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10.1111_sapm.12544.pdf | DATA AVA ILAB IL ITY STATEMENT
Data sharing not applicable to this article as no datasets were generated or analyzed during the
current study. | null |
10.1073_pnas.2221809120.pdf | Data, Materials, and Software AvailabilityAll study data are included in the article and/or SI Appendix. Sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus, accession number GSE234805 (74). | null |
10.3390_bs13010066.pdf | Data Availability Statement: Data supporting the reported results is kept by the first author. | Data Availability Statement: Data supporting the reported results is kept by the first author. Acknowledgments: We would like to thank the visionary, courageous, resourceful research participants, all of whom are engaged in initiatives to transform the lives of individuals and communities. They are the inspiration behi... |
10.1371_journal.pone.0265477.pdf | Data Availability Statement The raw data was collected from Taiwan Centers for Disease Control (CDC) and it is available at www.cdc.gov.tw/En. The tool and dataset are publicly available at github.com/mahsaashouri/Taiwan-COVID-19-Interactive-tool. | The raw data was collected from Taiwan Centers for Disease Control (CDC) and it is available at www.cdc.gov.tw/En . The tool and dataset are publicly available at github. com/mahsaashouri/Taiwan |
10.2196_41005.pdf | Data Availability The deidentified data analyzed in this study are available from the corresponding author upon reasonable request. | Data Availability The deidentified data analyzed in this study are available from the corresponding author upon reasonable request. |
10.3389/fnbeh.2020.584731 | DATA AVAILABILITY STATEMENT
The raw data supporting the conclusions of this article will be
made available by the authors, without undue reservation. | DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation. |
10.1073_pnas.2301852120.pdf | Data, Materials, and Software Availability Cryo-EM images data have been deposited in Electron Microscopy Public Image Archive (EMPIAR) database with accession number EMPIAR-11544 (https://www.ebi.ac.uk/empiar/EMPIAR-11544/) (41). | null |
10.7554_elife.76554.pdf | Data availability
Sequencing data have been deposited in GEO under accession code GSE157681.
The following dataset was generated:
Author(s) Year Dataset title Dataset URL Database and Identifier
Brown JM, Helsley R,
Kadam A, Neumann
C
2021 The Gut Microbe-Derived
Metabolite Trimethylamine
is a Biomarker of and
Therapeu... | Data availability Sequencing data have been deposited in GEO under accession code GSE157681. The following dataset was generated: |
10.1088_1758-5090_acfb3c.pdf | Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: www.ncbi.nlm.nih.gov/bioproject/PRJNA953644. The other data that supports the findings of this study are available upon reasonable request. | Data availability statement The data that support the findings of this study are openly available at the following URL/DOI: www.ncbi.nlm.nih.gov/bioproject/PRJNA953644 . The other data that supports the findings of this study are available upon reasonable request. |
10.1371_journal.pclm.0000285.pdf | Data Availability Statement: R code and aggregated data used in climate risk calculations are available at https://github.com/groundfish-climatechange/fish-footprints. Confidential vessel-level logbook, landings, and registration data may be acquired by direct request from the California, Oregon, and Washington Departm... | R code and aggregated data used in climate risk calculations are available at https://github.com/groundfish- climatechange/fish-footprints . Confidential data may be acquired |
10.1371_journal.pone.0256592.pdf | Data Availability Statement The data underlying the results presented in this study are from the Centers for Medicare and Medicaid Services and CMS does not permit data sharing as per their legally binding and standard data use agreements. The exact data used in this study can be purchased directly from the Centers for... | The data underlying the results presented in this study are from the Centers for Medicare and Medicaid Services and CMS does not permit data sharing as per their legally binding and standard data use agreements. The exact data used in this study can be purchased directly from the Centers for Medicare and Medicaid Servi... |
10.1038/s41467-022-34431-1 | Data availability
The data that support this study are available from the corresponding
author upon reasonable request. The crystal structure described in this
study has been deposited in the Protein Data Bank under the accession
number 7TD5. The LC-MS/MS data files have been deposited to the ProteomeXchange Consortium... | Data availability The data that support this study are available from the corresponding author upon reasonable request. The crystal structure described in this study has been deposited in the Protein Data Bank under the accession number 7TD5. The LC-MS/MS data files have been deposited to the Pro-teomeXchange Consortiu... |
10.1088_1361-6463_ad0ac1.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1186_s12866-020-01881-w.pdf | Availability of data and materials All data generated or analyzed during this study are included in this published article [and its supplementary information files]. | Availability of data and materials All data generated or analyzed during this study are included in this published article [and its supplementary information files]. |
10.1021/jacs.3c00612 | null | null |
10.1016_j.isci.2022.104876.pdf | Data and code availability
d Microscopy images published in this paper will be shared by the lead contact upon request.
d Original code is uploaded in the supplementary documents and is publicly available as of the date of
publication.
Section 1: Data
All data reported in this paper will be shared by the lead contact u... | Materials availability This study did not generate new unique reagents. Data and code availability d Microscopy images published in this paper will be shared by the lead contact upon request. d Original code is uploaded in the supplementary documents and is publicly available as of the date of publication. |
10.1088_1361-6641_acfa1f.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1371_journal.pone.0232007.pdf | Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. | All relevant data are within the manuscript and its Supporting Information files. |
10.1007/s13187-021-02114-y | DATA AVAILABILITY
The datasets generated during and/or analyzed during the current study are available
from the corresponding author on reasonable request. | Data Availability Anonymized data will be made available upon request. |
10.3389/fmicb.2019.03155 | DATA AVAILABILITY STATEMENT
The raw data supporting the conclusions of this article are made
available by the authors, without undue reservation, through
Zenodo (doi: 10.5281/zenodo.3582838). | DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article are made available by the authors, without undue reservation, through Zenodo ( doi: 10.5281/zenodo.3582838 ). |
10.1128_mbio.01039-23.pdf | DATA AVAILABILITYCrystallographic data have been deposited to the RCSB protein data bank (accessions 8FZY, 8FZZ, and 8G0K). Metagenomic sequencing data were previously published (32) and are publicly available at the NCBI sequence read archive (BioProject PRJNA398089). Plasmids and bacterial strains generated in the st... | DATA AVAILABILITY Crystallographic data have been deposited to the RCSB protein data bank (accessions 8FZY, 8FZZ, and 8G0K ). Metagenomic sequencing data were previously published (32) and are publicly available at the NCBI sequence read archive (BioProject PRJNA398089 ). Plasmids and bacterial strains generated in the... |
10.1038_s41467-022-28771-1.pdf | Data availability Data supporting the results of this study are presented within the article and supplementary figures. NGS data are available in the NCBI Sequence Read Archive database (BioProject accession code PRJNA803881). Additional details and data to support the findings of this study are available from the corr... | Data availability Data supporting the results of this study are presented within the article and supplementary figures. NGS data are available in the NCBI Sequence Read Archive database (BioProject accession code PRJNA803881). Additional details and data to support the findings of this study are available from the corr... |
10.1073_pnas.2301121120.pdf | Data, Materials, and Software Availability Cryo-EM maps and atomic models for all structures described in this work have been deposited to the Electron Microscopy Data Bank (EMDB) and the Protein Data Bank (PDB), respectively. Accession codes are as follows: PLCβ3 in solution-8EMV and EMD-28266, PLCβ3 in complex with G... | null |
10.1103_physrevb.106.235128.pdf | null | null |
10.1371_journal.pntd.0009999.pdf | Data Availability Statement All relevant data are within the paper and its Supporting Information files. | All relevant data are within the paper and its Supporting Information files. |
10.1088_1361-6595_ad05f5.pdf | Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors. | Data availability statement The data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors. |
10.1038_s41598-020-79151-y.pdf | Data availability The raw data of the study are available at http://www.nature.com/srep. | Data availability The raw data of the study are available at http://www.natur e.com/srep . Received: 7 August 2020; Accepted: 1 December 2020 |
10.1038_s41467-022-30736-3.pdf | Data availability
The data used in this paper are available at the following url: https://figshare.com/
articles/dataset/Manuscript_Data/16695592. In addition, Source Data are provided with
this paper, which can be used to reproduce figures without rerunning analyses. Source
data are provided with this paper.
Code avai... | Data availability The data used in this paper are available at the following url: https://figshare.com/ articles/dataset/Manuscript_Data/16695592 . In addition, Source Data are provided with this paper, which can be used to reproduce figures without rerunning analyses. Source data are provided with this paper. Code ava... |
10.1088_1751-8121_ad0b5c.pdf | Data availability statementNo new data were created or analysed in this study. | Data availability statement No new data were created or analysed in this study. |
10.3390_genes14061231.pdf | Data Availability Statement Not applicable. | Data Availability Statement: Not applicable. Acknowledgments: The article publishing fees were funded by the University of Oradea. |
10.1088_1361-665x_ad1426.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1038/s41467-022-35202-8 | Data availability
Data supporting the findings of this manuscript are available from the
corresponding author upon request. The source data underlying all
figures are available as a Source Data file provided with this
paper. Source data are provided with this paper.
Code availability
All codes used for data analysis ma... | Data availability Data supporting the findings of this manuscript are available from the corresponding author upon request. The source data underlying all figures are available as a Source Data file provided with this paper. Source data are provided with this paper. Code availability All codes used for data analysis ma... |
10.1371_journal.pgen.1011201.pdf | Data Availability Statement: The consensus sequence of Spoink as well as the sequences of the six PCR amplicons are available at https://github.com/rpianezza/Dmel-Spoink/tree/main/releasedseqs. The tool LTRtoTE is available on GitHub (https://github.com/Almo96/LTRtoTE). The analysis performed in this work have been doc... | The consensus sequence of Spoink as well as the sequences of the six PCR amplicons are available at https://github. com/rpianezza/Dmel-Spoink/tree/main/ |
10.1371_journal.pone.0222013.pdf | Data Availability Statement All relevant data are within the paper and its Supporting Information files. | All relevant data are within the paper and its Supporting Information files. |
10.1007_s00208-022-02489-3.pdf | Data Availability Data sharing not applicable to this article as no data sets were generated or analysed
during the current study. | Data Availability Data sharing not applicable to this article as no data sets were generated or analysed during the current study. |
10.1017_s0260210522000614.pdf | null | null |
10.1158_1078-0432.ccr-21-3817.pdf | Data availability
The somatic variant calls and normalized RNA-seq intensity data,
code, and deidentified clinical data are available here: https://github.
com/kbolton-lab/Bolton_OCCC. This will enable all the figures and
tables to be re-generated and also provide data for others for future
analyses. We will also make ... | Data availability The somatic variant calls and normalized RNA-seq intensity data, code, and deidentified clinical data are available here: https://github. com/kbolton-lab/Bolton_OCCC . This will enable all the figures and tables to be re-generated and also provide data for others for future analyses. We will also make... |
10.1371_journal.pdig.0000221.pdf | Data Availability Statement Public deposition of raw data points would breach compliance with the protocol approved by the Danish Data Protection Agency. In the paper, we have also had to limit the number of indirect identifiers in cases where there might be a risk of compromising patient privacy (e.g. Tables 1 and 2).... | null |
10.1103_physrevd.107.063005.pdf | null | null |
10.1016_j.envres.2023.115368.pdf | Data availabilityData will be made available on request. | Data availability Data will be made available on request. |
10.1371_journal.pone.0263447.pdf | Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. | All relevant data are within the manuscript and its Supporting Information files. |
10.1038_s41598-021-03032-1.pdf | Data availability All data are available in the manuscript. | Data availability All data are available in the manuscript. Received: 24 May 2021; Accepted: 17 November 2021 |
10.3201_eid2507.181794.pdf | null | null |
10.1371_journal.pcbi.1008853.pdf | Data Availability Statement BCI FDP data are available from https://repository.si.edu/handle/10088/11. The authors do not own the data and are unable to share it in a public repository, as the majority of the data is held by various government agencies. However interested researchers are able to access all the data thr... | BCI FDP data are available from https://repository.si.edu/handle/ 10088/11 . The authors do not own the data and are unable to share it in a public repository, as the majority of the data is held by various government agencies. However interested researchers are able to access all the data through the Smithsonian Insti... |
10.1088_1361-6463_ad146b.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1371_journal.pgen.1010857.pdf | Data AvailabilityHi-C data were deposited in the Gene Expression Omnibus (accession no. GSE225771). The scripts used for analyzing Hi-C data have been deposited to Github (https://github.com/hbbrandao/Borrelia_HiC_Analysis). All other relevant data are within the paper and its Supporting Information files. | Hi-C data were deposited in the Gene Expression Omnibus (accession no. GSE225771). The scripts used for analyzing Hi-C data have been deposited to Github ( https://github.com/hbbrandao/Borrelia_HiC_ Analysis ). All other relevant data are within the paper and its Supporting Information files. |
10.1038_s41598-020-65766-8.pdf | Data availability Data are available at http://bicresources.jcbose.ac.in/ssaha4/drag/browse.php. Supporting figures and tables are included in Supplementary Files 1–3. | Data availability Data are available at http://bicresources.jcbose.ac.in/ssaha4/drag/browse.php . Supporting figures and tables are included in Supplementary Files 1-3. |
10.1007_s00127-023-02428-w.pdf | Data Availability The datasets generated during and/or analysed dur- ing the current study are not publicly available under current ethical approvals but are available from the corresponding author on reason- able request. | Data Availability The datasets generated during and/or analysed during the current study are not publicly available under current ethical approvals but are available from the corresponding author on reasonable request. |
10.1088_1402-4896_ad0c11.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). ORCID iDs Yaseen Muhammad https://orcid.org/0000-0002-7042-1527 |
10.1371_journal.pone.0248369.pdf | Data Availability Statement All relevant data are within the paper and its Supporting information files. | All relevant data are within the paper and its Supporting information files. |
10.1371_journal.pone.0298960.pdf | Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files. | All relevant data are within the manuscript and its Supporting Information files. |
10.1016_j.cell.2023.05.028.pdf | Data and Code availabilityAll raw and processed sequencing data in this study, including single-cell DNA methylation sequencing, single-cell RNA-seq, ChIP-seq, Cut and Run assay and Nanopore sequencing, have been deposited to the NCBI Gene Expression Omnibus (GEO) database under accession GSE208449. All data are public... | • All raw and processed sequencing data in this study, including single-cell DNA methylation sequencing, single-cell RNA-seq, ChIP-seq, Cut and Run assay and Nanopore sequencing, have been deposited to the NCBI Gene Expression Omnibus (GEO) database under accession GSE208449. All data are publicly available as of the d... |
10.1016_j.enpol.2022.113277.pdf | Data availabilityNo data was used for the research described in the article. | Data availability No data was used for the research described in the article. |
10.1371_journal.pgen.1008460.pdf | Data Availability Statement The RNA sequencing data of human cell lines and zebrafish tissues are available from NCBI Sequence Read Archive (SRA) (accession numbers PRJNA542249 and PRJNA543385). All other relevant data are available within the manuscript and its Supporting Information files. | The RNA sequencing data of human cell lines and zebrafish tissues are available from NCBI Sequence Read Archive (SRA) (accession numbers PRJNA542249 and PRJNA543385). All other relevant data are available within the manuscript and its Supporting Information files. |
10.1371_journal.ppat.1009995.pdf | Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. | All relevant data are within the manuscript and its Supporting Information files. |
10.1038_s41467-023-39627-7.pdf | Data availabilityThe sequencing data generated in this study have been deposited in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE192447. The publicly available whole blood bulk short-read RNA-Seq data from healthy samples and samples infected with Makona Ebola Virus data used in this study ar... | Data availability The sequencing data generated in this study have been deposited in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE192447 . The publicly available whole blood bulk short-read RNA-Seq data from healthy samples and samples infected with Makona Ebola Virus data used in this study ... |
10.15252_embj.2022112987.pdf | Data availability Original high resolution Z stacks for all images used in figures have been deposited in the BioImage Archive: accession number S‐BIAD651 (https://www.ebi.ac.uk/biostudies/BioImages/studies/S‐BIAD651?query=S‐BIAD651). | Data information: ****P < 0.0001; ***P < 0.001; *P < 0.05; ns, not significant. For panel B significance was determined using a one-way ANOVA; for all other panels significance was determined using an unpaired t-test. All images in this figure are maximum intensity projections. Scale bars = 10 lm. Source data are avail... |
10.2196_20920.pdf | null | null |
10.1371_journal.pone.0287008.pdf | Data Availability Statement The data underlying the results presented in the study are available from Table 1. | The data underlying the results presented in the study are available from Table 1 . |
10.1007_s10858-020-00303-3.pdf | null | null |
10.1038_s41598-021-00119-7.pdf | Data availability The data presented in this study are available on request from the corresponding authors. | Data availability The data presented in this study are available on request from the corresponding authors. Received: 7 July 2021; Accepted: 6 October 2021 |
10.1038_s41593-023-01409-1.pdf | Data availabilityAll primary data for the figures and extended data figures are available from the corresponding author (K.D.) upon request.Code availabilityThe code used for data processing and analysis is available from the corresponding author (K.D.) upon request. | Data availability All primary data for the figures and extended data figures are available from the corresponding author (K.D.) upon request. Code availability The code used for data processing and analysis is available from the corresponding author (K.D.) upon request. Nature Neuroscience Article https://doi.org/10.10... |
10.1007_s00406-021-01302-7.pdf | null | null |
10.1038_s42003-023-04981-1.pdf | Data availabilityPlasmid sequences are available through the PLSDB database (https://ccb-microbe.cs.uni-saarland.de/plsdb/) while plasmid metadata files are hosted in a Github repository (https://github.com/LBHarrison/Lociq/). Source data for Figs. 3, 6 and 8 are provided in Supplementary Data 3, 7 and 8, respectively.... | Data availability Plasmid sequences are available through the PLSDB database ( https://ccb-microbe.cs. uni-saarland.de/plsdb/ ) while plasmid metadata files are hosted in a Github repository ( https://github.com/LBHarrison/Lociq/ ). Source data for Figs. 3, 6 and 8 are provided in Supplementary Data 3, 7 and 8, respect... |
10.1038_s41588-023-01451-6.pdf | Data availabilityPublic and private data can be accessed through their respective portals. Private data will require prior authorization. Data can be cleaned and normalized using any standard or well-established procedure for variant analysis or the procedures described in this paper, including referenced papers or pro... | Data availability Public and private data can be accessed through their respective portals. Private data will require prior authorization. Data can be cleaned and normalized using any standard or well-established procedure for variant analysis or the procedures described in this paper, including referenced papers or pr... |
10.1371_journal.pone.0240269.pdf | Data Availability Statement Genomics data are now available at the NCBI repository: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156993. | Genomics data are now available at the NCBI repository: https://www . Results |
10.1186_s12889-023-15632-9.pdf | Data availability All datasets used for supporting the conclusions of this paper are available from the corresponding author on request. | Data availability All datasets used for supporting the conclusions of this paper are available from the corresponding author on request. |
10.1016_j.yjsbx.2023.100085.pdf | Data availability
Micrographs are available at EMPIAR-11397. Reconstructions are
available on EMDB with the following accession codes: for Glacios 0-50
nm, EMD-29566; 50-100 nm, EMD-29567; 100-150 nm, EMD-29568;
150-200 nm, EMD-29569; 200-500 nm, EMD-29570. For Arctica in
counting mode 0-50 nm, EMD-29573; 50-100 nm, EM... | Data availability Micrographs are available at EMPIAR-11397. Reconstructions are available on EMDB with the following accession codes: for Glacios 0-50 nm, EMD-29566; 50-100 nm, EMD-29567; 100-150 nm, EMD-29568; 150-200 nm, EMD-29569; 200-500 nm, EMD-29570. For Arctica in counting mode 0-50 nm, EMD-29573; 50-100 nm, EM... |
10.1016_S2213-2600(20)30559-2.pdf | Data sharing Access to all data and samples collected by ISARIC4C are controlled by an Independent Data and Materials Access Committee composed of representatives of research funders, academia, clinical medicine, public health, and industry. The application process for access to the data is available on the ISARIC4C we... | Data sharing Access to all data and samples collected by ISARIC4C are controlled by an Independent Data and Materials Access Committee composed of representatives of research funders, academia, clinical medicine, public health, and industry. The application process for access to the data is available on the ISARIC4C we... |
10.1371_journal.pgph.0002891.pdf | Data Availability Statement: Data are included in supporting materials. | Data are included in supporting materials. |
10.1038_s41467-023-38529-y.pdf | Data availability Spike recording data in NWB format are available for download at https://dandiarchive.org/dandiset/000060/draft. Source data are provided with this paper. | Data availability Spike recording data in NWB format are available for download at https://dandiarchive.org/dandiset/000060/draft . Source data are provided with this paper. Code availability The Julia code for training spiking neural network is available at https:// github.com/SpikingNetwork/distributedActivity 75 . |
10.3390_biom11010118.pdf | Data Availability StatementAll data are contained within the article or supplementary material. | Data Availability Statement: All data are contained within the article or supplementary material. |
10.1088_1402-4896_ad1320.pdf | Data availability statementAll data used are available in the manuscript. The data that support the findings of this study are available upon reasonable request from the authors. | Data availability statement All data used are available in the manuscript. The data that support the findings of this study are available upon reasonable request from the authors. |
10.1038_s41467-023-37865-3.pdf | Atomic coordinates that support the findings of this study are available in the RCSB Protein Data Bank (PDB) under accession numbers: 7LV2 [10.2210/pdb7LV2/pdb], 7LTU [10.2210/pdb7LTU/pdb] (form 1), 7LUX [10.2210/pdb7LUX/pdb] (form 2), and 7LUZ [10.2210/pdb7LUZ/pdb]. The amino acid sequences of the Nucleocapsid protein... | Data availability Atomic coordinates that support the findings of this study are available in the RCSB Protein Data Bank (PDB) under accession numbers: 7LV2 [ https://doi.org/10.2210/pdb7LV2/pdb ], 7LTU [ https://doi.org/10. 2210/pdb7LTU/pdb ] (form 1), 7LUX [ https://doi.org/10.2210/ pdb7LUX/pdb ] (form 2), and 7LUZ [... |
10.1111_jbfa.12686.pdf | DATA AVA ILAB IL ITY STATEMENT The data that support the findings of this study are available from third parties. Restrictions apply to the availability of these data, which were used under license for this study. Data are available from the authors with the permission of third parties. | DATA AVAILABILITY STATEMENT The data that support the findings of this study are available from third parties. Restrictions apply to the availability of these data, which were used under license for this study. Data are available from the authors with the permission of third parties. |
10.1371_journal.pcbi.1007774.pdf | Data Availability Statement All relevant data are available at the github repository: https://github.com/mdkarcher/BEAST-XML. | All relevant data are available at the github repository: https://github. com/mdkarcher/BEAST-XML . |
10.1088_1361-6382_ad0749.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1103_physrevd.105.123002.pdf | null | null |
10.1371_journal.pone.0280975.pdf | Data Availability Statement All relevant data are within the paper and its Supporting Information files. | All relevant data are within the paper and its Supporting Information files. |
10.1186_s12934-021-01548-9.pdf | Availability of data and materials The original contributions presented in the study are publicly available. The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in National Genomics Data Center (Nucleic Acids Res 2020), Beijing Ins... | Availability of data and materials The original contributions presented in the study are publicly available. The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in National Genomics Data Center (Nucleic Acids Res 2020), Beijing Ins... |
10.1038_s41586-023-05909-9.pdf | Data availability The atomic coordinates and experimental data of RPB_PEW3_R4–PAWx4, RPB_PLP3_R6–PLPx6, RPB_LRP2_R4–LRPx4, RPB_PLP1_R6–PLPx6, RPB_PLP1_R6–PLPx6 (alternative conformation 1), RPB_PLP1_R6–PLPx6 (alternative conformation 2) and RPB_LRP2_R4 (pseudopolymeric) have been deposited in the RCSB PDB with the acce... | Data availability The atomic coordinates and experimental data of RPB_PEW3_R4-PAWx4, RPB_PLP3_R6-PLPx6, RPB_LRP2_R4-LRPx4, RPB_PLP1_R6-PLPx6, RPB_PLP1_R6-PLPx6 (alternative conformation 1), RPB_PLP1_ R6-PLPx6 (alternative conformation 2) and RPB_LRP2_R4 (pseudopolymeric) have been deposited in the RCSB PDB with the acc... |
10.1161_CIRCRESAHA.121.319314.pdf | Data Availability
The detailed methods are available in the Data Supplement.
Please see also the Major Resources Table in the Data
Supplement. The supporting data are available from the cor-
responding author upon request. | Sources of Funding This work was funded by National Institutes of Health grants HL139819 and HL141256 to K. Walsh, HL152174 to S. Sano and K. Walsh, T32 HL007284 to N.W. Chavkin, and American Heart Association grant 20POST35210098 to M.A. Evans. |
10.1371_journal.pwat.0000213.pdf | Data Availability Statement: All data supporting this study is free access data and the sources and collections details are provided as supplementary information accompanying this paper. The code used for the analysis and results figures is also made available at: https://github.com/J-Marcal/WSF_IneqAnalysis. | All data supporting this study is free access data and the sources and collections details are provided as supplementary information accompanying this paper. The code used for the analysis and results figures is also made available at: https://github.com/J-Marcal/ WSF_IneqAnalysis . |
10.1371_journal.pone.0283795.pdf | Data Availability Statement Data and codes are available at: DOI:10.17605/OSF.IO/PS4RM. | Data and codes are available at: DOI:10.17605/OSF.IO/PS4RM. |
10.1038_s41467-023-40247-4.pdf | Data availabilityThe raw reads, and complete pathogen genomes generated in this study have been deposited in the Sequence Read Archive (SRA) and NCBI GenBank, respectively, under BioProject accession codes PRJNA824010 and PRJNA436552. Sample metadata (collection date, state, age, sequencing machine, sequencing batch, e... | Data availability The raw reads, and complete pathogen genomes generated in this study have been deposited in the Sequence Read Archive (SRA) and NCBI GenBank, respectively, under BioProject accession codes PRJNA824010 and PRJNA436552 . Sample metadata (collection date, state, age, sequencing machine, sequencing batch,... |
10.1016_j.jbc.2023.105075.pdf | Data availabilityAll data described within the article are contained in the document. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (73) partner repository with the dataset identifier PXD042589. Any further information and requests for resources and reagents s... | null |
10.1112_blms.12639.pdf | null | null |
10.1007_s00440-023-01195-8.pdf | Data availability Data sharing not applicable to this article as no datasets were generated or analysed during
the current study. | Data availability Data sharing not applicable to this article as no datasets were generated or analysed during |
10.1088_1361-648x_ad1135.pdf | Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). | Data availability statement All data that support the findings of this study are included within the article (and any supplementary files). |
10.1103_physrevresearch.4.043059.pdf | null | null |
10.1038/s41523-022-00429-7 | Data Availability Anonymized data will be made available upon
request. | DATA AVAILABILITY The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request. |
10.1186_s12915-020-00859-4.pdf | Availability of data and materialsAll data generated or analysed during this study are included in this published article, its supplementary information files and publicly available repositories. | Availability of data and materials All data generated or analysed during this study are included in this published article, its supplementary information files and publicly available |
10.1088_1361-6587_acff7f.pdf | Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI. https://github.com/YukiJajima/improved-spork/blob/main/NLD_data_CNN. | Data availability statement The data that support the findings of this study are openly available at the following URL/DOI. https://github.com/ YukiJajima/improved-spork/blob/main/NLD_data_CNN . |
10.1007_s11538-020-00756-5.pdf | null | null |
10.1038_s41598-022-05932-2.pdf | Data availability
All ISI system code is deposited at https://github.com/haiderlab/ISI, and source data and analysis code to rep-
licate the main results will be publicly available at DOI (https://doi.org/10.6084/m9.fgshare.16200711) upon
publication. | Data availability All ISI system code is deposited at https:// github. com/ haide rlab/ ISI , and source data and analysis code to replicate the main results will be publicly available at DOI ( https:// doi. org/ 10. 6084/ m9. figsh are. 16200 711 ) upon publication. |
10.1038_s41598-022-07802-3.pdf | null | null |
10.1090_bproc_99.pdf | null | null |
10.1371_journal.pone.0255335.pdf | Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. | All relevant data are within the manuscript and its Supporting Information files. Data curation: Melanie Ricke-Hoch, Elisabeth Stelling, Martina Kasten, Thomas Gausepohl, |
10.1089_cmb.2022.0149.pdf | AVAILABILITYIntOMICS is open source software written in R, under GPL-2, and available at https://bioconductor.org/packages/IntOMICS. The implementation relies on existing R packages. | AVAILABILITY IntOMICS is open source software written in R, under GPL-2, and available at https://bioconductor.org/ packages/IntOMICS . The implementation relies on existing R packages. |
10.1093_gbe_evad119.pdf | Data AvailabilityNCBI accession numbers for all genes analyzed are provided in supplementary data file 1, Supplementary Material online. Alignments and trees used in positive selection analyses are provided in supplementary data file 2, Supplementary Material online. Genotypes for great ape species at the position of t... | Data Availability NCBI accession numbers for all genes analyzed are provided in supplementary data file 1, Supplementary Material online. Alignments and trees used in positive selection analyses are provided in supplementary data file 2, Supplementary Material online. Genotypes for great ape species at the position of ... |
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