IdA
stringlengths 6
21
| IdB
stringlengths 6
21
| labels
int64 0
2
| mechanism
stringclasses 40
values | effect
stringclasses 10
values | score
float64 0.1
0.99
⌀ | sentence
stringlengths 10
1.63k
⌀ | signor_id
stringlengths 12
14
|
|---|---|---|---|---|---|---|---|
Q96FI4
|
P45983
| 0
|
phosphorylation
|
up-regulates activity
| 0.2
|
These data confirm that NEIL1 can be phosphorylated by JNK1 in vitro at S207, S306, and S61.
|
SIGNOR-278315
|
P13569
|
Q99942
| 0
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.665
|
JB12 cooperates with cytosolic Hsc70 and the ubiquitin ligase RMA1 to target CFTR and CFTRΔF508 for degradation.
|
SIGNOR-271494
|
P09619
|
P29353
| 1
|
phosphorylation
|
up-regulates
| 0.659
|
In this study, we have characterized the interaction between the pdgf beta-receptor and shc. multiple autophosphorylation sites in the pdgf beta-receptor are responsible for the binding of shc.
|
SIGNOR-36906
|
P04792
|
Q9Y243
| 0
|
phosphorylation
|
down-regulates
| 0.286
|
First, the akt1, akt2, and akt3 isoforms can bind directly to hsp27 and can be found in a complex with p38 mapk, mk2, and hsp27 [98_100]. Second, rane and colleagues showed that akt could phosphorylate hsp27 at ser-82, but not ser-15 or ser-78, in vitro, while co-expression of an active akt mutant and hsp27 in hek cells resulted in hsp27 phosphorylation at the same residue.
|
SIGNOR-186780
|
O95202
|
Q9Y276
| 2
|
binding
|
up-regulates activity
| 0.464
|
LETM1 was co-precipitated with BCS1L and formation of the LETM1 complex depended on BCS1L levels, suggesting that BCS1L stimulates the assembly of the LETM1 complex.
|
SIGNOR-262543
|
Q9NZC7
|
P12931
| 0
|
phosphorylation
|
up-regulates
| 0.48
|
The tyrosine kinase, src, phosphorylates wwox at tyrosine 33 in the first ww domain and enhances its binding to p73.
|
SIGNOR-123819
|
P12931
|
P05107
| 1
|
phosphorylation
|
down-regulates activity
| 0.449
|
PTKs of the JAK and SRC families have a regulatory role in LFA-1 affinity triggering, with JAKs showing a positive role (3), whereas SRCs possibly have a negative role.
|
SIGNOR-254740
|
P20309
|
P50148
| 2
|
binding
|
up-regulates activity
| 0.579
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257018
|
P01584
|
P14778
| 2
|
binding
|
up-regulates activity
| 0.906
|
Pro-IL-1beta, mIL-1beta and mIL-beta all bind to IL-1RI, which recruits the IL-1 receptor accessory protein (IL-1RAcP) as a co-receptor.
|
SIGNOR-249511
|
O96017
|
Q9UQ84
| 1
|
phosphorylation
|
down-regulates activity
| 0.565
|
Inhibition of Exo1 activity by the DDR kinase Rad53.|Unlike Sae2/CtIP activation by CDK, Exo1 phosphorylation by Rad53 limits extended resection of ssDNA at uncapped telomeres and consequently minimizes further activation of the DDR.
|
SIGNOR-279028
|
O43353
|
Q8N2H9
| 0
|
ubiquitination
|
up-regulates activity
| 0.374
|
Pellino3 directly bound to the kinase RIP2 and catalyzed its ubiquitination
|
SIGNOR-280452
|
P16144
|
P42338
| 2
|
binding
|
up-regulates
| 0.2
|
Stable expression of alpha6beta4 increased carcinoma invasion in a pi3k-dependent manner, and transient expression of a constitutively active pi3k increased invasion in the absence of alpha6beta4. Ligation of alpha6beta4 stimulated significantly more pi3k activity than ligation of beta1 integrins, establishing specificity among integrins for pi3k activation.
|
SIGNOR-54615
|
P03209
|
Q92985
| 1
|
transcriptional regulation
|
down-regulates quantity by repression
| 0.2
|
EBV Rta selectively down-regulates the expression of IRF3 and IRF7, the main regulators of the Type I IFNs.
|
SIGNOR-266645
|
P63092
|
P32239
| 2
|
binding
|
up-regulates activity
| 0.264
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ‚â• -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ‚â• -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ‚â• -1.0.
|
SIGNOR-256765
|
Q9Y5G7
|
Q9Y5I2
| 2
|
binding
|
up-regulates activity
| 0.2
|
The clustered protocadherins comprise the largest subfamily of the cadherin superfamily and are predominantly expressed in the nervous system. Pcdh-alpha proteins interact with beta1-integrin to promote cell adhesion. They also form oligomers with Pcdh-gamma proteins at the same membrane sites.
|
SIGNOR-265716
|
P19793
|
P55055
| 2
|
binding
|
up-regulates
| 0.694
|
We provide genetic and molecular evidence that cholesterol homeostasis in scs does not require pparalpha and beta, but depends upon the tif2 coactivator and rxrbeta/lxrbeta heterodimers, in which rxrbeta af-2 is transcriptionally active.
|
SIGNOR-123091
|
Q6XZF7
|
P60953
| 1
|
guanine nucleotide exchange factor
|
up-regulates activity
| 0.572
|
We therefore developed a screening-compatible live-cell imaging assay, using FRET-based biosensors for the prototype GTPases RHOA, RAC1 and CDC4215,19,20 (Extended Data Fig. 2 and Supplementary Note 1)|We found catalytic activities for 45/75 RhoGEFs and 48/63 RhoGAPs| Our data thus not only reveal extensive promiscuity among regulators, but also that the inactivating RhoGAPs are less selective than the activating RhoGEFs (p-value=0.02)(Supplementary Table 2).
|
SIGNOR-260547
|
Q9BY41
|
Q9UPR3
| 2
|
binding
|
up-regulates quantity by stabilization
| 0.642
|
Here, we report that the human ortholog of the yeast ever-shorter telomeres 1B (EST1B) binds HDAC8. This interaction is regulated by protein kinase A-mediated HDAC8 phosphorylation and protects human EST1B (hEST1B) from ubiquitin-mediated degradation.
|
SIGNOR-272650
|
P18850
|
Q16539
| 0
|
phosphorylation
|
up-regulates activity
| 0.585
|
This observation not only confirms the specific role for IFN-γ-induced p38 MAPK-dependent phosphorylation of ATF6 at the T166 site but also indicates a connection between phosphorylation and proteolytic activation.
|
SIGNOR-276841
|
P45984
|
O95140
| 1
|
phosphorylation
|
down-regulates
| 0.351
|
Jnk phosphorylation of mitofusin 2 in response to cellular stress leads to recruitment of the ubiquitin ligase (e3) huwe1/mule/arf-bp1/hecth9/e3histone/lasu1 to mitofusin 2, with the bh3 domain of huwe1 implicated in this interaction. This results in ubiquitin-mediated proteasomal degradation of mitofusin 2these data establish that mfn2 is phosphorylated on ser27 in response to a variety of cellular stresses and implicate jnk in this process
|
SIGNOR-198054
|
P0DP25
|
Q8N5S9
| 2
|
binding
|
up-regulates
| 0.608
|
The binding of Ca2+/CaM to CaM-KK is absolutely required for its activation and efficient phosphorylation of target protein kinases
|
SIGNOR-266344
|
P11142
|
Q99942
| 2
|
binding
|
up-regulates activity
| 0.387
|
JB12 cooperates with cytosolic Hsc70 and the ubiquitin ligase RMA1 to target CFTR and CFTRΔF508 for degradation. JB12 drives Hsc70 to associate with CFTR and the RMA1 E3 complex
|
SIGNOR-271493
|
Q92918
|
Q16584
| 1
|
phosphorylation
|
up-regulates
| 0.574
|
Hpk1 also phosphorylated mlk-3 activation loop in vitro, and ser281 was found to be the major phosphorylation site, indicating that hpk1 also activates mlk-3 via phosphorylation of the kinase activation loop.
|
SIGNOR-83415
|
Q7KZF4
|
Q12772
| 0
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.342
|
These findings reveal that SREBP-2 and SREBP-1 bind to specific sites in SND1 promoter and regulate SND1 transcription in opposite ways; it is induced by SREBP-2 activating conditions and repressed by SREBP-1 overexpression.
|
SIGNOR-259136
|
Q14289
|
P12931
| 0
|
phosphorylation
|
up-regulates
| 0.624
|
These data indicate that pyk2 activation via phosphorylation at tyr-402 requires ?V?3 Ligation and src activity.
|
SIGNOR-133870
|
O75676
|
P18846
| 1
|
phosphorylation
|
up-regulates
| 0.615
|
Msk1 and msk2 directly phosphorilate and activate transcription factors such as creb1, atf1.
|
SIGNOR-116252
|
Q13153
|
P53350
| 1
|
phosphorylation
|
up-regulates
| 0.552
|
We show here that pak1 is required for cell proliferation, mitotic progression and plk1 activity in hela cells. phosphorylation of plk1 on ser 49 is important for metaphase-associated events.
|
SIGNOR-178353
|
Q96PU5
|
Q14524
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.464
|
The control of Nav density at the cell membrane is crucial to ensuring normal neuronal excitability. Navs are subject to posttranslational modifications that may influence their cell membrane availability. Ubiquitylation is a key process that orchestrates the internalization and subsequent degradation or recycling of Navs. This is accomplished by ubiquitin protein ligases, such as NEDD4-2 (neuronal precursor cell expressed developmentally downregulated-4 type 2).
|
SIGNOR-253456
|
O75376
|
Q96EB6
| 0
| null |
up-regulates
| 0.621
|
In differentiated adipocyte cell lines, SIRT1 inhibits adipogenesis and enhances fat mobilization through lipolysis by suppressing the activity of PPARγ. SIRT1 achieves this by promoting the assembly of a corepressor complex, involving NCoR1 and SMRT, on the promoters of PPARγ target genes to repress their transcription.
|
SIGNOR-253505
|
Q8IYT8
|
Q8TDY2
| 1
|
phosphorylation
|
up-regulates activity
| 0.747
|
When mTOR is inhibited, ULK1 and ULK2 activate and phosphorylate ATG13 and FIP200.
|
SIGNOR-280159
|
Q9NQU5
|
P15976
| 1
|
phosphorylation
|
up-regulates activity
| 0.2
|
In addition, PAK5 knockdown also markedly reduced the association of GATA1 with HDAC3/4.|PAK5 phosphorylates the transcription factor GATA1 mainly at Ser161 and Ser 187, phosphorylated GATA1 recruits more HDAC3/4 to the promoter of E-cadherin and consequently suppresses the transcription of E-cadherin gene and promotes the EMT of breast cancer cells.
|
SIGNOR-278415
|
Q9UQB8
|
Q8N8S7
| 2
|
binding
|
up-regulates activity
| 0.569
|
We conclude that the interaction of Cdc42 with the partial CRIB motif of IRSp53 relieves an intramolecular, autoinhibitory interaction with the N terminus, allowing the recruitment of Mena to the IRSp53 SH3 domain. This IRSp53:Mena complex initiates actin filament assembly into filopodia.
|
SIGNOR-268423
|
O00408
|
P17612
| 2
|
binding
|
down-regulates activity
| 0.368
|
We show that caffeine, by inhibiting PDE2, enhances PKA phosphorylation leading to mitochondrial NCLX activation, thereby reducing neuronal excitotoxicity and enhancing learning in mice.
|
SIGNOR-275730
|
P46531
|
P80370
| 2
|
binding
|
down-regulates activity
| 0.518
|
Moreover, the interaction of DLK1 with NOTCH1 caused an inhibition of basal NOTCH signaling in preadipocytes and mesenchymal multipotent cells. In this work, we demonstrate, for the first time, that DLK2 interacts with itself, with DLK1, and with the same NOTCH1 receptor region as DLK1 does. We demonstrate also that the interaction of DLK2 with NOTCH1 similarly results in an inhibition of NOTCH signaling in preadipocytes and Mouse Embryo fibloblasts.
|
SIGNOR-172830
|
Q03113
|
P41968
| 2
|
binding
|
up-regulates activity
| 0.25
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257407
|
Q13257
|
O43683
| 0
|
relocalization
|
up-regulates activity
| 0.96
|
Spindle checkpoint protein Bub1 is required for kinetochore localization of Mad1, Mad2, Bub3, and CENP-E, independently of its kinase activity
|
SIGNOR-252018
|
P42345
|
O00141
| 1
|
phosphorylation
|
up-regulates
| 0.849
|
Mtor phosphorylated sgk1, but not sgk1-s422a, in vitro. Sgk1 phosphorylated p27 in vitro. These data implicate sgk1 as an mtorc1 (mtor-raptor) substrate. mtor may promote g1 progression in part through sgk1 activation
|
SIGNOR-179113
|
P19022
|
Q4KMG0
| 2
|
binding
|
up-regulates
| 0.648
|
We report here that n-cadherin ligation activates p38alpha/beta in myoblasts in a cdo-, bnip-2-, and jlp-dependent manner
|
SIGNOR-163844
|
P49841
|
Q13469
| 1
|
phosphorylation
|
down-regulates
| 0.561
|
Gsk3 was previously shown to directly phosphorylate the n-terminal regulatory domain of nfatc1, thus antagonizing the action of calcineurin and inhibiting nuclear shuttling of nfat.
|
SIGNOR-179784
|
P67870
|
P06493
| 0
|
phosphorylation
|
up-regulates
| 0.459
|
In cells, the casein kinase ii beta-subunit is phosphorylated at an autophosphorylation site and at a site (ser-209) that is maximally phosphorylated in mitotic cells. These studies provide strong biochemical evidence that p34cdc2 is the enzyme that phosphorylates ser-209 on the beta-subunit of ckii in mitotic cells.
|
SIGNOR-29462
|
Q9GZT9
|
Q16665
| 1
|
hydroxylation
|
down-regulates quantity by destabilization
| 0.918
|
Hypoxia-inducible factor-1 (HIF-1) is a key regulator of erythropoiesis. In this article, we report 3 novel mutations, P378S, A385T, and G206C, on the EGLN1 gene encoding the negative HIF-1α regulator prolyl hydroxylase domain-2 (PHD2) in 3 patients with isolated erythrocytosis. These mutations impair PHD2 protein stability and partially reduce PHD2 activity, leading to increased HIF-1α protein levels in cultured cells.|Oxygen-dependent hydroxylation by the prolyl hydroxylase domain-2 (PHD2) protein marks HIF-1alpha for ubiquitination by the von Hippel Lindau (VHL) tumor suppressor protein, leading to proteasomal degradation
|
SIGNOR-261994
|
O75582
|
P27361
| 0
|
phosphorylation
|
up-regulates
| 0.585
|
In the present study, we show that, in addition to being phosphorylated on thr-581 and ser-360 by erk1/2 or p38, msk1 can autophosphorylate on at least six sites: ser-212, ser-376, ser-381, ser-750, ser-752 and ser-758.
|
SIGNOR-131379
|
Q9NYL2
|
P45985
| 1
|
phosphorylation
|
up-regulates activity
| 0.2
|
We show here that members of the mixed-lineage kinase (MLK) family (including MLK1, MLK2, MLK3, and dual leucine zipper kinase [DLK]) are expressed in neuronal cells and are likely to act between Rac1/Cdc42 and MKK4 and -7 in death signaling.
|
SIGNOR-243348
|
Q9UP38
|
Q92997
| 2
|
binding
|
up-regulates activity
| 0.657
|
Upon ligand binding, DVL proteins are recruited to Frizzled receptors at the plasma membrane and co-recruit cytoplasmic transducers, such as Axin, CK1 and GSK3 binding protein (GBP), presumably along with their partners, to promote ?-catenin-dependent signalling.
|
SIGNOR-258953
|
Q9P2J3
|
P49716
| 2
|
binding
|
down-regulates quantity by destabilization
| 0.251
|
KLHL9 mediates poly-ubiquitylation of C/EBPβ and C/EBPδ isoforms. We confirmed KLHL9 deletions in an independent cohort and showed that this protein is necessary for Cul3-ligase mediated ubiquitylation and proteasomal degradation of established MES-GBM MRs, C/EBPβ and C/EBPδ.
|
SIGNOR-272459
|
P14373
|
O00750
| 1
|
ubiquitination
|
down-regulates
| 0.402
|
We now show that trim27 functions as an e3 ligase and mediates lysine 48 polyubiquitination of pi3kc2_, leading to a decrease in pi3k enzyme activity.
|
SIGNOR-177935
|
Q07889
|
P01112
| 1
|
guanine nucleotide exchange factor
|
up-regulates activity
| 0.892
|
The enhancement of H-Ras GTP levels induced by oncogenic K-Ras was abrogated when the expression of endogenous Sos was suppressed, implicating Sos as an essential intermediate in the cross talk between oncogenic K-Ras and WT H-Ras.
|
SIGNOR-59472
|
P06493
|
P62136
| 1
|
phosphorylation
|
down-regulates activity
| 0.575
|
Both of these pp1 isoforms contain an arg-pro-ile/val-thr-pro-pro-arg sequence near the c terminus, a known site of phosphorylation by cdc/cdk kinases, and phosphorylation attenuates phosphatase activity.
|
SIGNOR-151799
|
P51684
|
P14780
| 1
| null |
up-regulates activity
| 0.2
|
We hypothesized that MIP-3alpha promotes pancreatic cancer invasion through the up-regulation of MMP-9, a Type 4 collagenase.
|
SIGNOR-278042
|
P54646
|
Q00535
| 0
|
phosphorylation
|
down-regulates activity
| 0.216
|
In vitro, the results show that murine wild-type AMPK-alpha2 was phosphorylated by Cdk5 at a (S/T) PX (K/H/R) phosphorylation consensus sequence, which was associated with decreased AMPK-alpha2 activity.|Inactivated AMPK-alpha2 promotes the progression of diabetic brain damage by Cdk5 phosphorylation at Thr485 site.
|
SIGNOR-280218
|
P12931
|
Q7L0Q8
| 1
|
phosphorylation
|
down-regulates activity
| 0.534
|
Regulation of the Rho family small GTPase Wrch-1/RhoU by C-terminal tyrosine phosphorylation requires Src. Phosphorylation at Y254 negatively regulates Wrch-1-mediated biological functions.Serum-stimulated tyrosine phosphorylation and relocalization of Wrch-1 decreases its activation of downstream effectors in a Y254-dependent manner.
|
SIGNOR-259814
|
P26232
|
P46937
| 2
|
binding
|
down-regulates
| 0.329
|
The trimeric complex of alfa-catenin, 14-3-3, and yap sequesters yap at ajs and prevents yap dephosphorylation/activation.
|
SIGNOR-201245
|
Q9HAW4
|
O14757
| 2
|
binding
|
up-regulates
| 0.794
|
Binding of claspin to xchk1 is highly elevated in the presence of dna templates that trigger a checkpoint arrest of the cell cycle in xenopus egg extracts
|
SIGNOR-84474
|
P31749
|
P18031
| 2
|
phosphorylation
|
down-regulates activity
| 0.742
|
Phosphorylation of ptp1b at ser(50) by akt impairs its ability to dephosphorylate the insulin receptor.
|
SIGNOR-252542
|
O75197
|
Q9H1J5
| 2
|
binding
|
up-regulates
| 0.633
|
Wnt proteins bind to the frizzled receptors and lrp5/6 co-receptors, and through stabilizing the critical mediator betBeta-catenin, initiate a complex signaling cascade that plays an important role in regulating cell proliferation and differentiation.
|
SIGNOR-131987
|
P09493
|
P42336
| 0
|
phosphorylation
|
up-regulates activity
| 0.2
|
Here, we demonstrate a requirement for the protein kinase activity of PI(3)K in agonist-dependent beta-adrenergic receptor (betaAR) internalization. Using PI(3)K mutants with either protein or lipid phosphorylation activity, we identify the cytoskeletal protein non-muscle tropomyosin as a substrate of PI(3)K, which is phosphorylated in a wortmannin-sensitive manner on residue Ser 61. A constitutively dephosphorylated (S61A) tropomyosin mutant blocks agonist-dependent betaAR internalization, whereas a tropomyosin mutant that mimics constitutive phosphorylation (S61D) complements the PI(3)K mutant, with only lipid phosphorylation activity reversing the defective betaAR internalization.
|
SIGNOR-263027
|
P50281
|
Q99558
| 0
|
phosphorylation
|
up-regulates activity
| 0.2
|
A post-transcriptional process is indicated because we observed that NIK increases MT1-MMP phosphorylation and activity, but does not affect MT1-MMP mRNA expression (XREF_FIG and XREF_FIG).|NIK increases MT1-MMP pseudopodial localization and enzymatic activity.
|
SIGNOR-279631
|
O14654
|
P78368
| 0
|
phosphorylation
|
down-regulates quantity by destabilization
| 0.2
|
IRS4 was phosphorylated at Ser859 by CK1γ2 in vitro and in vivo, which promoted the polyubiquitination and degradation of IRS4 through the ubiquitin/lysosome pathway by the carboxyl terminus of Hsc70-interacting protein(CHIP).
|
SIGNOR-277615
|
P62807
|
Q14493
| 0
|
translation regulation
|
up-regulates quantity by expression
| 0.2
|
Synthesis of mature histone mRNA requires only a single processing reaction: an endonucleolytic cleavage between a conserved stem-loop and a purine-rich downstream element to form the 3' end. The stem-loop binding protein (SLBP) is required for processing, and following processing, histone mRNA is transported to the cytoplasm, where SLBP participates in translation of the histone mRNA|We used radiolabeled probes generated by PCR targeting the open reading frame (ORF) to detect histones H2A, H2B, H3, H4, and H1 and used 7SK snRNA as a loading control (Fig. 2A). The abundance of histone H2A, H2B, H3, and H4 mRNAs is reduced to 37% to 70% of control levels in the SLBP knockdown cells when compared to the C2 control.
|
SIGNOR-265377
|
Q9UI12
|
P36897
| 2
|
binding
|
up-regulates activity
| 0.2
|
ATP6V1H interacts with TGF-β receptor I and AP-2 complex to regulate the proliferation and differentiation of BMSCs.
|
SIGNOR-266886
|
P32927
|
P29350
| 0
|
dephosphorylation
|
down-regulates
| 0.522
|
However, inhibition of shp2 binding to betac, did not prevent tyrosine phosphorylation of shp2. Interestingly, this same phosphopeptide served as a substrate for the tyrosine phosphatase activity of both shp1 and shp2.
|
SIGNOR-114597
|
P06493
|
Q86WB0
| 1
|
phosphorylation
|
down-regulates
| 0.253
|
Moreover, we found cyclin b1/cdk1 to phosphorylate nipa at ser-395 in mitosis. Mutation of both ser-359 and ser-395 impaired effective inactivation of the scfnipa complex, resulting in reduced levels of mitotic cyclin b1
|
SIGNOR-154047
|
O95983
|
O14965
| 0
|
phosphorylation
|
up-regulates
| 0.286
|
These results suggest that the biochemical changes of mbd3 may be intimately related to the targeting of mbd3 to centrosomes. aurora-a phosphorylates mbd3
|
SIGNOR-93693
|
P61978
|
P45983
| 0
|
phosphorylation
|
up-regulates
| 0.372
|
The current studies demonstrate the identification of hnrnp-k as a jnk and erk substrate. The phosphoacceptor sites for jnk and erk on the k protein are different, and indeed, erk phosphorylation results in biological consequences different from those of phosphorylation by jnk (49). Whereas erk phosphorylation on aa 284 and 353 contributes to k protein nuclear export and concomitant inhibition of rna translation (49), phosphorylation by k protein on aa 216 and 353 increases the transcriptional effects of the k protein.
|
SIGNOR-105770
|
Q9UQB3
|
Q96RT1
| 2
|
binding
|
up-regulates activity
| 0.2
|
We characterized the interactions between the Erbin PDZ domain and both ARVCF and δ-catenin in vitro and in vivo. endogenous δ-catenin and Erbin co-localized in and co-immunoprecipitated from neurons. These results suggest that δ-catenin and ARVCF may function to mediate the association of Erbin with the junctional cadherin-catenin complex.
|
SIGNOR-252120
|
P06493
|
P10275
| 1
|
phosphorylation
|
up-regulates
| 0.53
|
At first, the data show that cdk5 enables phosphorylation of ar at ser-81 site through direct biochemical interaction and, therefore, results in the stabilization of ar proteins although ar was reported as substrates for cdk9 (5) as well as cdk1
|
SIGNOR-175692
|
P50148
|
Q96LB1
| 2
|
binding
|
up-regulates activity
| 0.2
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257385
|
Q13233
|
Q8IVH8
| 0
|
phosphorylation
|
up-regulates
| 0.453
|
With regard to at least mekk1, serine/threonine kinases such as nik,glkand hpk1 appear also to be important for regulation
|
SIGNOR-61814
|
Q07812
|
O60260
| 0
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.2
|
The E3 ligase parkin, which is known to trigger mitochondria specific autophagy, ubiquitylates BAX K128 and targets the pro apoptotic BCL-2 protein for proteasomal degradation.
|
SIGNOR-278529
|
P33981
|
P00519
| 1
|
phosphorylation
|
down-regulates
| 0.279
|
Ttk phosphorylation of thr735 was associated with partial inhibition of nuclear targeting of c-abl.
|
SIGNOR-181064
|
P48729
|
Q969R2
| 1
|
phosphorylation
|
up-regulates activity
| 0.2
|
CK1a1, JNK1 and CDK1 had the highest site-specific activity for ORP4L, while CDK1, GSK3a, CK1a1 and GSK3b showed the highest specificity for the site when corrected for background activity with ORP4L-S4A. Because of the complexity of the serine/proline-rich site, we did not determine which serine(s) in ORP4L were phosphorylated by candidate kinases.|We conclude that phosphorylation of a unique serine/proline motif in the ORD induces a conformation change in ORP4L that enhances interaction with vimentin and cholesterol extraction from membranes.
|
SIGNOR-264877
|
Q5JTC6
|
P49841
| 1
|
relocalization
|
up-regulates activity
| 0.419
|
Amer1 binds ck1gamma, recruits axin and gsk3beta to the plasma membrane and promotes complex formation between axin and lrp6.
|
SIGNOR-171892
|
P53350
|
Q14790
| 1
|
phosphorylation
|
down-regulates quantity by destabilization
| 0.371
|
By phosphorylating S387 in procaspase-8 Cdk1/cyclin B1 generates a phospho-epitope for the binding of the PBD of Plk1. Subsequently, S305 in procaspase-8 is phosphorylated by Plk1 during mitosis. Using an RNAi-based strategy we could demonstrate that the extrinsic cell death is increased upon Fas-stimulation when endogenous caspase-8 is replaced by a mutant (S305A) mimicking the non-phosphorylated form. Together, our data show that sequential phosphorylation by Cdk1/cyclin B1 and Plk1 decreases the sensitivity of cells toward stimuli of the extrinsic pathway during mitosis.
|
SIGNOR-272989
|
Q8N1E6
|
P01106
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.349
|
In this study, we demonstrate that the deubiquitinase USP13 stabilizes c-Myc by antagonizing FBXL14-mediated ubiquitination to maintain GSC self-renewal and tumorigenic potential. USP13 was preferentially expressed in GSCs, and its depletion potently inhibited GSC proliferation and tumor growth by promoting c-Myc ubiquitination and degradation.
|
SIGNOR-274125
|
Q16236
|
Q14145
| 0
|
ubiquitination
|
down-regulates quantity
| 0.813
|
Keap1 is a substrate receptor of a Cul3-RING ubiquitin ligase (CRL3) that, in physiological conditions, constitutively binds and targets Nrf2 for degradation
|
SIGNOR-259335
|
P31751
|
Q09472
| 1
|
phosphorylation
|
up-regulates
| 0.327
|
We find that suberoylanilide hydroxamic acid stimulates akt activity, which is required to phosphorylate p300 at ser(1834). Akt-mediated phosphorylation of p300 dramatically increases its acetyltransferase activity
|
SIGNOR-148987
|
P51948
|
P04637
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.351
|
Collectively, these results indicate that MNAT1 increases p53 ubiquitination, thus promoting its proteasomal degradation.|These suggest that MNAT1 decreases p53 expression by the proteasome.
|
SIGNOR-278831
|
P03372
|
O14965
| 0
|
phosphorylation
|
up-regulates activity
| 0.357
|
Based on these findings, we conclude that ER\u03b1-Ser167 and -Ser305 are phosphorylated by Aurora-A in vitro and in vivo .|These data suggest that Aurora-A not only activates ER\u03b1 activity but also enhances E2 action and that Aurora-A-induced ER\u03b1 activation could not be inhibited by tamoxifen.
|
SIGNOR-278508
|
Q16539
|
Q06413
| 1
|
phosphorylation
|
up-regulates activity
| 0.696
|
We found that in monocytic cells, lps increases the transactivation activity of mef2c through p38-catalysed phosphorylation.
|
SIGNOR-47136
|
P00533
|
Q12913
| 0
|
dephosphorylation
|
up-regulates quantity by stabilization
| 0.49
|
We report the identification of PTPRK and PTPRJ (density-enhanced phosphatase-1 [DEP-1]) as EGFR-targeting phosphatases. DEP-1 is a tumor suppressor that dephosphorylates and thereby stabilizes EGFR by hampering its ability to associate with the CBL-GRB2 ubiquitin ligase complex|By employing commercially available antibodies, which are supposed to recognize specific tyrosine phosphorylation sites of EGFR, we found that depletion of endogenous DEP-1 nonselectively increased receptor phosphorylation, affecting all three sites we analyzed (tyrosines 1045, 1068, and 1173
|
SIGNOR-248697
|
O15130
|
Q9GZQ6
| 2
|
binding
|
up-regulates
| 0.747
|
Npff specifically bound to npff1 (k(d) = 1.13 nm) and npff2 (k(d) = 0.37 nm), and both receptors were activated by npff in a variety of heterologous expression systems
|
SIGNOR-82916
|
P05106
|
O15530
| 0
|
phosphorylation
|
down-regulates activity
| 0.473
|
PDK1 specifically phosphorylates Thr-753 in 3. Our data argue that phosphorylation of Thr-753, which is conserved in many subunits, reduces the ability of PTB-containing proteins to bind the NXX(pY) motif in 3.
|
SIGNOR-250266
|
O14965
|
Q8TEP8
| 2
|
phosphorylation
|
up-regulates activity
| 0.796
|
Thus, following their sequential activation in Cep192 complexes, both AurA and Plx1 phosphorylate Cep192.|We found that Cep192 1\u20131000 -wt promoted AurA and Plx1 activation and itself underwent phosphorylation irrespective of whether it was bound to the endogenous or recombinant Plx1 (i.e. whether Plx1 was docked onto T46 or not) (lanes 6 and 8).
|
SIGNOR-279797
|
P68400
|
Q9UNN5
| 1
|
phosphorylation
|
down-regulates activity
| 0.326
|
We previously identified the Fas-associated factor FAF1 as an in vitro substrate of protein kinase CK2 and determined Ser289 and Ser291 as phosphorylation sites.|Therefore we assume that CK2‐mediated FAF1 phosphorylation influences the nuclear localization of FAF1 | it implies that the major function of FAF1 might not be in the cytoplasm as an interacting partner of Fas.
|
SIGNOR-250864
|
P08238
|
Q75N03
| 2
|
binding
|
up-regulates quantity
| 0.2
|
By immunoprecipitation, we present evidence that Hakai interacts with Hsp90 chaperone complex in several epithelial cells and demonstrate that is a novel Hsp90 client protein. Interestingly, by overexpressing and knocking-down experiments with Hakai, we identified Annexin A2 as a Hakai-regulated protein. Interestingly, geldanamycin-induced Hakai degradation is accompanied by an increased expression of E-cadherin and Annexin A2. Hsp90 participates in the correct folding of its client proteins, allowing them to maintain their stability and activity.
|
SIGNOR-271475
|
P68036
|
O60260
| 1
|
ubiquitination
|
up-regulates activity
| 0.2
|
Only UbcH5 and Related Class I E2s Support Ubiquitination of S5a—UbcH5 belongs to the Class I family of E2s which contains a catalytic core (UBC domain) without a distinct Ub binding domain (38). To test whether other Class I E2s can also support ubiquitination of S5a, we assayed the ubiquitination of S5a with UbcH7 and the E3s, Nedd4, or Parkin. With either of these E3s, UbcH7 supported ubiquitination of S5a (Fig. 8, A and B). In addition, another Class I E2, Ubc4, a close homolog of UbcH5, supported ubiquitination of S5a by the APC, a multimeric Ring finger E3 responsible for cell cycle progression through mitosis (39) (Fig. 8C). Thus, multiple Class I E2s can support ubiquitination of S5a by various types of E3s (Table 1).
|
SIGNOR-272734
|
P45983
|
Q01094
| 1
|
phosphorylation
|
down-regulates activity
| 0.277
|
JNK1 phosphorylates E2F1 in vitro, and co-transfection of JNK1 reduces the DNA binding activity of E2F1
|
SIGNOR-279218
|
P50148
|
P55085
| 2
|
binding
|
up-regulates activity
| 0.406
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257300
|
Q13588
|
P29353
| 2
|
binding
|
up-regulates
| 0.506
|
T cell activation effects an increase in grap association with p36/38, shc, sos, and dynamin.
|
SIGNOR-45528
|
P17612
|
P27987
| 1
|
phosphorylation
|
down-regulates activity
| 0.351
|
Two isoforms of the inositol 1,4,5-trisphosphate 3-kinase have been identified, the A form and the B form. phosphorylation of isoform A by the cyclic AMP-dependent protein kinase increased activity 1.5-fold, whereas phosphorylation of isoform B decreased activity by 45%. major phosphorylation sites in the protein are Ser119 for PKA. Ser119 in the A isoform is conserved in the B isoform as Ser328
|
SIGNOR-249995
|
O43561
|
P19174
| 2
|
binding
|
up-regulates activity
| 0.808
|
By substituting these tyrosine residues in LAT with phenylalanine and by utilizing phosphorylated peptides derived from these sites, we mapped the tyrosine residues in LAT required for the direct interaction and activation of Vav, p85/p110alpha and phospholipase Cgamma1 (PLCgamma1). Our results indicate that Tyr(226) and Tyr(191) are required for Vav binding, whereas Tyr(171) and Tyr(132) are necessary for association and activation of phosphoinositide 3-kinase activity and PLCgamma1 respectively.
|
SIGNOR-246060
|
Q93079
|
Q14493
| 0
|
translation regulation
|
up-regulates quantity by expression
| 0.2
|
Synthesis of mature histone mRNA requires only a single processing reaction: an endonucleolytic cleavage between a conserved stem-loop and a purine-rich downstream element to form the 3' end. The stem-loop binding protein (SLBP) is required for processing, and following processing, histone mRNA is transported to the cytoplasm, where SLBP participates in translation of the histone mRNA|We used radiolabeled probes generated by PCR targeting the open reading frame (ORF) to detect histones H2A, H2B, H3, H4, and H1 and used 7SK snRNA as a loading control (Fig. 2A). The abundance of histone H2A, H2B, H3, and H4 mRNAs is reduced to 37% to 70% of control levels in the SLBP knockdown cells when compared to the C2 control.
|
SIGNOR-265391
|
Q9NQ66
|
Q92997
| 0
| null |
up-regulates activity
| 0.347
|
Dsh through PLC activates IP3, which leads to release of intracellular Ca2+, which in turn activates CamK11 and calcineurin
|
SIGNOR-258980
|
O95714
|
P23025
| 1
|
ubiquitination
|
down-regulates
| 0.385
|
Herc2 may ubiquitinate xpa and thus target it for proteolytic degradation
|
SIGNOR-164595
|
Q9BSI4
|
P08047
| 0
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.2
|
Transfection of a plasmid carrying the Sp1 transcription factor into Sp-deficient SL2 cells strongly activated TIN2 promoter-driven luciferase reporter expression.
|
SIGNOR-271698
|
O43164
|
P10644
| 1
|
polyubiquitination
|
down-regulates quantity by destabilization
| 0.379
|
Praja2 controls the stability of PKA regulatory subunits. Praja2 ubiquitylates RIIα/β subunits. Subunits
|
SIGNOR-271855
|
P15941
|
P12931
| 0
|
phosphorylation
|
up-regulates
| 0.444
|
The c-src tyrosine kinase regulates signaling of the human df3/muc1 carcinoma-associated antigen with gsk3 beta and betBeta-catenin c-src phosphorylates the muc1 cytoplasmic domain at a yekv motif c-src-mediated phosphorylation of muc1 increases binding of muc1 and betBeta-catenin
|
SIGNOR-85938
|
P01106
|
P24941
| 0
|
phosphorylation
|
up-regulates quantity by stabilization
| 0.749
|
Cdk2 phosphorylates c-Myc at Ser62 to suppress its ubiquitination modification/degradation, resulting in enhanced stability of c-Myc [ xref ].
|
SIGNOR-279808
|
P12830
|
P68400
| 0
|
phosphorylation
|
up-regulates activity
| 0.401
|
Casein kinase II phosphorylation of E-cadherin increases E-cadherin/beta-catenin interaction and strengthens cell-cell adhesion. | Under these conditions, phosphorylation of the E-cadherin double mutant S853A/S855A was reduced by 25% as compared with wt E-cadherin. | Expression of the E-cadherin double mutant S853A/S855A in NIH3T3 cells expressing Wnt-1 reduces cell-cell adhesion.
|
SIGNOR-250840
|
Q75N03
|
P07355
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.2
|
By immunoprecipitation, we present evidence that Hakai interacts with Hsp90 chaperone complex in several epithelial cells and demonstrate that is a novel Hsp90 client protein. Interestingly, by overexpressing and knocking-down experiments with Hakai, we identified Annexin A2 as a Hakai-regulated protein. Interestingly, geldanamycin-induced Hakai degradation is accompanied by an increased expression of E-cadherin and Annexin A2.
|
SIGNOR-271473
|
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