sussex, Brighton, United Kingdom *Co...
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10.1158_1078-0432.ccr-21-3817.pdf
t. The somatic variant calls and normalized RNA-seq intensity data, code, and deidentified clinical data are available here: https://github. com/kbolton-lab/Bolton_OCCC. This will enable all the figures and tables to be re-generated and also provide data for others for future analyses. We will also make the BAMs/FASTQs ...
Data availability The somatic variant calls and normalized RNA-seq intensity data, code, and deidentified clinical data are available here: https://github. com/kbolton-lab/Bolton_OCCC . This will enable all the figures and tables to be re-generated and also provide data for others for future analyses. We will also make...
Washington University School of Medicine Washington University School of Medicine Digital Commons@Becker Digital Commons@Becker 2020-Current year OA Pubs Open Access Publications 11-14-2022 Molecular subclasses of clear cell ovarian carcinoma and their Molecular subclasses of clear cell ovarian carcinoma and their ...
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10.1371_journal.pdig.0000221.pdf
rnal.pdig.0000221 May 15, 2023 1 / 21 PLOS DIGITAL HEALTH protocol approved by the Danish Data Protection Agency. In the paper, we have also had to limit the number of indirect identifiers in cases where there might be a risk of compromising patient privacy (e.g. Tables 1 and 2). Reviewers and others may obtain acces...
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RESEARCH ARTICLE Using the app “Injurymap” to provide exercise rehabilitation for people with acute lateral ankle sprains seen at the Hospital Emergency Department–A mixed-method pilot study Jonas Bak1, Kristian Thorborg2,3,4, Mikkel Bek Clausen2,5, Finn Elkjær Johannsen6,7, Jeanette Wassar Kirk1,8, Thomas BandholmID...
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10.1103_physrevd.107.063005.pdf
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PHYSICAL REVIEW D 107, 063005 (2023) Flavor changing interactions confronted with meson mixing and hadron colliders A. E. Cárcamo Hernández ,1,2,3,* L. Duarte ,4,† A. S. de Jesus ,4,5,‡ S. Kovalenko,2,3,6,§ F. S. Queiroz,3,4,5,∥ C. Siqueira ,7,¶ Y. M. Oviedo-Torres ,8,** and Y. Villamizar 4,5,†† 1Universidad T´e...
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10.1016_j.envres.2023.115368.pdf
Data availability Data will be made available on request.
Data availability Data will be made available on request.
Contents lists available at ScienceDirect Environmental Research journal homepage: www.elsevier.com/locate/envres Effects of pesticide exposure on oxidative stress and DNA methylation urinary biomarkers in Czech adults and children from the CELSPAC-SPECIMEn cohort Tom´aˇs Janoˇs a, Ilse Ottenbros b,c, Lucie Bl´ahov...
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10.1371_journal.pone.0263447.pdf
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
All relevant data are within the manuscript and its Supporting Information files.
RESEARCH ARTICLE Stakeholder perceptions of bird-window collisions Georgia J. RiggsID*, Omkar Joshi, Scott R. Loss Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, Oklahoma, United States of America * georgia.riggs@okstate.edu Abstract Bird-window collisions are a majo...
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10.1038_s41598-021-03032-1.pdf
Data availability All data are available in the manuscript.
Data availability All data are available in the manuscript. Received: 24 May 2021; Accepted: 17 November 2021
OPEN In‑vitro propagation and phytochemical profiling of a highly medicinal and endemic plant species of the Himalayan region (Saussurea costus) Ajmal Khan1, Azhar Hussain Shah2* & Niaz Ali1 Efficient protocols for callus induction and micro propagation of Saussurea costus (Falc.) Lipsch were developed and phytochem...
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10.3201_eid2507.181794.pdf
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RESEARCH Asymptomatic Dengue Virus Infections, Cambodia, 2012–2013 Sowath Ly,1 Camille Fortas,1 Veasna Duong, Tarik Benmarhnia, Anavaj Sakuntabhai, Richard Paul, Rekol Huy, Sopheak Sorn, Kunthy Nguon, Siam Chan, Souv Kimsan, Sivuth Ong, Kim Srorn Kim, Sowathy Buoy, Lim Voeung, Philippe Dussart, Philippe Buchy,1,2 Arn...
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10.1371_journal.pcbi.1008853.pdf
cation. Data Availability Statement: BCI FDP data are available from https://repository.si.edu/handle/ 10088/11. The authors do not own the data and are unable to share it in a public repository, as the majority of the data is held by various government agencies. However interested researchers are able to access all t...
BCI FDP data are available from https://repository.si.edu/handle/ 10088/11 . The authors do not own the data and are unable to share it in a public repository, as the majority of the data is held by various government agencies. However interested researchers are able to access all the data through the Smithsonian Insti...
RESEARCH ARTICLE Interactions between all pairs of neighboring trees in 16 forests worldwide reveal details of unique ecological processes in each forest, and provide windows into their evolutionary histories 4,5, Yi Jin6, 7, Jill ThompsonID 12, Sara GermainID 7, Heming Liu13, Joseph SmokeyID 1☯*, Bin Wang2☯, Shu...
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10.1088_1361-6463_ad146b.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
J. Phys. D: Appl. Phys. 57 (2024) 115204 (20pp) Journal of Physics D: Applied Physics https://doi.org/10.1088/1361-6463/ad146b Liquid treatment with a plasma jet surrounded by a gas shield: effect of the treated substrate and gas shield geometry on the plasma effluent conditions Pepijn Heirman1,∗, Ruben Verloy1,2...
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10.1371_journal.pgen.1010857.pdf
Data Availability Statement: Hi-C data were deposited in the Gene Expression Omnibus (accession no. GSE225771). The scripts used for analyzing Hi-C data have been deposited to Github (https://github.com/hbbrandao/Borrelia_HiC_ Analysis). All other relevant data are within the paper and its Supporting Information files.
Hi-C data were deposited in the Gene Expression Omnibus (accession no. GSE225771). The scripts used for analyzing Hi-C data have been deposited to Github ( https://github.com/hbbrandao/Borrelia_HiC_ Analysis ). All other relevant data are within the paper and its Supporting Information files.
RESEARCH ARTICLE Organization and replicon interactions within the highly segmented genome of Borrelia burgdorferi Zhongqing RenID WagnerID 2,3,4*, Xindan WangID 1* 1☯, Constantin N. TakacsID 2,3,4☯¤, Hugo B. BrandãoID 5, Christine Jacobs- a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 1 Departmen...
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10.1038_s41598-020-65766-8.pdf
Data availability Data are available at http://bicresources.jcbose.ac.in/ssaha4/drag/browse.php. Supporting figures and tables are included in Supplementary Files 1–3.
Data availability Data are available at http://bicresources.jcbose.ac.in/ssaha4/drag/browse.php . Supporting figures and tables are included in Supplementary Files 1-3.
open Survey of drug resistance associated gene mutations in Mycobacterium tuberculosis, eSKApe and other bacterial species Abhirupa Ghosh1,2, Saran n.1,2 & Sudipto Saha1 ✉ tuberculosis treatment includes broad-spectrum antibiotics such as rifampicin, streptomycin and fluoroquinolones, which are also used against oth...
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10.1007_s00127-023-02428-w.pdf
Data Availability The datasets generated during and/or analysed dur- ing the current study are not publicly available under current ethical approvals but are available from the corresponding author on reason- able request.
Data Availability The datasets generated during and/or analysed during the current study are not publicly available under current ethical approvals but are available from the corresponding author on reasonable request.
Social Psychiatry and Psychiatric Epidemiology (2023) 58:569–579 https://doi.org/10.1007/s00127-023-02428-w ORIGINAL PAPER Five‑year illness trajectories across racial groups in the UK following a first episode psychosis Siân Lowri Griffiths1 Linda Everard2 · Peter B. Jones3 · David Fowler4 · Joanne Hodgekins5 · Tim...
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10.1088_1402-4896_ad0c11.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). ORCID iDs Yaseen Muhammad https://orcid.org/0000-0002-7042-1527
Phys. Scr. 98 (2023) 125967 https://doi.org/10.1088/1402-4896/ad0c11 PAPER RECEIVED 3 May 2023 REVISED 18 September 2023 ACCEPTED FOR PUBLICATION 13 November 2023 PUBLISHED 27 November 2023 Comparative investigation of low and high pelletize pressure for (Ag)x/CuTl-1223 nanoparticles-superconductor composites Y...
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10.1371_journal.pone.0248369.pdf
Data Availability Statement: All relevant data are within the paper and its Supporting information files.
All relevant data are within the paper and its Supporting information files.
RESEARCH ARTICLE Climbing since the early Miocene: The fossil record of Paullinieae (Sapindaceae) Nathan A. JudID G. Chery5* 1,3*, Sarah E. AllenID 2, Chris W. Nelson3¤, Carolina L. Bastos4, Joyce 1 Department of Biology, William Jewell College, Liberty, MO, United States of America, 2 Department of Biology, Penn ...
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10.1371_journal.pone.0298960.pdf
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
All relevant data are within the manuscript and its Supporting Information files.
RESEARCH ARTICLE Prevalence and associated factors of refractive error among adults in South Ethiopia, a community-based cross-sectional study Marshet Gete Abebe1☯, Abiy Maru Alemayehu2☯, Minychil Bantihun Munaw2☯, Mikias Mered Tilahun2☯, Henok Biruk AlemayehuID 1☯* 1 Department of Ophthalmology and Optometry, Hawa...
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10.1016_j.cell.2023.05.028.pdf
lability—Plasmids generated in this study are available upon written request. Data and Code availability • • All raw and processed sequencing data in this study, including single-cell DNA methylation sequencing, single-cell RNA-seq, ChIP-seq, Cut and Run assay and Nanopore sequencing, have been deposited to the NCB...
• All raw and processed sequencing data in this study, including single-cell DNA methylation sequencing, single-cell RNA-seq, ChIP-seq, Cut and Run assay and Nanopore sequencing, have been deposited to the NCBI Gene Expression Omnibus (GEO) database under accession GSE208449. All data are publicly available as of the d...
A u t h o r M a n u s c r i p t A u t h o r M a n u s c r i p t A u t h o r M a n u s c r i p t A u t h o r M a n u s c r i p t HHS Public Access Author manuscript Cell. Author manuscript; available in PMC 2023 August 18. Published in final edited form as: Cell. 2023 June 22; 186(13): 2765–2782.e28. doi:10.10...
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10.1016_j.enpol.2022.113277.pdf
Data availability No data was used for the research described in the article.
Data availability No data was used for the research described in the article.
Community wealth building in an age of just transitions: exploring civil Community wealth building in an age of just transitions: exploring civil society approaches to net zero and future research synergies society approaches to net zero and future research synergies Max Lacey-Barnacle, Adrian Smith, Tim Foxon Public...
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10.1371_journal.pgen.1008460.pdf
Data Availability Statement: The RNA sequencing data of human cell lines and zebrafish tissues are available from NCBI Sequence Read Archive (SRA) (accession numbers PRJNA542249 and PRJNA543385). All other relevant data are available within the manuscript and its Supporting Information files.
The RNA sequencing data of human cell lines and zebrafish tissues are available from NCBI Sequence Read Archive (SRA) (accession numbers PRJNA542249 and PRJNA543385). All other relevant data are available within the manuscript and its Supporting Information files.
RESEARCH ARTICLE A missense mutation in SNRPE linked to non- syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing Tao Chen1☯, Bin ZhangID Sebastian Fro¨ hler1, Clemens GrimmID Min Zhang2, Nadine KraemerID 2,3☯, Thomas Ziegenhals4☯, Archana B. Prusty4☯, 4, Yuhui Hu2, Bernhard Schaefke2,5, Li...
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10.1371_journal.ppat.1009995.pdf
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
All relevant data are within the manuscript and its Supporting Information files.
RESEARCH ARTICLE Acquisition of yersinia murine toxin enabled Yersinia pestis to expand the range of mammalian hosts that sustain flea-borne plague David M. BlandID*, Ade´ laïde MiarinjaraID Joseph Hinnebusch ¤a, Christopher F. Bosio, Jeanette CalarcoID ¤b, B. a1111111111 a1111111111 a1111111111 a1111111111 a11111...
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10.1038_s41467-023-39627-7.pdf
Data availability The sequencing data generated in this study have been deposited in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE192447. The publicly available whole blood bulk short-read RNA-Seq data from healthy samples and samples infected with Makona Ebola Virus data used in this study a...
Data availability The sequencing data generated in this study have been deposited in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE192447 . The publicly available whole blood bulk short-read RNA-Seq data from healthy samples and samples infected with Makona Ebola Virus data used in this study ...
Article https://doi.org/10.1038/s41467-023-39627-7 Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques Received: 25 August 2022 Accepted: 19 June 2023 Check for updates ; , : ) ( 0 9 8 7 6 5 4 3 2 1 ; , : ) ( 0 9 8 7 6 5 4 3 2 1 1,2,13, Maria Sopena-Rios1,13, Raquel Garcí...
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10.15252_embj.2022112987.pdf
Data availability Original high resolution Z stacks for all images used in figures have been deposited in the BioImage Archive: accession number S-BIAD651 (https://www.ebi.ac.uk/biostudies/BioImages/studies/ S-BIAD651?query=S-BIAD651).
Data information: ****P < 0.0001; ***P < 0.001; *P < 0.05; ns, not significant. For panel B significance was determined using a one-way ANOVA; for all other panels significance was determined using an unpaired t-test. All images in this figure are maximum intensity projections. Scale bars = 10 lm. Source data are avail...
Article Nucleoporin foci are stress-sensitive condensates dispensable for C. elegans nuclear pore assembly , Basma Taleb Ismail1, Peter Askjaer2 & Geraldine Seydoux1,* Laura Thomas1 Abstract Nucleoporins (Nups) assemble nuclear pores that form the perme- ability barrier between nucleoplasm and cytoplasm. Nucleoporin...
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JOURNAL OF MEDICAL INTERNET RESEARCH Leis et al Original Paper Evaluating Behavioral and Linguistic Changes During Drug Treatment for Depression Using Tweets in Spanish: Pairwise Comparison Study Angela Leis*, PsyM; Francesco Ronzano*, PhD; Miguel Angel Mayer, MD, MPH, PhD; Laura I Furlong, PhD; Ferran Sanz, Prof D...
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10.1371_journal.pone.0287008.pdf
Data Availability Statement: The data underlying the results presented in the study are available from Table 1.
The data underlying the results presented in the study are available from Table 1 .
RESEARCH ARTICLE Sex differences in hepatitis A incidence rates– a multi-year pooled-analysis based on national data from nine high-income countries Manfred S. GreenID*, Naama Schwartz, Victoria PeerID School of Public Health, University of Haifa, Haifa, Israel * manfred.s.green@gmail.com a1111111111 a1111111111 a...
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10.1007_s10858-020-00303-3.pdf
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Journal of Biomolecular NMR (2020) 74:183–191 https://doi.org/10.1007/s10858-020-00303-3 ARTICLE Slow ring flips in aromatic cluster of GB1 studied by aromatic 13C relaxation dispersion methods Matthias Dreydoppel1 · Heiner N. Raum1 · Ulrich Weininger1 Received: 28 November 2019 / Accepted: 27 January 2020 / Publis...
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10.1038_s41598-021-00119-7.pdf
Data availability The data presented in this study are available on request from the corresponding authors.
Data availability The data presented in this study are available on request from the corresponding authors. Received: 7 July 2021; Accepted: 6 October 2021
OPEN Elevated serum levels of methylglyoxal are associated with impaired liver function in patients with liver cirrhosis Maurice Michel1*, Cornelius Hess2, Leonard Kaps1, Wolfgang M. Kremer1, Max Hilscher1, Peter R. Galle1, Markus Moehler1, Jörn M. Schattenberg1, Marcus‑Alexander Wörns1, Christian Labenz1 & Michael N...
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10.1038_s41593-023-01409-1.pdf
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Data availability All primary data for the figures and extended data figures are available from the corresponding author (K.D.) upon request. Code availability The code used for data processing and analysis is available from the corresponding author (K.D.) upon request. Nature Neuroscience Article https://doi.org/10.10...
Orbitofrontal cortex control of striatum leads economic decision-making https://doi.org/10.1038/s41593-023-01409-1 Received: 12 February 2023 Accepted: 17 July 2023 Published online: 17 August 2023 Check for updates Felicity Gore1,2,3, Melissa Hernandez1,2, Charu Ramakrishnan Ailey K. Crow1,2, Robert C. Malenka ...
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European Archives of Psychiatry and Clinical Neuroscience (2022) 272:327–339 https://doi.org/10.1007/s00406-021-01302-7 ORIGINAL PAPER P300 and delay‑discounting in obsessive–compulsive disorder Vera Flasbeck1  · Björn Enzi1 · Christina Andreou2  · Georg Juckel1  · Paraskevi Mavrogiorgou1 Received: 27 October 20...
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10.1038_s42003-023-04981-1.pdf
Data availability Plasmid sequences are available through the PLSDB database (https://ccb-microbe.cs. uni-saarland.de/plsdb/) while plasmid metadata files are hosted in a Github repository (https://github.com/LBHarrison/Lociq/). Source data for Figs. 3, 6 and 8 are provided in Supplementary Data 3, 7 and 8, respectively...
Data availability Plasmid sequences are available through the PLSDB database ( https://ccb-microbe.cs. uni-saarland.de/plsdb/ ) while plasmid metadata files are hosted in a Github repository ( https://github.com/LBHarrison/Lociq/ ). Source data for Figs. 3, 6 and 8 are provided in Supplementary Data 3, 7 and 8, respect...
ARTICLE https://doi.org/10.1038/s42003-023-04981-1 OPEN Lociq provides a loci-seeking approach for enhanced plasmid subtyping and structural characterization 1✉ Lucas Harrison , Shaohua Zhao1, Cong Li1, Patrick F. McDermott1, Gregory H. Tyson1 & Errol Strain1 ; , : ) ( 0 9 8 7 6 5 4 3 2 1 Antimicrobial resistanc...
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10.1038_s41588-023-01451-6.pdf
Data availability Public and private data can be accessed through their respective por- tals. Private data will require prior authorization. Data can be cleaned and normalized using any standard or well-established procedure for variant analysis or the procedures described in this paper, includ- ing referenced papers o...
Data availability Public and private data can be accessed through their respective portals. Private data will require prior authorization. Data can be cleaned and normalized using any standard or well-established procedure for variant analysis or the procedures described in this paper, including referenced papers or pr...
Landscape of mSWI/SNF chromatin remodeling complex perturbations in neurodevelopmental disorders https://doi.org/10.1038/s41588-023-01451-6 Received: 4 October 2022 Accepted: 20 June 2023 Published online: 27 July 2023 Check for updates Alfredo M. Valencia1,2,3,10,11,12, Akshay Sankar1,3,12, Pleuntje J. van der ...
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10.1371_journal.pone.0240269.pdf
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Genomics data are now available at the NCBI repository: https://www . Results
RESEARCH ARTICLE Using association rule mining to jointly detect clinical features and differentially expressed genes related to chronic inflammatory diseases Rosana VeronezeID RochaID Fernando J. Von Zuben1, Raquel Mantuaneli Scarel-Caminaga2 3, Cla´ udia V. Maurer-Morelli3, Silvana Regina Perez Orrico4,5, Joni A. ...
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10.1186_s12889-023-15632-9.pdf
Data availability All datasets used for supporting the conclusions of this paper are available from the corresponding author on request.
Data availability All datasets used for supporting the conclusions of this paper are available from the corresponding author on request.
Joseph et al. BMC Public Health (2023) 23:748 https://doi.org/10.1186/s12889-023-15632-9 BMC Public Health Who are the vulnerable, and how do we reach them? Perspectives of health system actors and community leaders in Kerala, India Jaison Joseph1*, Hari Sankar1, Gloria Benny1 and Devaki Nambiar1,2,3 Abstr...
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10.1016_j.yjsbx.2023.100085.pdf
Data availability Micrographs are available at EMPIAR-11397. Reconstructions are available on EMDB with the following accession codes: for Glacios 0-50 nm, EMD-29566; 50-100 nm, EMD-29567; 100-150 nm, EMD-29568; 150-200 nm, EMD-29569; 200-500 nm, EMD-29570. For Arctica in counting mode 0-50 nm, EM...
Data availability Micrographs are available at EMPIAR-11397. Reconstructions are available on EMDB with the following accession codes: for Glacios 0-50 nm, EMD-29566; 50-100 nm, EMD-29567; 100-150 nm, EMD-29568; 150-200 nm, EMD-29569; 200-500 nm, EMD-29570. For Arctica in counting mode 0-50 nm, EMD-29573; 50-100 nm, EM...
Contents lists available at ScienceDirect Journal of Structural Biology: X journal homepage: www.sciencedirect.com/journal/journal-of-structural-biology-x Measuring the effects of ice thickness on resolution in single particle cryo-EM Kasahun Neselu a, Bing Wang b, William J. Rice b, c, Clinton S. Potter a, Bridget...
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10.1016_S2213-2600(20)30559-2.pdf
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Data sharing Access to all data and samples collected by ISARIC4C are controlled by an Independent Data and Materials Access Committee composed of representatives of research funders, academia, clinical medicine, public health, and industry. The application process for access to the data is available on the ISARIC4C we...
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10.1371_journal.pgph.0002891.pdf
Data Availability Statement: Data are included in supporting materials.
Data are included in supporting materials.
RESEARCH ARTICLE HIV epidemiologic trends among occupational groups in Rakai, Uganda: A population-based longitudinal study, 1999–2016 1, Joseph Kagaayi2,3, Joseph Ssekasanvu1,2, Robert Ssekubugu2, Victor O. PopoolaID Grace Kigozi2, Anthony Ndyanabo2, Fred Nalugoda2, Larry W. Chang1,2,4, Tom Lutalo2, Aaron A. R. Tob...
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10.1038_s41467-023-38529-y.pdf
Data availability Spike recording data in NWB format are available for download at https://dandiarchive.org/dandiset/000060/draft. Source data are provided with this paper.
Data availability Spike recording data in NWB format are available for download at https://dandiarchive.org/dandiset/000060/draft . Source data are provided with this paper. Code availability The Julia code for training spiking neural network is available at https:// github.com/SpikingNetwork/distributedActivity 75 .
Article https://doi.org/10.1038/s41467-023-38529-y Distributing task-related neural activity across a cortical network through task-independent connections Received: 18 July 2022 Accepted: 5 May 2023 Check for updates ; , : ) ( 0 9 8 7 6 5 4 3 2 1 ; , : ) ( 0 9 8 7 6 5 4 3 2 1 Christopher M. Kim 1,2 Karel Svo...
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10.3390_biom11010118.pdf
Data Availability Statement: All data are contained within the article or supplementary materia
Data Availability Statement: All data are contained within the article or supplementary material.
Article Ginsenoside Rg3 Prevents Oncogenic Long Noncoding RNA ATXN8OS from Inhibiting Tumor-Suppressive microRNA-424-5p in Breast Cancer Cells Heejoo Kim †, Hwee Won Ji †, Hyeon Woo Kim , Sung Hwan Yun, Jae Eun Park and Sun Jung Kim * Department of Life Science, Dongguk University-Seoul, Goyang 10326, Korea; heejoo09...
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10.1088_1402-4896_ad1320.pdf
Data availability statement All data used are available in the manuscript. The data that support the findings of this study are available upon reasonable request from the authors.
Data availability statement All data used are available in the manuscript. The data that support the findings of this study are available upon reasonable request from the authors.
Phys. Scr. 99 (2024) 015920 https://doi.org/10.1088/1402-4896/ad1320 PAPER RECEIVED 31 October 2023 REVISED 26 November 2023 ACCEPTED FOR PUBLICATION 6 December 2023 PUBLISHED 15 December 2023 CO2 capture and storage by metal and non-metal decorated silicon carbide nanotubes: a DFT study Yahaya Saadu Itas1,∗ ,...
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10.1038_s41467-023-37865-3.pdf
ndings of this study are available in the RCSB Protein Data Bank (PDB) under accession numbers: 7LV2 [https://doi.org/10.2210/pdb7LV2/pdb], 7LTU [https://doi.org/10. 7LUX [https://doi.org/10.2210/ 2210/pdb7LTU/pdb] and 7LUZ [https://doi.org/10.2210/ pdb7LUX/pdb] pdb7LUZ/pdb]. The amino acid sequences of the Nucleocapsi...
Data availability Atomic coordinates that support the findings of this study are available in the RCSB Protein Data Bank (PDB) under accession numbers: 7LV2 [ https://doi.org/10.2210/pdb7LV2/pdb ], 7LTU [ https://doi.org/10. 2210/pdb7LTU/pdb ] (form 1), 7LUX [ https://doi.org/10.2210/ pdb7LUX/pdb ] (form 2), and 7LUZ [...
Article https://doi.org/10.1038/s41467-023-37865-3 Low complexity domains of the nucleocapsid protein of SARS-CoV-2 form amyloid fibrils Received: 29 July 2022 Accepted: 3 April 2023 Check for updates ; , : ) ( 0 9 8 7 6 5 4 3 2 1 ; , : ) ( 0 9 8 7 6 5 4 3 2 1 1,2,3,4, Xinyi Cheng 1,2,3,4, Lukasz Salwinski 1,...
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10.1111_jbfa.12686.pdf
DATA AVAILABILITY STATEMENT The data that support the findings of this study are available from third parties. Restrictions apply to the availability of these data, which were used under license for this study. Data are available from the authors with the permission of third partie
DATA AVAILABILITY STATEMENT The data that support the findings of this study are available from third parties. Restrictions apply to the availability of these data, which were used under license for this study. Data are available from the authors with the permission of third parties.
Asymmetric trading responses to credit rating announcements from issuer- Asymmetric trading responses to credit rating announcements from issuer- versus investor-paid rating agencies versus investor-paid rating agencies Quan Pham Minh Nguyen, HX Do, A Molchanov, L Nguyen, NH Nguyen Publication date Publication date 0...
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10.1371_journal.pcbi.1007774.pdf
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All relevant data are available at the github repository: https://github. com/mdkarcher/BEAST-XML .
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10.1088_1361-6382_ad0749.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supple- mentary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Class. Quantum Grav. 40 (2023) 235011 (14pp) https://doi.org/10.1088/1361-6382/ad0749 Classical and Quantum Gravity Reconciling absence of vDVZ discontinuity with absence of ghosts in nonlocal linearized gravity D Dalmazi UNESP—Campus de Guaratinguetá—DFI, CEP, 12516-410 Guaratinguetá, SP, Brazil E-mail: denis.d...
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10.1103_physrevd.105.123002.pdf
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PHYSICAL REVIEW D 105, 123002 (2022) Revisiting the dark matter interpretation of excess rates in semiconductors Peter Abbamonte,1,* Daniel Baxter Noah Kurinsky,6,∥ Yonatan Kahn,1,3,‡ Bashi Mandava ,1,7,¶ and Lucas K. Wagner1,8,** Gordan Krnjaic,2,4,5,§ ,2,† 1Department of Physics, University of Illinois at Urba...
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10.1371_journal.pone.0280975.pdf
Data Availability Statement: All relevant data are within the paper and its Supporting Information files.
All relevant data are within the paper and its Supporting Information files.
RESEARCH ARTICLE Biochemical characterization of a GDP- mannose transporter from Chaetomium thermophilum Gowtham Thambra Rajan PremageethaID Sucharita BoseID Samuel GrandfieldID Subramanian RamaswamyID 4, Vinod NayakID 1,2* 2, Lavanyaa Manjunath2, Deepthi Joseph2, Aviv PazID 4, 2, Luis M. Bredeston5, Jeff Abrams...
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10.1186_s12934-021-01548-9.pdf
Availability of data and materials The original contributions presented in the study are publicly available. The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in National Genomics Data Center (Nucleic Acids Res 2020), Beijing Ins...
Availability of data and materials The original contributions presented in the study are publicly available. The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in National Genomics Data Center (Nucleic Acids Res 2020), Beijing Ins...
Yuan et al. Microb Cell Fact (2021) 20:53 https://doi.org/10.1186/s12934-021-01548-9 Microbial Cell Factories RESEARCH Open Access The role of the gut microbiota on the metabolic status of obese children Xin Yuan1, Ruimin Chen1* , Kenneth L. McCormick2, Ying Zhang1, Xiangquan Lin1 and Xiaohong Yang1 Abs...
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10.1038_s41586-023-05909-9.pdf
Data availability The atomic coordinates and experimental data of RPB_PEW3_R4– PAWx4, RPB_PLP3_R6–PLPx6, RPB_LRP2_R4–LRPx4, RPB_PLP1_R6– PLPx6, RPB_PLP1_R6–PLPx6 (alternative conformation 1), RPB_PLP1_ R6–PLPx6 (alternative conformation 2) and RPB_LRP2_R4 (pseudo- polymeric) have been deposited in the RCSB PDB with the...
Data availability The atomic coordinates and experimental data of RPB_PEW3_R4-PAWx4, RPB_PLP3_R6-PLPx6, RPB_LRP2_R4-LRPx4, RPB_PLP1_R6-PLPx6, RPB_PLP1_R6-PLPx6 (alternative conformation 1), RPB_PLP1_ R6-PLPx6 (alternative conformation 2) and RPB_LRP2_R4 (pseudopolymeric) have been deposited in the RCSB PDB with the acc...
De novo design of modular peptide-binding proteins by superhelical matching https://doi.org/10.1038/s41586-023-05909-9 Received: 10 April 2022 Accepted: 1 March 2023 Published online: 5 April 2023 Open access Check for updates Kejia Wu1,2,3,12, Hua Bai1,2,4,12, Ya-Ting Chang5, Rachel Redler5, Kerrie E. McNally6...
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10.1161_CIRCRESAHA.121.319314.pdf
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Sources of Funding This work was funded by National Institutes of Health grants HL139819 and HL141256 to K. Walsh, HL152174 to S. Sano and K. Walsh, T32 HL007284 to N.W. Chavkin, and American Heart Association grant 20POST35210098 to M.A. Evans.
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10.1371_journal.pwat.0000213.pdf
Data Availability Statement: All data supporting this study is free access data and the sources and collections details are provided as supplementary information accompanying this paper. The code used for the analysis and results figures is also made available at: https://github.com/J-Marcal/ WSF_IneqAnalysis.
All data supporting this study is free access data and the sources and collections details are provided as supplementary information accompanying this paper. The code used for the analysis and results figures is also made available at: https://github.com/J-Marcal/ WSF_IneqAnalysis .
RESEARCH ARTICLE Assessing inequalities in urban water security through geospatial analysis Juliana Marc¸ alID 1,2* Jan HofmanID 1,2*, Junjie Shen3, Blanca Antizar-Ladislao4,5, David Butler6, 1 Water Innovation and Research Centre (WIRC), Department of Chemical Engineering, University of Bath, Bath, United Kingdom,...
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10.1371_journal.pone.0283795.pdf
Data Availability Statement: Data and codes are available at: DOI:10.17605/OSF.IO/PS4RM.
Data and codes are available at: DOI:10.17605/OSF.IO/PS4RM.
RESEARCH ARTICLE The Polish adaptation of the measurements of rule-governed behaviors: Generalized Pliance Questionnaire, Generalized Tracking Questionnaire and Generalized Self-Pliance Questionnaire Joanna DudekID 1☯*, Maria Cyniak-Cieciura2☯, Paweł OstaszewskiID 3☯ a1111111111 a1111111111 a1111111111 a1111111111...
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10.1038_s41467-023-40247-4.pdf
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Data availability The raw reads, and complete pathogen genomes generated in this study have been deposited in the Sequence Read Archive (SRA) and NCBI GenBank, respectively, under BioProject accession codes PRJNA824010 and PRJNA436552 . Sample metadata (collection date, state, age, sequencing machine, sequencing batch,...
Article https://doi.org/10.1038/s41467-023-40247-4 Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria Received: 18 January 2023 A list of authors and their affiliations appears at the end of the paper Accepted: 10 July 2023 Check for updates ; , : ) ( 0 9 8 7 6 5 4 3 ...
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10.1016_j.jbc.2023.105075.pdf
Data availability All data described within the article are contained in the document. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (73) partner repository with the dataset identifier PXD042589. Any further information and requests for resources and re- agent...
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RESEARCH ARTICLE Lipoylation is dependent on the ferredoxin FDX1 and dispensable under hypoxia in human cells Received for publication, December 22, 2022, and in revised form, June 23, 2023 Published, Papers in Press, July 20, 2023, https://doi.org/10.1016/j.jbc.2023.105075 Pallavi R. Joshi1,2,3, Shayan Sadre1,2,3 Fr...
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10.1112_blms.12639.pdf
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ETH Library The proportion of derangements characterizes the symmetric and alternating groups Journal Article Author(s): Poonen, Bjorn; Slavov, Kaloyan Publication date: 2022-08 Permanent link: https://doi.org/10.3929/ethz-b-000544180 Rights / license: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 ...
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10.1007_s00440-023-01195-8.pdf
Data availability Data sharing not applicable to this article as no datasets were generated or analysed during the current study.
Data availability Data sharing not applicable to this article as no datasets were generated or analysed during
Probability Theory and Related Fields https://doi.org/10.1007/s00440-023-01195-8 Biased 2 × 2 periodic Aztec diamond and an elliptic curve Alexei Borodin1 · Maurice Duits2 Received: 15 April 2022 / Revised: 15 December 2022 / Accepted: 14 January 2023 © The Author(s) 2023 Abstract We study random domino tilings of ...
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10.1088_1361-648x_ad1135.pdf
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
Data availability statement All data that support the findings of this study are included within the article (and any supplementary files).
J. Phys.: Condens. Matter 36 (2024) 115102 (10pp) Journal of Physics: Condensed Matter https://doi.org/10.1088/1361-648X/ad1135 Two modes of motions for a single disk on the vibration stage Liyang Guan1, Li Tian1, Meiying Hou2,3,∗ and Yilong Han1,∗ 1 Department of Physics, Hong Kong University of Science and Te...
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10.1103_physrevresearch.4.043059.pdf
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PHYSICAL REVIEW RESEARCH 4, 043059 (2022) Class of distorted Landau levels and Hall phases in a two-dimensional electron gas subject to an inhomogeneous magnetic field Dominik Sidler ,1,2,* Vasil Rokaj ,1,3,† Michael Ruggenthaler,1,2,‡ and Angel Rubio 1,2,4,5,§ 1Max Planck Institute for the Structure and Dynamics o...
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10.1038/s41523-022-00429-7
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DATA AVAILABILITY The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
www.nature.com/npjbcancer OPEN ARTICLE A prospective trial of treatment de-escalation following neoadjuvant paclitaxel/trastuzumab/pertuzumab in HER2- positive breast cancer Adrienne G. Waks1,2,3,13, Neelam V. Desai Laura M. Spring3,7, Meredith Faggen3,8, Michael Constantine3,6, Otto Metzger1,2,3, Jillian Alberti1, J...
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10.1186_s12915-020-00859-4.pdf
Availability of data and materials All data generated or analysed during this study are included in this published article, its supplementary information files and publicly available repositories.
Availability of data and materials All data generated or analysed during this study are included in this published article, its supplementary information files and publicly available
Burns et al. BMC Biology (2020) 18:133 https://doi.org/10.1186/s12915-020-00859-4 R E S E A R C H A R T I C L E Open Access Retargeting azithromycin analogues to have dual-modality antimalarial activity Amy L. Burns1, Brad E. Sleebs2,3, Ghizal Siddiqui4, Amanda E. De Paoli4, Dovile Anderson4, Benjamin Liffn...
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10.1088_1361-6587_acff7f.pdf
The data that support the findings of this study are openly available at the following URL/DOI. https://github.com/ YukiJajima/improved-spork/blob/main/NLD_data_CNN.
Data availability statement The data that support the findings of this study are openly available at the following URL/DOI. https://github.com/ YukiJajima/improved-spork/blob/main/NLD_data_CNN .
Plasma Phys. Control. Fusion 65 (2023) 125003 (8pp) Plasma Physics and Controlled Fusion https://doi.org/10.1088/1361-6587/acff7f Estimation of 2D profile dynamics of electrostatic potential fluctuations using multi-scale deep learning Yuki Jajima1, Makoto Sasaki1,∗, Ryohtaroh T Ishikawa2, Motoki Nakata2,3, Tats...
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10.1007_s11538-020-00756-5.pdf
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Bulletin of Mathematical Biology (2020) 82:74 https://doi.org/10.1007/s11538-020-00756-5 O R I G I N A L P A P E R Population Dynamics with Threshold Effects Give Rise to a Diverse Family of Allee Effects Nabil T. Fadai1 · Matthew J. Simpson2 Received: 16 April 2020 / Accepted: 27 May 2020 / Published online: 12 J...
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10.1038_s41598-022-05932-2.pdf
Data availability All ISI system code is deposited at https:// github. com/ haide rlab/ ISI, and source data and analysis code to rep- licate the main results will be publicly available at DOI (https:// doi. org/ 10. 6084/ m9. figsh are. 16200 711) upon
Data availability All ISI system code is deposited at https:// github. com/ haide rlab/ ISI , and source data and analysis code to replicate the main results will be publicly available at DOI ( https:// doi. org/ 10. 6084/ m9. figsh are. 16200 711 ) upon publication.
OPEN Optimizing intact skull intrinsic signal imaging for subsequent targeted electrophysiology across mouse visual cortex Armel Nsiangani1,3, Joseph Del Rosario1, Alan C. Yeh1, Donghoon Shin2, Shea Wells2, Tidhar Lev‑Ari1, Brice Williams1 & Bilal Haider1* Understanding brain function requires repeatable measurement...
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10.1038_s41598-022-07802-3.pdf
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OPEN Predicting individual perceptual scent impression from imbalanced dataset using mass spectrum of odorant molecules Tanoy Debnath1,3* & Takamichi Nakamoto1,2,3* Predicting odor impression is considered an important step towards measuring the quality of scent in the food, perfume, and cosmetic industries. In odor...
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10.1090_bproc_99.pdf
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PROCEEDINGS OF THE AMERICAN MATHEMATICAL SOCIETY, SERIES B Volume 9, Pages 159–173 (April 12, 2022) https://doi.org/10.1090/bproc/99 SEGRE-DEGENERATE POINTS FORM A SEMIANALYTIC SET JI ˇR´I LEBL (Communicated by Harold P. Boas) Abstract. We prove that the set of Segre-degenerate points of a real-analytic subvariety ...
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10.1371_journal.pone.0255335.pdf
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
All relevant data are within the manuscript and its Supporting Information files. Data curation: Melanie Ricke-Hoch, Elisabeth Stelling, Martina Kasten, Thomas Gausepohl,
RESEARCH ARTICLE Impaired immune response mediated by prostaglandin E2 promotes severe COVID-19 disease 1‡*, Elisabeth Stelling1‡, Lisa Lasswitz2, Antonia P. Gunesch2,3,4, 2,5,6, Thomas Pietschmann2,3, Virginie Montiel7, Jean-Luc Balligand7, Melanie Ricke-HochID Martina Kasten1, Francisco J. Zapatero-Belincho´ n2,5...
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10.1089_cmb.2022.0149.pdf
AVAILABILITY IntOMICS is open source software written in R, under GPL-2, and available at https://bioconductor.org/ packages/IntOMICS. The implementation relies on existing R package
AVAILABILITY IntOMICS is open source software written in R, under GPL-2, and available at https://bioconductor.org/ packages/IntOMICS . The implementation relies on existing R packages.
JOURNAL OF COMPUTATIONAL BIOLOGY Volume 30, Number 5, 2023 Mary Ann Liebert, Inc. Pp. 569–574 DOI: 10.1089/cmb.2022.0149 Open camera or QR reader and scan code to access this article and other resources online. IntOMICS: A Bayesian Framework for Reconstructing Regulatory Networks Using Multi-Omics Data ANNA PACˇ I´N...
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10.1093_gbe_evad119.pdf
Data Availability NCBI accession numbers for all genes analyzed are provided in supplementary data file 1, Supplementary Material online. Alignments and trees used in positive selection analyses are provided in supplementary data file 2, Supplementary Material online. Genotypes for great ape species at th...
Data Availability NCBI accession numbers for all genes analyzed are provided in supplementary data file 1, Supplementary Material online. Alignments and trees used in positive selection analyses are provided in supplementary data file 2, Supplementary Material online. Genotypes for great ape species at the position of ...
GBE Rapid Evolution of Glycan Recognition Receptors Reveals an Axis of Host–Microbe Arms Races beyond Canonical Protein–Protein Interfaces Zoë A. Hilbert Ellen M. Leffler 1,2,*, Paige E. Haffener1, Hannah J. Young1,2, Mara J.W. Schwiesow1,2, 1, and Nels C. Elde1,2,* 1Department of Human Genetics, University of Utah...
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