| # Raw MS/MS Data Directory |
|
|
| This directory stores raw spectral files and database search outputs. |
| These files are **not tracked by git** (too large for GitHub — mzML files are 500 MB–1 GB each). |
|
|
| ## Download the data |
|
|
| All raw data files are available on Google Drive: |
| **https://drive.google.com/drive/folders/10_67wgMzvbi0jUoLoW7VTXNL3q63BWtL** |
| |
| Download and place the following files in this directory: |
| |
| | File | Description | |
| |------|-------------| |
| | `Ecoli_EV_1.mzML` | E. coli EV Orbitrap spectra (replicate 1) | |
| | `Ecoli_EV_2.mzML` | E. coli EV Orbitrap spectra (replicate 2) | |
| | `Database search output_Ecoli_EV_1.xlsx` | Ground-truth PSM labels (replicate 1) | |
| | `Database search output_Ecoli_EV_2.xlsx` | Ground-truth PSM labels (replicate 2) | |
| | `wastewater_Sample1_1.mzML` | Wastewater sample 1, replicate 1 | |
| | `wastewater_Sample1_2.mzML` | Wastewater sample 1, replicate 2 | |
| | `wastewater_Sample2_1.mzML` | Wastewater sample 2, replicate 1 | |
| | `wastewater_Sample2_2.mzML` | Wastewater sample 2, replicate 2 | |
| |
