IdA
stringlengths 6
21
| IdB
stringlengths 6
21
| labels
int64 0
2
| mechanism
stringclasses 40
values | effect
stringclasses 10
values | score
float64 0.1
0.99
⌀ | sentence
stringlengths 10
1.63k
⌀ | signor_id
stringlengths 12
14
|
|---|---|---|---|---|---|---|---|
P14921
|
P04637
| 2
|
binding
|
down-regulates activity
| 0.53
|
We demonstrate that p53 and ets-1 coregulate TXSA in an antagonistic and inter-related manner, with ets-1 being a potent transcriptional activator and p53 inhibiting ets-1-dependent transcription. We show that ets-1 and p53 associate physically in vitro and in vivo and that their interaction, rather than a direct binding of p53 to the TXSA promoter, is required for transcriptional repression of TXSA by wild-type p53.
|
SIGNOR-254087
|
O94979
|
Q53G59
| 2
|
binding
|
up-regulates activity
| 0.606
|
By analyzing mouse embryonic stem cell (mESC) division, we have identified Cul3Klhl12 as a regulator of COPII coat formation. Cul3Klhl12 monoubiquitinates Sec31 and drives assembly of large COPII-coats. As a result, ubiquitination by Cul3Klhl12 is essential for collagen export, a step that is required for integrin-dependent mESC division.
|
SIGNOR-272010
|
O75151
|
P84243
| 1
|
demethylation
|
up-regulates activity
| 0.2
|
PHF2, a jmjC demethylase, is enzymatically inactive by itself, but becomes an active H3K9Me2 demethylase through PKA-mediated phosphorylation. This modification leads to targeting of the PHF2–ARID5B complex to its target promoters, where it removes the repressive H3K9Me2 mark.
|
SIGNOR-264518
|
Q9UMS4
|
P15927
| 1
|
polyubiquitination
|
up-regulates activity
| 0.48
|
PRP19 is a ubiquitin ligase involved in pre-mRNA splicing and the DNA damage response (DDR). PRP19 ubiquitylates RPA and promotes ATRIP recruitment.
|
SIGNOR-272075
|
Q9Y2T1
|
P35222
| 2
|
binding
|
down-regulates
| 0.848
|
It has been found that a multiprotein complex assembled by the cytoplasmic component conductin induces degradation of cytoplasmic beta-catenin. The complex includes apc, the serine/threonine kinase gsk3 beta, and beta-catenin, which bind to conductin at distinct domains.
|
SIGNOR-79947
|
P22830
|
Q16236
| 0
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.322
|
NFE2L2 is stabilized and translocates to the nucleus, where it dimerizes with sMAF proteins. This complex binds to AREs to mediate the transcription of genes involved in iron metabolism, GSH metabolism, and ROS detoxification.Two critical enzymes in this pathway, ATP binding cassette subfamily B member 6 (ABCB6) and ferrochelatase (FECH), are regulated by the transcription factor NFE2L2 and play significant roles in inhibiting ferroptosis when upregulated.
|
SIGNOR-279865
|
P25490
|
P01106
| 2
|
transcriptional regulation
|
down-regulates quantity by repression
| 0.544
|
Inhibition of transcriptional regulator Yin-Yang-1 by association with c-Myc.Yin-Yang-1 (YY1) regulates the transcription of many genes, including the oncogenes c-fos and c-myc. Depending on the context, YY1 acts as a transcriptional repressor, a transcriptional activator, or a transcriptional initiator. In cotransfections, c-Myc inhibits both the repressor and the activator functions of YY1, which suggests that one way c-Myc acts is by modulating the activity of YY1.
|
SIGNOR-268794
|
Q96RJ3
|
Q13114
| 2
|
binding
|
down-regulates quantity by destabilization
| 0.758
|
Activation of br3 induces recruitment and degradation of traf3.
|
SIGNOR-168199
|
O43464
|
P31751
| 0
|
phosphorylation
|
down-regulates
| 0.2
|
Akt attenuation of the serine protease activity of htra2/omi through phosphorylation of serine 212
|
SIGNOR-153327
|
Q969V6
|
Q16512
| 0
|
phosphorylation
|
down-regulates activity
| 0.2
|
Although RHOA mediated actin polymerization accelerated MRTFA induced gene transcription, PKN1 and PKN2 inhibited the interaction of MRTFA with G-actin by phosphorylating MRTFA, causing increased serum response factor (SRF)-mediated expression of cardiac hypertrophy- and fibrosis associated genes.|Further, we identified MRTFA as a novel substrate of PKN1 and PKN2 and found that MRTFA phosphorylation by PKN was considerably more effective than that by ROCK in vitro .
|
SIGNOR-280067
|
O60716
|
P63000
| 2
|
binding
|
up-regulates
| 0.585
|
We demonstrate that p120-catenin participates in the stimulation of rac1 activity, binding directly to this protein. In addition we show that vav2 also binds to p120-catenin and is required for rac1 activation and for beta-catenin translocation to the nucleus.Vav2 And rac1 association with p120-catenin was modulated by phosphorylation of this protein, which was stimulated upon serine/threonine phosphorylation by ck1 and inhibited by tyrosine phosphorylation by src or fyn
|
SIGNOR-198938
|
O15027
|
Q92734
| 2
|
binding
|
up-regulates
| 0.642
|
We identify tfg-1, a new conserved regulator of protein secretion that interacts directly with sec-16 and controls the export of cargoes from the endoplasmic reticulum in caenorhabditis elegans. Hydrodynamic studies indicate that tfg-1 forms hexamers that facilitate the co-assembly of sec-16 with copii subunits.
|
SIGNOR-173242
|
Q01664
|
P08047
| 2
|
binding
|
up-regulates activity
| 0.356
|
We also observed moderately increased recruitment of CTCF, HDAC1, and SP1 by the full-length AP-4 onto the WT DNA beads.
|
SIGNOR-226593
|
Q5T4S7
|
Q9NQA5
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.246
|
Cytomix induced interaction between TRPV5 and UBR4 (Ubiquitin recoginition 4), an E3 ubiquitin ligase; knockdown of UBR4 with small interfering RNAs prevented cytomix-induced degradation of TRPV5. UBR4/p600 ubiquitin ligase is responsible for TRPV5 ubiquitination and proteasomal degradation in response to cytomix
|
SIGNOR-272117
|
P00519
|
P00519
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
We demonstrate here that autophosphorylation of ABL1 is intermolecular and stimulates Abl catalytic activity.
|
SIGNOR-260781
|
P48729
|
P17931
| 1
|
phosphorylation
|
up-regulates
| 0.308
|
These results indicate that phosphorylation of gal-3 promotes its nuclear export after apoptotic stimuli through enhanced nuclear export.
|
SIGNOR-124583
|
P38936
|
P19174
| 0
|
phosphorylation
|
up-regulates quantity by stabilization
| 0.262
|
Phosphorylation at Ser-146 by PKCδ increases p21 stability
|
SIGNOR-262962
|
P30679
|
P30411
| 2
|
binding
|
up-regulates activity
| 0.426
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257281
|
Q96SB4
|
Q96SB4
| 2
|
phosphorylation
|
up-regulates
| 0.2
|
We found that activated akt binds and induces srpk1 autophosphorylation because akt-mediated phosphorylation depends on the kinase activity of srpk1
|
SIGNOR-197989
|
Q9Y574
|
Q02363
| 1
|
polyubiquitination
|
down-regulates quantity by destabilization
| 0.341
|
Using JAR placental cells, we determined that ASB4 ubiquitinates and represses ID2 expression in a proteasome-dependent fashion.
|
SIGNOR-272053
|
Q969K3
|
Q9UBK2
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.319
|
Mechanistically, PGC1α was phosphorylated at serine (S) 636 by DNA-dependent protein kinase in response to irradiation. Phosphorylation at S636 promoted the degradation of PGC1α by facilitating its binding to the E3 ligase RNF34.
|
SIGNOR-277912
|
Q9BXA7
|
Q9BXA7
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
Electrospray Q‐TOF2 mass spectroscopy analysis of a trypsin digested TSSK1 purified from E. coli, revealed that it was phosphorylated at its T‐loop residue (Fig. 2D), indicating that TSSK1 as was previously shown for MELK [18], can autophosphorylate its T‐loop Thr residue.
|
SIGNOR-260823
|
P08254
|
Q9UGU0
| 0
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.416
|
This result indicates that expression of SPBP is sufficient to transactivate a minimal promoter containing a single copy of the SPRE, as well as the full-length stromelysin promoter.
|
SIGNOR-266223
|
P49910
|
O15105
| 1
|
transcriptional regulation
|
down-regulates quantity by repression
| 0.2
|
ZNF165 drives the unrestrained activation of transforming growth factor β (TGFβ) signalling by directly inactivating the expression of negative feedback pathway regulators, SMURF2, SMAD7 and PMEPA1.
|
SIGNOR-266093
|
P05771
|
P35548
| 1
|
phosphorylation
|
up-regulates quantity
| 0.322
|
PKCbeta increased the level of overexpressed Msx2, but PKC alpha, delta and zeta did not have any significant effects.|Thr135 and Thr141 in Msx2 can be phosphorylated by PKC\u03b2, and Thr135 is important for regulating the protein stability of Msx2 by PKCs.
|
SIGNOR-278982
|
Q08334
|
Q9GZX6
| 2
|
binding
|
up-regulates
| 0.696
|
See table 2
|
SIGNOR-151880
|
P68400
|
P29590
| 1
|
phosphorylation
|
down-regulates
| 0.342
|
Here we show that ck2 regulates pml protein levels by promoting its ubiquitin-mediated degradation dependent on direct phosphorylation at ser517.
|
SIGNOR-148306
|
Q9Y2T1
|
Q9H2K2
| 0
|
ADP-ribosylation
|
down-regulates quantity by destabilization
| 0.697
|
Together, these findings are consistent with the hypothesis that TNKS promotes the ubiquitination and degradation of axin, which may be mediated, at least in part, through the direct PARsylation of axin.
|
SIGNOR-263380
|
Q9UBY8
|
Q01105
| 2
|
binding
|
down-regulates activity
| 0.2
|
CLN8 interacts with ceramide binding proteins PP2A and I2PP2A. We showed that the phosphorylation levels of several substrates of PP2A, namely Akt, S6 kinase, and GSK3β, were decreased in CLN8 disease patient fibroblasts. This reduction can be reversed by inhibiting PP2A phosphatase activity with cantharidin, suggesting a higher PP2A activity in CLN8-deficient cells. The phosphorylation levels of PP2A substrates are decreased in the absence of CLN8.
|
SIGNOR-265584
|
O75626
|
O75925
| 0
|
sumoylation
|
up-regulates
| 0.324
|
Blimp_1 is subjected to pias1_mediated sumoylation at lysine 816 / it appears that sumo_modified blimp_1 is a more potent transcriptional repressor.
|
SIGNOR-197265
|
P10451
|
P08254
| 0
|
cleavage
|
up-regulates activity
| 0.67
|
In this study, we found a novel motif, LRSKSRSFQVSDEQY, in the C-terminal fragment of MMP-3/7-cleaved mouse OPN binds to α9β1 integrin. Importantly, this novel motif is involved in the development of anti-type II collagen antibody-induced arthritis (CAIA). This study provides the first in vitro and in vivo evidence that OPN cleavage by MMP-3/7 is an important regulatory mechanism for CAIA.
|
SIGNOR-253320
|
O60674
|
O14543
| 2
|
binding
|
down-regulates activity
| 0.796
|
The ability of SOCS3 to simultaneously bind to JAK and to the cytokine receptor explains the specificity of the suppression. SOCS3 binds JAK and gp130 receptor simultaneously, using two opposing surfaces: while the phosphotyrosine-binding groove on the SOCS3 SH2 domain is occupied by the gp130 receptor, a subdomain in the SH2 domain of SOCS3 is also required for inhibition of JAK, binding in a phospho-independent manner to a non-canonical surface of JAK2 (58, 59). The KIR of SOCS3 occludes the substrate-binding groove on JAK2.
|
SIGNOR-255329
|
P13693
|
P53350
| 0
|
phosphorylation
|
down-regulates
| 0.716
|
Plk phosphorylates tctp on two serine residues. These results suggest that phosphorylation decreases the microtubule-stabilizing activity of tctp and promotes the increase in microtubule dynamics that occurs after metaphase
|
SIGNOR-91348
|
P12931
|
P63092
| 2
|
binding
|
up-regulates activity
| 0.507
|
Here we demonstrate that Galphas and Galphai, but neither Galphaq, Galpha12 nor Gbetay, directly stimulate the kinase activity of downregulated c-Src
|
SIGNOR-256527
|
Q96L34
|
Q13470
| 1
|
phosphorylation
|
down-regulates activity
| 0.2
|
We also discover a MARK-mediated phosphorylation on TNK1 at S502 that promotes an interaction between TNK1 and 14-3-3, which sequesters TNK1 and inhibits its kinase activity.Phosphorylation of TNK1 at S502 within the proline rich domain is required for TNK1 binding to 14-3-3.MARKs mediate phosphorylation at S502 and 14-3-3 binding to TNK1, which restrains the movement of TNK1 into heavy membrane-associated clusters.
|
SIGNOR-273865
|
Q08334
|
Q8IU54
| 2
|
binding
|
up-regulates
| 0.615
|
Il-28 and il-29 interacted with a heterodimeric class ii cytokine receptor that consisted of il-10 receptor beta (il-10rbeta) and an orphan class ii receptor chain, designated il-28ralpha.
|
SIGNOR-96177
|
Q13835
|
P31751
| 0
|
phosphorylation
|
up-regulates quantity by stabilization
| 0.267
|
Akt2 phosphorylates PKP1 in vitro. Phosphorylated PKP1 is more resistant to degradation. PKP1 phosphorylation sites identified by peptide microarray analyses and mass spectrometry.
|
SIGNOR-273494
|
P32298
|
P30411
| 1
|
phosphorylation
|
down-regulates activity
| 0.288
|
Expression of GRK4α drastically increased the basal level of32P incorporation into B2R. GRK4α elevated the basal phosphorylation of Ser339 and Ser346/Ser348. phosphorylation of specific residues was correlated with the initiation of receptor internalization and the regulation of its desensitization.
|
SIGNOR-251193
|
P35222
|
Q9H1B7
| 0
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.2
|
FOXF2 directly bound the promoter of E3 ligase interferon regulatory factor 2-binding protein-like (IRF2BPL) and induced its transcriptional expression. IRF2BPL in turn interacted with β-catenin, increasing its ubiquitination and degradation.
|
SIGNOR-267153
|
Q02750
|
Q13153
| 0
|
phosphorylation
|
up-regulates activity
| 0.582
|
We find that adhesion to fibronectin induces pak1-dependent phosphorylation of mek1 on s298 and that this phosphorylation is necessary for efficient activation of mek1 and subsequent mapk activation.
|
SIGNOR-236002
|
Q92667
|
O43255
| 0
|
polyubiquitination
|
down-regulates quantity by destabilization
| 0.507
|
Seven In-Absentia Homolog 2 (Siah2), an E3-ubiquitin ligase whose expression is induced in hypoxic conditions, formed a complex and degraded AKAP121.
|
SIGNOR-272641
|
Q9Y243
|
P56279
| 2
|
binding
|
up-regulates
| 0.503
|
Full-length tcl1 and its isoforms bind to akt / in in vitro kinase assays using gsk-3_ as a substrate, we found that the presence of any of the tcl1 family proteins (tcl1, mtcp1, or tcl1b) as gst fusion proteins significantly enhanced akt-induced gsk-3_ phosphorylation
|
SIGNOR-81434
|
Q13217
|
Q9NZJ5
| 2
|
binding
|
down-regulates activity
| 0.616
|
The protein p58IPK {also known asDnaJ3C [DnaJ heat-shock protein (hsp) 40 homologue, subfamily C, member 3]} is known to inhibit the eIF2 kinases PKR (dsRNA-dependent protein kinase/eIF2 kinase 2) and PERK
|
SIGNOR-246201
|
Q9H4B4
|
P15336
| 1
|
phosphorylation
|
up-regulates
| 0.2
|
Phosphorylation of thr-69 by mapk14 and mapk11, and at thr-71 by mapk1/erk2, mapk3/erk1, mapk11, mapk12 and mapk14 in response to external stimulus like insulin causes increased transcriptional activity.
|
SIGNOR-163274
|
P63092
|
P25021
| 2
|
binding
|
up-regulates activity
| 0.454
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ‚â• -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ‚â• -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ‚â• -1.0.
|
SIGNOR-256777
|
P25105
|
P19086
| 2
|
binding
|
up-regulates activity
| 0.2
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257329
|
Q16644
|
Q6JBY9
| 1
|
phosphorylation
|
down-regulates activity
| 0.482
|
Human CapZIP was phosphorylated at Ser-179 and Ser-244 by MAPKAP-K2 (mitogen-activated protein kinase-activated protein kinase 2) or MAPKAP-K3 in vitro. In the present paper we have identified CapZIP as a protein that is phosphorylated exceptionally rapidly by several SAPKs in vitro (Figure 4), and which is expressed in muscles and immune cells. Both MAPKAP-K2 and MAPKAP-K3 phosphorylated CapZIP at Ser-179 in vitro. An important clue to the function of CapZIP and its phosphorylation came from the finding that it binds to the actin-capping protein CapZ (Figure 7A), and that cellular stresses trigger the dissociation of these two proteins (Figure 7B).Such an effect is presumably lost when CapZIP is phosphorylated and dissociates from CapZ.
|
SIGNOR-263082
|
Q06413
|
Q9UQL6
| 2
|
binding
|
down-regulates
| 0.696
|
The histone deacetylase hdac-5, upon dephosphorylation and translocation to the nucleus, directly inactivates mef2, preventing myogenesis.
|
SIGNOR-84026
|
P35916
|
O43915
| 2
|
binding
|
up-regulates
| 0.2
|
Vegf-d is a ligand for both vegf receptors (vegfrs) vegfr-2 (flk1) and vegfr-3 (flt4) and can activate these receptors.
|
SIGNOR-55065
|
O43684
|
Q13315
| 0
|
phosphorylation
|
up-regulates activity
| 0.312
|
Taken together, we highlight the functional significance of the crosstalk between the kinetochore-oriented signal and double-strand break repair pathways via ATM phosphorylation of Bub3 on Ser135.
|
SIGNOR-277582
|
P23471
|
P35222
| 1
|
dephosphorylation
|
up-regulates activity
| 0.378
|
PTPRZ1 constitutively promotes the tyrosine dephosphorylation of \u03b2-catenin, and thus \u03b2-catenin participation in TCF-mediated transcription.
|
SIGNOR-277044
|
O60260
|
P55036
| 1
|
polyubiquitination
|
down-regulates quantity by destabilization
| 0.2
|
S5a/Rpn10 is a ubiquitin (Ub)-binding protein that is a subunit of the 26S proteasome but also exists free in the cytosol. It binds poly-Ub chains through its two Ub-interacting motifs (UIMs). We discovered that, unlike typical substrates of Ub ligases (E3s), S5a can be ubiquitinated by all E3s tested including multimeric and monomeric Ring finger E3s (MuRF1, Siah2, Parkin, APC, and SCF(betaTRCP1)), the U-box E3, CHIP, and HECT domain E3s (E6AP and Nedd4) when assayed with UbcH5 or related Ub-conjugating enzymes.The short half-life of S5a presumably is because of the presence of the UIM domain and reflects the ubiquitination of free S5a by many E3s.
|
SIGNOR-272749
|
Q05195
|
Q15418
| 0
|
phosphorylation
|
down-regulates
| 0.315
|
In this study, we showed that mad1 is a substrate of p90 ribosomal kinase (rsk) and p70 s6 kinase (s6k). Both rsk and s6k phosphorylate serine 145 of mad1 upon serum or insulin stimulation. Ser-145 phosphorylation of mad1 accelerates the ubiquitination and degradation of mad1 through the 26s proteasome pathway
|
SIGNOR-178586
|
Q00535
|
Q96SB3
| 1
|
phosphorylation
|
down-regulates quantity
| 0.396
|
CDK5 decreased the expression of both spinophilin (30%) and neurabin (64%).|This suggests that CDK5 phosphorylation of spinophilin at Ser17 is not responsible for the CDK5 dependent increase in the spinophilin and PP1 association.
|
SIGNOR-279453
|
P68400
|
Q16623
| 1
|
phosphorylation
|
up-regulates
| 0.366
|
In this report, we show that syntaxin-1a is phosphorylated in vitro by cki on thr21. Casein kinase ii (ckii) has been shown previously to phosphorylate syntaxin-1a in vitro and we have identified ser14 as the ckii phosphorylation site. the phosphorylation of syntaxin-1a by ckii enhances its capacity to associate with synaptotagmin [21]. Therefore, phosphorylation of ser14 by ckii suggests an important role for this residue in regulating the interaction between syntaxin-1a and synaptotagmin
|
SIGNOR-114840
|
Q96P20
|
Q15842
| 2
|
binding
|
down-regulates activity
| 0.2
|
We further show that Kir6.1 physically associates with NLRP3 and thus inhibits the interactions between the NLRP3 inflammasome subunits. Our results reveal a previously unrecognized function of Kir6.1 as a negative regulator of the NLRP3 inflammasome
|
SIGNOR-262034
|
P43403
|
P12931
| 0
|
phosphorylation
|
up-regulates activity
| 0.479
|
In the cluster, Zap70 will be rapidly phosphorylated by active Src and slowly phosphorylated by autoinhibited, inactive Src.|We provide evidence that clusters harbor a positive feedback loop among Zap70, LAT, and Src-family kinases that binds phosphorylated LAT and further activates Zap70.
|
SIGNOR-279126
|
O15492
|
P07948
| 0
|
phosphorylation
|
up-regulates activity
| 0.346
|
Lyn kinase phosphorylated recombinant RGS16 in vitro. Induction of RGS16 tyrosine phosphorylation was associated with increased RGS16 protein levels and enhanced GAP activity in cell membranes.
|
SIGNOR-251410
|
Q86VG3
|
P20290
| 2
|
binding
|
down-regulates activity
| 0.2
|
Furthermore, we co-immunoprecipitated HEPIS with BTF3, a component of the RNA pol II initiation complex, and observed reduced proliferation of HeLa cells transfected with the HEPIS gene.
|
SIGNOR-260252
|
O43521
|
P06493
| 0
|
phosphorylation
|
up-regulates activity
| 0.404
|
Furthermore, active recombinant Cdk1/cyclin B1 phosphorylates BimEL and BimL in vitro and Serine 44 on BimL has been identified as a Cdk1 phosphorylation site. Collectively, these results suggest that Cdk1/cyclin B1-dependent hyper-phosphorylation of Bim during prolonged mitotic arrest is an important cell death signal.
|
SIGNOR-267985
|
P98164
|
Q13635
| 2
|
binding
|
up-regulates quantity
| 0.493
|
LRP2 Promotes SHH Activity in Neurogenic Niches of the Developing and Adult Brain. In the RDVM, LRP2 forms a co-receptor complex with PTCH1 facilitating SHH binding and internalization of SHH/PTCH1 complexes, a prerequisite for pathway activation (Fig. 3B).
|
SIGNOR-265257
|
P53355
|
Q13526
| 1
|
phosphorylation
|
down-regulates activity
| 0.369
|
DAPK1 inhibits Pin1 nuclear localization and cellular function.|DAPK1 interacts with and phosphorylates Pin1 on Ser71 in vitro and in vivo.
|
SIGNOR-278160
|
P43403
|
Q9UJZ1
| 2
|
binding
|
up-regulates activity
| 0.2
|
In these studies, we also found that SLP-2 interacted with Lck, ZAP70, LAT, and PLC-gamma1 during the 30-min period following stimulation in vitro|The SLP-2-associated pool of these molecules became phosphorylated/activated in a sequential manner, a profile compatible with their temporal involvement in early TCR signalling.
|
SIGNOR-260377
|
Q9Y2R2
|
P06239
| 1
|
dephosphorylation
|
down-regulates activity
| 0.751
|
In vitro experiments with purified recombinant proteins demonstrated that PTPN22-D195A/C227S interacted directly with activated Lck, Zap70, and TCRzeta, confirming the initial substrate trap results. Native PTPN22 dephosphorylated Lck and Zap70 at their activating tyrosine residues Tyr-394 and Tyr-493, respectively, but not at the regulatory tyrosines Tyr-505 (Lck) or Tyr-319 (Zap70). Native PTPN22 also dephosphorylated TCRzeta in vitro and in cells, and its substrate trap variant co-immunoprecipitated with TCRzeta when both were coexpressed in 293T cells, establishing TCRzeta as a direct substrate of PTPN22.
|
SIGNOR-248836
|
Q05195
|
P31749
| 0
|
phosphorylation
|
down-regulates
| 0.363
|
Here, we present evidence that akt inhibits mad1-mediated transcription repression by physical interaction with and phosphorylation of mad1.
|
SIGNOR-252525
|
P28482
|
Q07666
| 1
|
phosphorylation
|
up-regulates
| 0.666
|
In support of this assumption, purified gst_sam68 protein was phosphorylated by recombinant erk2we found that sam68 mutated in ser 58, thr 71 and thr 84 showed the same extent of impairment in induced exon inclusion as did sam68 mutated in all s/tp sites
|
SIGNOR-96414
|
Q14493
|
P0C5Y9
| 1
|
translation regulation
|
up-regulates quantity by expression
| 0.2
|
Synthesis of mature histone mRNA requires only a single processing reaction: an endonucleolytic cleavage between a conserved stem-loop and a purine-rich downstream element to form the 3' end. The stem-loop binding protein (SLBP) is required for processing, and following processing, histone mRNA is transported to the cytoplasm, where SLBP participates in translation of the histone mRNA|We used radiolabeled probes generated by PCR targeting the open reading frame (ORF) to detect histones H2A, H2B, H3, H4, and H1 and used 7SK snRNA as a loading control (Fig. 2A). The abundance of histone H2A, H2B, H3, and H4 mRNAs is reduced to 37% to 70% of control levels in the SLBP knockdown cells when compared to the C2 control.
|
SIGNOR-265411
|
Q9UHW9
|
Q9BYP7
| 0
|
phosphorylation
|
down-regulates activity
| 0.444
|
WNK3, which inhibits the activity of KCC3, promoted phosphorylation of Ser-96 as well as Thr-991 and Thr-1048.
|
SIGNOR-260912
|
Q14CS0
|
P06493
| 0
|
phosphorylation
|
down-regulates activity
| 0.2
|
At mitosis, Cdc2 kinase phosphorylates p47 on Serine-140 and p37 on Serine-56 and Threonine-59, respectively. The phosphorylated p47 and p37 are unable to bind to Golgi membranes, resulting in mitotic inhibition of the p97/p47 and the p97/p37 pathways, respectively.
|
SIGNOR-265041
|
Q8WZ19
|
P61586
| 2
|
binding
|
down-regulates quantity
| 0.377
|
BACURDs form ubiquitin ligase complexes, which selectively ubiquitinate RhoA, with Cul3. Our studies reveal a previously unknown mechanism for controlling RhoA degradation and regulating RhoA function in various biological contexts, which involves a Cul3/BACURD ubiquitin ligase complex.
|
SIGNOR-264236
|
Q9BVN2
|
Q9Y6K9
| 1
| null |
up-regulates quantity by stabilization
| 0.308
|
NESCA interacts with the IKK complex by the N-terminal region of NEMO. This experiment revealed that the overexpression of NESCA completely abolished the TRAF6-mediated polyubiquitination of NEMO, as it appears by using either anti-HA (Fig. 5A) or anti-NEMO (Fig. 5B) antibodies on immunoprecipitated extracts.
|
SIGNOR-272775
|
Q15059
|
Q09472
| 2
|
binding
|
up-regulates activity
| 0.317
|
Brd3 interacts with both IRF3 and p300, increases p300-mediated acetylation of IRF3, and enhances the association of IRF3 with p300 upon virus infection.|Brd3 enhances p300-mediated acetylation of IRF3
|
SIGNOR-262044
|
P62826
|
Q9NRC8
| 0
|
deacetylation
|
down-regulates activity
| 0.2
|
N this study, we demonstrated that SIRT7 interacts with a small GTPase, Ras-related nuclear antigen (Ran), and deacetylates Ran at K37. |The nuclear export by CRM1 requires an interaction with the small GTPase Ras-related nuclear antigen (Ran), which cycles between GTP- and GDP-bound states. The binding of Ran GTP to CRM1 in the nucleus increases the affinity of CRM1 for cargo proteins [[18], [19], [20]]. Interestingly, Ran is a lysine-acetylated protein
|
SIGNOR-275849
|
P04637
|
P51812
| 0
|
phosphorylation
|
up-regulates activity
| 0.336
|
Here we show that ribosomal S6 kinase 2 (RSK2) activates and phosphorylates p53 (Ser15) in vitro and in vivo and colocalizes with p53 in the nucleus.
|
SIGNOR-279567
|
Q01196
|
O60216
| 0
|
transcriptional regulation
|
down-regulates quantity by repression
| 0.283
|
We observed that depletion of RAD21 (but not CTCF) enhanced RUNX1 transcription in human HL-60 myelocytic leukemia cells
|
SIGNOR-259973
|
P04626
|
P12931
| 0
|
phosphorylation
|
up-regulates activity
| 0.615
|
In addition, the c-Src inhibitor 4-(4\u2019-phenoxyanilino)-6,7-dimethoxyquinazoline prevented SP-induced activation of HER2.|On the other hand, c-Src directly phosphorylates the cytoplasmic tails of both EGFR and HER2, allowing the binding of scaffold proteins that will further activate signal transduction.
|
SIGNOR-279432
|
Q14344
|
Q8N1W1
| 2
|
binding
|
up-regulates activity
| 0.341
|
Taken together, the results suggest that active G13 and Gq form a complex with Rgnef and that G13 and Gq are upstream activators of Rgnef.
|
SIGNOR-278064
|
P52292
|
P0DTC6
| 2
|
binding
|
down-regulates activity
| 0.2
|
The results from Figure 1C suggest that ORF6 inhibits IFN-β production through IRF3 or a component downstream of IRF3. Thus, we examined the effect of ORF6 on IRF3 nuclear translocation. Upon poly(I:C) treatment, IRF3 translocated to the cell nucleus in the absence of ORF6, whereas the expression of ORF6 blocked its nuclear translocation (Figure 2D). Karyopherin α 1–6 (KPNA1–6) are importing factors for nuclear translocation of cargos, including IRF3, IRF7, and STAT1 (Chook and Blobel, 2001). Co-immunoprecipitation showed that ORF6 selectively interacted with KPNA2, but not the other KPNAs (Figure 2E), suggesting that ORF6 inhibits IFN-β production by binding to KPNA2 to block IRF3 nuclear translocation (Figure 2F).
|
SIGNOR-262513
|
P78357
|
Q12860
| 1
|
relocalization
|
up-regulates activity
| 0.625
|
These results suggest that the targeting of contactin to different axonal domains may be determined, in part, via its association with Caspr.
|
SIGNOR-269073
|
Q8NHV4
|
O14965
| 0
|
phosphorylation
|
up-regulates activity
| 0.557
|
Microtubule nucleation during central spindle assembly requires NEDD1 phosphorylation on serine 405 by Aurora A| In the absence of Aurora A, the HURP (also known as DLGAP5) and NEDD1 proteins that are involved in nucleation of microtubules fail to concentrate in the midzone.
|
SIGNOR-272965
|
P08069
|
P08069
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
Insulin and insulin-like growth factor (igf-i) receptors are heterotetrameric proteins consisting of two alpha-and two beta-subunits and members of the transmembrane tyrosine kinase receptors. Specific ligand binding to the receptor triggers a cascade of intracellular events, which begins with autophosphorylation of several tyrosine residues of the beta-subunit of the receptor.
|
SIGNOR-26582
|
P78352
|
O95886
| 2
|
binding
|
up-regulates activity
| 0.758
|
SAPAPs are specifically expressed in neuronal cells and enriched in the PSD fraction. SAPAPs induce the enrichment of PSD-95/SAP90 to the plasma membrane in transfected cells. Thus, SAPAPs may have a potential activity to maintain the structure of PSD by concentrating its components to the membrane area.
|
SIGNOR-264211
|
O00712
|
Q02535
| 1
|
transcriptional regulation
|
down-regulates quantity
| 0.25
|
By integrating transcriptomic profiling (RNA-seq) of Nfia- and Nfix-deficient GNPs with epigenomic profiling (ChIP-seq against NFIA, NFIB and NFIX, and DNase I hypersensitivity assays), we reveal that these transcription factors share a large set of potential transcriptional targets, suggestive of complementary roles for these NFI family members in promoting neural development
|
SIGNOR-268879
|
P28223
|
P08754
| 2
|
binding
|
up-regulates activity
| 0.268
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-256885
|
Q13043
|
Q9NS23
| 2
|
binding
|
up-regulates
| 0.806
|
Rassf1a and mst1 co-exist as a complex localizing at microtubules throughout the cell cycle, of which the rassf1a mst1 interaction is stimulatory to the mst1 kinase activity.
|
SIGNOR-197744
|
P05412
|
Q02930
| 2
|
binding
|
up-regulates activity
| 0.51
|
CRE-BPa specifically binds to CRE as a homodimer or heterodimer with c-Jun or CRE-BP1. In CAT cotransfection experiments using CV-1 cells, transient expression of each of four CRE-BPa proteins caused a 1.6- to 3.4-fold increase of CRE-dependent transcription
|
SIGNOR-219634
|
Q15910
|
Q12972
| 2
|
binding
|
up-regulates activity
| 0.36
|
Recruited NIPP1 enables the net phosphorylation of EZH2 by inhibiting its dephosphorylation by PP1.
|
SIGNOR-255665
|
P26358
|
P51608
| 2
|
binding
|
up-regulates activity
| 0.528
|
Thus, these results indicate that MeCP2-interacting Dnmt1 has significant maintenance DNA methyltransferase activity and that MeCP2 does not vanish Dnmt1 enzymatic activity.
|
SIGNOR-264541
|
P48436
|
P32243
| 2
|
binding
|
up-regulates activity
| 0.349
|
BEST1 promoter activity was increased by SOX9 overexpression and decreased by siRNA-mediated SOX9 knockdown. SOX9 physically interacted with MITF and OTX2 and orchestrated synergistic activation of the BEST1 promoter with the paired SOX site playing essential roles.
|
SIGNOR-255184
|
Q9UHD2
|
Q13501
| 1
|
phosphorylation
|
up-regulates
| 0.709
|
Tbk-1 coordinated assembly and function of the autophagic machinery and phosphorylated the autophagic adaptor p62 (sequestosome 1) on ser-403, a residue essential for its role in autophagic clearance.
|
SIGNOR-191944
|
P31751
|
P78563
| 1
|
phosphorylation
|
down-regulates activity
| 0.2
|
AKT-dependent phosphorylation of the adenosine deaminases ADAR-1 and -2 inhibits deaminase activity. Coimmunoprecipitation studies and in vitro kinase assays revealed that AKT-1, -2, and -3 interact with both ADAR1p110 and ADAR2 and phosphorylate these RNA editases. Using site-directed mutagenesis of suspected AKT phosphorylation sites, AKT was found to primarily phosphorylate ADAR1p110 and ADAR2 on T738 and T553, respectively
|
SIGNOR-276196
|
P61278
|
P31391
| 2
|
binding
|
up-regulates
| 0.777
|
The five receptor subtypes bind the natural SST peptides, SST-14 and SST-28, with low nanomolar affinity.
|
SIGNOR-82496
|
P46527
|
Q9H2X6
| 0
|
phosphorylation
|
up-regulates
| 0.254
|
Homeodomain-interacting protein kinase-2 stabilizes p27(kip1) by its phosphorylation at serine 10 and contributes to cell motility
|
SIGNOR-174617
|
P62258
|
P46527
| 2
|
binding
|
down-regulates
| 0.54
|
14-3-3_, 14-3-3_, and 14-3-3_ (but not 14-3-3_ and 14-3-3_) could form a complex with p27kip1 / we discovered that akt-mediated p27kip1phosphorylation directly induces p27kip1binding to 14-3-3 and cytoplasmic localization through phosphorylating the newly identified thr198residue.
|
SIGNOR-88297
|
P42701
|
Q9NPF7
| 2
|
binding
|
up-regulates
| 0.645
|
Like il-12, il-23 binds to the il-12r subunit il-12rbeta1.
|
SIGNOR-87739
|
Q16539
|
P23769
| 1
|
phosphorylation
|
up-regulates
| 0.269
|
P38_ increases gata_2 activity at endogenous target genes by inducing gata_2 multi_site phosphorylation.
|
SIGNOR-205242
|
Q01484
|
Q92823
| 0
|
relocalization
|
up-regulates quantity
| 0.737
|
Neurofascin, L1, NrCAM, NgCAM, and neuroglian are membrane-spanning cell adhesion molecules with conserved cytoplasmic domains that are believed to play important roles in development of the nervous system. This report presents biochemical evidence that the cytoplasmic domains of these molecules associate directly with ankyrins, a family of spectrin-binding proteins located on the cytoplasmic surface of specialized plasma membrane domains.
|
SIGNOR-266719
|
Q9GZV5
|
O14640
| 2
|
binding
|
down-regulates
| 0.358
|
Taz binds to dvl proteins, thereby inhibiting dvl phosphorylation by casein kinase 1-delta and -epsilon kinases (ck1d/e), thus promoting beta-catenin degradation.
|
SIGNOR-195212
|
P24941
|
Q8IZL8
| 1
|
phosphorylation
|
up-regulates
| 0.367
|
We identified ser(477) and ser(991) of pelp1 as cdk phosphorylation sites. we conclude that pelp1 is a novel substrate of interphase cdks and that its phosphorylation is important for the proper function of pelp1 in modulating hormone-driven cell cycle progression and also for optimal e2f transactivation function.
|
SIGNOR-167766
|
P43657
|
Q5JWF2
| 2
|
binding
|
up-regulates activity
| 0.323
|
LPAR1 is reported to associate with Gia,G12/13a,orGqa; LPAR3 with Gia or Gqa; and LPAR6 withGia,G12/13a,orGsa.
|
SIGNOR-278872
|
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