author int64 658 755k | date stringdate 2012-06-12 08:34:29 2024-07-22 14:51:21 | timezone int64 -46,800 43.2k | hash stringlengths 40 40 | message stringlengths 5 490 | mods listlengths 1 16 | language stringclasses 20
values | license stringclasses 3
values | repo stringlengths 5 68 | original_message stringlengths 12 491 |
|---|---|---|---|---|---|---|---|---|---|
49,738 | 01.04.2020 19:18:42 | -7,200 | 809c02580570e136e2d150400abf184cbff01a74 | [MINOR] Fix typo internal builtin function names (sigmoid) | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/common/Builtins.java",
"new_path": "src/main/java/org/apache/sysds/common/Builtins.java",
"diff": "@@ -154,7 +154,7 @@ public enum Builtins {\nSAMPLE(\"sample\", false),\nSD(\"sd\", false),\nSEQ(\"seq\", false),\n- SIGMOD(\"sigmo... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix typo internal builtin function names (sigmoid) |
49,738 | 09.04.2020 19:25:37 | -7,200 | 395b5d08b75ac0cd71421ac83f7792ff02e2086a | [MINOR] Fix unnecessarily detailed test output in tests/functions/misc | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/misc/ConditionalValidateTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/misc/ConditionalValidateTest.java",
"diff": "@@ -132,8 +132,7 @@ public class ConditionalValidateTest extends Automated... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix unnecessarily detailed test output in tests/functions/misc |
49,741 | 09.04.2020 19:29:55 | -7,200 | 39c56541ca83ea36093384220d19a31b5578537e | [MINOR] Extended JMLC API (handling of pinned variables)
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/jmlc/PreparedScript.java",
"new_path": "src/main/java/org/apache/sysds/api/jmlc/PreparedScript.java",
"diff": "@@ -72,7 +72,7 @@ public class PreparedScript implements ConfigurableAPI\n//input/output specification\nprivate fi... | Java | Apache License 2.0 | apache/systemds | [MINOR] Extended JMLC API (handling of pinned variables)
Closes #835. |
49,714 | 09.04.2020 19:55:39 | -7,200 | a3c0cce761c855b034302e1f0871d68d8eccd089 | Fix named arguments in MNIST LeNet example script
This fix backports the fix from into the merged SystemDS code line.
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/nn/examples/mnist_lenet.dml",
"new_path": "scripts/nn/examples/mnist_lenet.dml",
"diff": "@@ -118,13 +118,13 @@ train = function(matrix[double] X, matrix[double] Y,\nstride, stride, pad, pad)\noutr1 = relu::forward(outc1)\n[outp1, Houtp1, Woutp1] = max... | Java | Apache License 2.0 | apache/systemds | [SYSTEMML-2533] Fix named arguments in MNIST LeNet example script
This fix backports the fix from #866 into the merged SystemDS code line.
Closes #867. |
49,706 | 10.04.2020 17:16:53 | -7,200 | 4e0edec2d19fb28b59b830ac5dee479c8596041f | [MINOR] Remove Travis Testing
The travis testing is removed since our testing is now executed
using Github Actions
The travis testing was only covering the component tests.
Closes | [
{
"change_type": "DELETE",
"old_path": ".travis.yml",
"new_path": null,
"diff": "-#\n-# Licensed to the Apache Software Foundation (ASF) under one or more\n-# contributor license agreements. See the NOTICE file distributed with\n-# this work for additional information regarding copyright ownership.\... | Java | Apache License 2.0 | apache/systemds | [MINOR] Remove Travis Testing
The travis testing is removed since our testing is now executed
using Github Actions
The travis testing was only covering the component tests.
Closes #884. |
49,738 | 10.04.2020 18:39:39 | -7,200 | 3fd87695591bdba30964db995066472d148b252e | [MINOR] Fix opcodes for lineage-based reuse (corrupted by rework) | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheConfig.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheConfig.java",
"diff": "@@ -30,7 +30,7 @@ import java.util.ArrayList;\npublic class LineageCacheConfig {\nprivate st... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix opcodes for lineage-based reuse (corrupted by rework) |
49,738 | 11.04.2020 23:12:37 | -7,200 | 84ef71326c6781bad4ed9b39a210ee2cd4a6d4bd | Fix libsvm reader/writer integration and correctness
This patch fixes a correctness issue of the libsvm local writers, which
incorrectly shifted the output indexes twice for space inputs.
Furthermore, the libsvm local readers were not fully integrated in all
code path yet.
The distributed libsvm readers/writers still remain to be integrated. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/io/MatrixReaderFactory.java",
"new_path": "src/main/java/org/apache/sysds/runtime/io/MatrixReaderFactory.java",
"diff": "@@ -28,32 +28,30 @@ import org.apache.sysds.runtime.matrix.data.MatrixBlock;\npublic class MatrixRea... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-52] Fix libsvm reader/writer integration and correctness
This patch fixes a correctness issue of the libsvm local writers, which
incorrectly shifted the output indexes twice for space inputs.
Furthermore, the libsvm local readers were not fully integrated in all
code path yet.
The distributed libsvm readers/writers still remain to be integrated. |
49,708 | 12.04.2020 20:43:47 | -7,200 | 0dae42705f91b00abc03be09d810b3a9286338c5 | Initial design ONNX graph importer
Since ONNX does support conditional operators (loop, if), I've tailored
the design towards a command-line tool that generates a DML script as
discussed.
AMLS project SS2020.
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/Tasks.txt",
"new_path": "docs/Tasks.txt",
"diff": "@@ -205,6 +205,7 @@ SYSTEMDS-250 Extended Slice Finding\nSYSTEMDS-260 Misc Tools\n* 261 Stable marriage algorithm OK\n* 262 Data augmentation tool for data cleaning OK\n+ * 263 ONNX graph importer/exporte... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-263] Initial design ONNX graph importer
Since ONNX does support conditional operators (loop, if), I've tailored
the design towards a command-line tool that generates a DML script as
discussed.
AMLS project SS2020.
Closes #885. |
49,738 | 13.04.2020 18:39:47 | -7,200 | 5f1cdf367b0616359461f1fd198898d59f0598a4 | Extended eval lazy function compilation (nested builtins)
This patch extends the lazy function compilation of dml-bodied builtin
functions called through eval. We now support nested dml-bodied function
calls (e.g., eval -> lm -> lmDS/lmCG) which is crucial for generic
primitives of hyper-parameter optimization and the enumeration of
cleaning pipelines. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/parser/DMLProgram.java",
"new_path": "src/main/java/org/apache/sysds/parser/DMLProgram.java",
"diff": "@@ -131,6 +131,10 @@ public class DMLProgram\nreturn ret;\n}\n+ public boolean containsFunctionStatementBlock(String name) {\n... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-291] Extended eval lazy function compilation (nested builtins)
This patch extends the lazy function compilation of dml-bodied builtin
functions called through eval. We now support nested dml-bodied function
calls (e.g., eval -> lm -> lmDS/lmCG) which is crucial for generic
primitives of hyper-parameter optimization and the enumeration of
cleaning pipelines. |
49,706 | 13.04.2020 18:44:24 | -7,200 | 4bbba4051e63e67a3a2366ee3f414f01cc7d0b93 | Travis remove badge
Missed that the badge still was in the README.
This is now removed, furthermore the task associated with travis have
been modified to reflect that it is removed, and why.
Closes | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -27,9 +27,7 @@ limitations under the License.\n## Status\n-[](https://travis-ci.org/apache/systemml)\n[![License](https://img.shields.io/ba... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-15] Travis remove badge
Missed that the badge still was in the README.
This is now removed, furthermore the task associated with travis have
been modified to reflect that it is removed, and why.
Closes #886. |
49,738 | 21.04.2020 21:43:08 | -7,200 | 0426099b80fb451239e7d9a39bdacf752c79c80e | [MINOR] Removal of remaining pydml test files and tests | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/mlcontext/MLContextTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/mlcontext/MLContextTest.java",
"diff": "@@ -1063,22 +1063,6 @@ public class MLContextTest extends MLContextTestBase {\nml.ex... | Java | Apache License 2.0 | apache/systemds | [MINOR] Removal of remaining pydml test files and tests |
49,746 | 22.04.2020 20:21:33 | -19,080 | dbe00f140a63329e26f269890828679cd81f2a97 | [MINOR][BUILD] Package python dist. with mvn `-P` flag
Maven build
- Maven packaging with new `-P distribution` option
- New pypi release instructions and pre_setup.py
Testing
- Run all tests with single command in workflow
Doc
- Updates the setup.py, to read `README.md` to remove
redundancy
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -57,7 +57,7 @@ jobs:\n${{ runner.os }}-maven-\n- name: Maven clean & package\n- run: mvn clean package\n+ run: mvn clean package -P distribution\n- name: Setup Python\nuses:... | Java | Apache License 2.0 | apache/systemds | [MINOR][BUILD] Package python dist. with mvn `-P` flag
Maven build
- Maven packaging with new `-P distribution` option
- New pypi release instructions and pre_setup.py
Testing
- Run all tests with single command in workflow
Doc
- Updates the setup.py, to read `README.md` to remove
redundancy
Closes #873. |
49,689 | 23.04.2020 22:12:25 | -7,200 | 12f69c7c111cbe5e0ccc35d8bac58674b06480af | [SYSTEMDS-333,337] Improved lineage cache eviction
This patch improves lineage cache eviction by taking into account actual
execution time of instructions/functions. The ordering policy is still
LRU. Future commits will bring better approach to estimate spilling time
and new eviction policies.
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/Tasks.txt",
"new_path": "docs/Tasks.txt",
"diff": "@@ -244,7 +244,11 @@ SYSTEMDS-320 Merge SystemDS into Apache SystemML OK\nSYSTEMDS-330 Lineage Tracing, Reuse and Integration\n* 331 Cache and reuse scalar outputs (instruction and multi-level) OK\n* 332 ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-333,337] Improved lineage cache eviction
This patch improves lineage cache eviction by taking into account actual
execution time of instructions/functions. The ordering policy is still
LRU. Future commits will bring better approach to estimate spilling time
and new eviction policies.
Closes #891. |
49,738 | 25.04.2020 19:40:58 | -7,200 | f450ead5506d1615b5979bee85b39891e0f0fc00 | [MINOR] Script-level improvements mice builtin function
* Loop vectorization of scalar assignment
* Removed unnecessary branch for table padding
* Minor modifications of rmEmpty use to increase common subexpression
elimination | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/mice.dml",
"new_path": "scripts/builtin/mice.dml",
"diff": "@@ -56,8 +56,8 @@ return(Frame[String] dataset, Frame[String] singleSet)\ncol = ncol(F)\nResult = matrix(0, rows=1, cols = col)\nMask_Result = matrix(0, rows=1, cols=col)\n- cat = t(cM... | Java | Apache License 2.0 | apache/systemds | [MINOR] Script-level improvements mice builtin function
* Loop vectorization of scalar assignment
* Removed unnecessary branch for table padding
* Minor modifications of rmEmpty use to increase common subexpression
elimination |
49,698 | 27.04.2020 00:01:26 | -19,080 | 23328d8c0c621a9fd21f94929c5d56ab13dd2c25 | [MINOR] Fix Javadoc issue at `getLineageTrace`
* The parameter `var` is the output variable name for which the
lineage trace is sought.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/jmlc/PreparedScript.java",
"new_path": "src/main/java/org/apache/sysds/api/jmlc/PreparedScript.java",
"diff": "@@ -477,7 +477,10 @@ public class PreparedScript implements ConfigurableAPI\n/**\n* Capture lineage of the DML/PyD... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix Javadoc issue at `getLineageTrace`
* The parameter `var` is the output variable name for which the
lineage trace is sought.
Closes #899. |
49,698 | 27.04.2020 00:02:26 | -19,080 | d36ec4c5b7ef12e3129945f653d69f016788ad1f | [MINOR][DOC] Update 'SystemDS' to 'Apache SystemDS'
* This is as per the discussion at
* Also, wrap long lines and update mvn build command.
Closes | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -17,9 +17,16 @@ limitations under the License.\n{% end comment %}\n-->\n-# SystemDS\n+# Apache SystemDS\n-**Overview:** SystemDS is a versatile system for the end-to-end data science lifecycle from data integrat... | Java | Apache License 2.0 | apache/systemds | [MINOR][DOC] Update 'SystemDS' to 'Apache SystemDS'
* This is as per the discussion at
https://www.mail-archive.com/dev@systemml.apache.org/msg01051.html
* Also, wrap long lines and update mvn build command.
Closes #898. |
49,698 | 28.04.2020 00:15:58 | -7,200 | bdf78e462506ef8ef7fc9e6b23a6520e4155eca0 | AutoEncoder test for codegenalg suite
This patch adds a test case for AutoEncoder with codegen
enabled against a corresponding R script.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/codegenalg/partone/AlgorithmAutoEncoder.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/codegenalg/partone/AlgorithmAutoEncoder.java",
"diff": "package org.apache.sysds.test.functions.codegenalg.p... | Java | Apache License 2.0 | apache/systemds | [SYSTEMML-2121] AutoEncoder test for codegenalg suite
This patch adds a test case for AutoEncoder with codegen
enabled against a corresponding R script.
Closes #890. |
49,706 | 29.04.2020 23:24:10 | -7,200 | 937749621bf4d79238f52b0baae4d3308a9318fd | [MINOR] Fix readme badges with links to master branch
Fix badges to only reflect status on push to master branch
Make badges link to the tests conducted.
Closes | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -40,10 +40,10 @@ programs over matrices, while replacing the underlying data model and compiler,\nsupported functionalities. Until the first release, you can build your own snapshot via Apache Maven:\n`mvn clean... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix readme badges with links to master branch
- Fix badges to only reflect status on push to master branch
- Make badges link to the tests conducted.
Closes #903. |
49,739 | 29.04.2020 23:48:33 | -7,200 | a7f17b3d17176ea8339cb5b5bcdd3c5854763761 | Fix Python lm/rand tests (tolerance, workflow)
Just a few changes to the lm test case (increasing tolerance) so that the
tc doesn't fail randomly. Remove multiple definitions of run in python
workflow file.
AMLS project SS 2020, part 2.
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -74,9 +74,7 @@ jobs:\n${{ runner.os }}-pip-${{ matrix.python-version }}-\n- name: Install pip Dependencies\n- run: pip install numpy py4j wheel\n- run: pip install scipy\n- ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-316] Fix Python lm/rand tests (tolerance, workflow)
Just a few changes to the lm test case (increasing tolerance) so that the
tc doesn't fail randomly. Remove multiple definitions of run in python
workflow file.
AMLS project SS 2020, part 2.
Closes #902. |
49,689 | 01.05.2020 15:20:37 | -7,200 | cf62a867846f6551ccbc9276124a7b679822fe77 | Add test for multiLogReg with reuse | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/lineage/LineageReuseAlg.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/lineage/LineageReuseAlg.java",
"diff": "@@ -39,7 +39,7 @@ public class LineageReuseAlg extends AutomatedTestBase {\nprotecte... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-338] Add test for multiLogReg with reuse |
49,720 | 02.05.2020 23:32:47 | -7,200 | 1a7f5ca662597a524a052e97b5a4e6fe340938ec | New built-in function imputeByFD (MVI by robust FDs)
Missing value imputation via robust functional dependencies
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/Tasks.txt",
"new_path": "docs/Tasks.txt",
"diff": "@@ -292,7 +292,8 @@ SYSTEMDS-380 Memory Footprint\n* 371 Matrix Block Memory footprint update\nSYSTEMDS-390 New Builtin Functions IV\n- * 391 New GLM builtin-in function (from algorithms) OK\n+ * 391 New ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-392] New built-in function imputeByFD (MVI by robust FDs)
Missing value imputation via robust functional dependencies
Closes #887. |
49,720 | 03.05.2020 14:50:43 | -7,200 | 8fbcd758674a07fa0a0f41be2ecea110b53691cc | [MINOR] Various improvements of data cleaning built-in primitives
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/mice.dml",
"new_path": "scripts/builtin/mice.dml",
"diff": "# NAME TYPE DEFAULT MEANING\n# ---------------------------------------------------------------------------------------------\n# F String --- Data Frame\n+# cMask Double --- A 0/1 row v... | Java | Apache License 2.0 | apache/systemds | [MINOR] Various improvements of data cleaning built-in primitives
Closes #901. |
49,738 | 09.05.2020 21:49:01 | -7,200 | 5e726cfe3122336becde8c84800180dd211d935a | Fix file format handling, docs, and github test config
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/documentation.yml",
"new_path": ".github/workflows/documentation.yml",
"diff": "name: Documentation\n-on:\n- push:\n- branches:\n- - master\n+on: [push, pull_request]\njobs:\ndocumentation1:\n"
},
{
"change_type": "MODIFY",
"old_p... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-55] Fix file format handling, docs, and github test config
Closes #907. |
49,738 | 12.05.2020 22:26:14 | -7,200 | 96a719bc384f0c60dc1994be49d72d91d2031dea | Fix lineage merge on parfor w/ conditional control flow
This patch makes a minor robustness fix to the parfor lineage merge for
the case that certain workers did not make any updates of result
variables due to conditional control flow in the parfor body. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ParForProgramBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ParForProgramBlock.java",
"diff": "@@ -1351,6 +1351,7 @@ public class ParForProgramBlock extends ForProgramBlock\... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-238] Fix lineage merge on parfor w/ conditional control flow
This patch makes a minor robustness fix to the parfor lineage merge for
the case that certain workers did not make any updates of result
variables due to conditional control flow in the parfor body. |
49,706 | 15.05.2020 22:49:56 | -7,200 | 99a7271a12a8d30e9f604cb46db5c6c6ee20d241 | [MINOR] Fix missing licenses and build rat check
ignore __pycache__ folders for rat
add license missing in compression tests
add license missing in scripts - __init__.py files
rat check for build workflow
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/build.yml",
"new_path": ".github/workflows/build.yml",
"diff": "@@ -48,4 +48,4 @@ jobs:\n${{ runner.os }}-maven-\n- name: Build\n- run: mvn package\n+ run: mvn package -P rat\n"
},
{
"change_type": "MODIFY",
"old_path": "pom.xml",... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix missing licenses and build rat check
ignore __pycache__ folders for rat
add license missing in compression tests
add license missing in scripts - __init__.py files
rat check for build workflow
Closes #912. |
49,706 | 15.05.2020 22:53:58 | -7,200 | 9bc52328f5535492d50cca811a67bd81829220ce | [MINOR] Cache Python pip and apt dependencies
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -53,8 +53,18 @@ jobs:\nwith:\npath: ~/.m2/repository\nkey: ${{ runner.os }}-maven-${{ hashFiles('**/pom.xml') }}\n- restore-keys: |\n- ${{ runner.os }}-maven-\n+\n+ - name: ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Cache Python pip and apt dependencies
Closes #913. |
49,689 | 21.05.2020 00:51:03 | -7,200 | 0dc1d16694a9fd7b56583b53566eab724d74a4db | [SYSTEMDS-74]Fix partial rewrites with new lineageitem constructors. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageRewriteReuse.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageRewriteReuse.java",
"diff": "@@ -650,7 +650,7 @@ public class LineageRewriteReuse\n//for (LineageItem input : source.ge... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-74]Fix partial rewrites with new lineageitem constructors. |
49,706 | 23.05.2020 22:40:54 | -7,200 | b7424431f3f6131e3245c03ba8d40aa81d2cb245 | [MINOR] Update Dockerfile (fixes, new R dependency)
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/action/Dockerfile",
"new_path": ".github/action/Dockerfile",
"diff": "#\n#-------------------------------------------------------------\n-FROM sebaba/testingsysds:0.2\n+FROM sebaba/testingsysds:2.0\n"
},
{
"change_type": "MODIFY",
"old_path... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update Dockerfile (fixes, new R dependency)
Closes #918. |
49,759 | 23.05.2020 22:57:17 | -7,200 | 86fd7b3d4aae5dbca8090e2638e0abc4da696655 | New builtin function toOneHot (one hot encoding)
Adds a builtin function toOneHot which transforms a vector containing
integers into a one-hot-encoded matrix (note transform works over frames
and reassigns the integer codes)
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/Tasks.txt",
"new_path": "docs/Tasks.txt",
"diff": "@@ -302,6 +302,7 @@ SYSTEMDS-390 New Builtin Functions IV\n* 391 New GLM builtin function (from algorithms) OK\n* 392 Builtin function for missing value imputation via FDs OK\n* 393 Builtin to find Connec... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-394] New builtin function toOneHot (one hot encoding)
Adds a builtin function toOneHot which transforms a vector containing
integers into a one-hot-encoded matrix (note transform works over frames
and reassigns the integer codes)
Closes #916. |
49,730 | 23.05.2020 23:24:30 | -7,200 | e78962b8db5b1c90fdb37ae6d9c6284f744cdbfc | Fixes distributed slice finding implementation
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/Tasks.txt",
"new_path": "docs/Tasks.txt",
"diff": "@@ -209,6 +209,7 @@ SYSTEMDS-250 Extended Slice Finding\n* 251 Alternative slice enumeration approach OK\n* 252 Initial data slicing implementation Python OK\n* 253 Distributed slicing algorithms (task/da... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-254] Fixes distributed slice finding implementation
Closes #908. |
49,738 | 24.05.2020 17:19:39 | -7,200 | c61e7ac71a83df3d525b6131ca76cf8252c6802f | [MINOR] Integration of steplm builtin (avoid excessive test output) | [
{
"change_type": "MODIFY",
"old_path": "scripts/algorithms/StepLinearRegDS.dml",
"new_path": "scripts/algorithms/StepLinearRegDS.dml",
"diff": "@@ -79,331 +79,15 @@ fileX = $X;\nfileY = $Y;\nfileB = $B;\nfileS = $S;\n-\nwrite_beta = ifdef($write_beta, TRUE);\n-\n-# currently only the forward selecti... | Java | Apache License 2.0 | apache/systemds | [MINOR] Integration of steplm builtin (avoid excessive test output) |
49,738 | 25.05.2020 21:11:52 | -7,200 | b66a3c006ce6a3a888653e2d1accec479cc756fd | Fix convergence condition of connected components builtin | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/components.dml",
"new_path": "scripts/builtin/components.dml",
"diff": "@@ -40,7 +40,7 @@ m_components = function(Matrix[Double] G, Integer maxi = 0, Boolean verbose = TR\niter = 1;\n# iterative computation of connected components\n- while( dif... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-393] Fix convergence condition of connected components builtin |
49,698 | 27.05.2020 06:51:21 | -19,080 | 36f1e51b270fee8fa2a8afc55713ca6202982116 | [MINOR] Move refactor `dev` docs to `dev` folder
* This change provide structure separate internal dev doc from
user facing docs
Closes | [
{
"change_type": "MODIFY",
"old_path": "CONTRIBUTING.md",
"new_path": "CONTRIBUTING.md",
"diff": "@@ -29,7 +29,7 @@ ___\nBefore contributing a pull request, we highly suggest applying a code formatter to the written code.\n-We have provided at profile for java located in [Codestyle File ./docs/CodeS... | Java | Apache License 2.0 | apache/systemds | [MINOR] Move refactor `dev` docs to `dev` folder
* This change provide structure separate internal dev doc from
user facing docs
Closes #920. |
49,698 | 30.05.2020 00:05:57 | -19,080 | 0e76598f47c94607bcf36b57f3bd4f1fd1cfc4d5 | [MINOR][DOC] Both the parameters should be named for rand()
* correct syntax: rand(rows = .., cols = ..)
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -149,7 +149,7 @@ The *icpt-argument* can be set to 3 modes:\n### Example\n```r\nX = rand (rows = 50, cols = 10)\n-y = X %*% rand(rows=ncol(X), 1)\n+y = X %*% rand(rows =... | Java | Apache License 2.0 | apache/systemds | [MINOR][DOC] Both the parameters should be named for rand()
* correct syntax: rand(rows = .., cols = ..)
Closes #926. |
49,738 | 30.05.2020 00:39:07 | -7,200 | 405462e84ad1192e447bb09c03fe20d112bf6afb | [MINOR] Fix invalid consistency checks of spark append_aligned rbind | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/spark/BinarySPInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/spark/BinarySPInstruction.java",
"diff": "@@ -459,7 +459,7 @@ public abstract class BinarySPInstruction extend... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix invalid consistency checks of spark append_aligned rbind |
49,683 | 01.06.2020 08:17:14 | -19,080 | 8d020fb9f807750b07d08398caa2d433305819b6 | [DOC] Add documentation for builtin sigmoid func.
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -27,9 +27,11 @@ limitations under the License.\n* [`lmDS`-Function](#lmds-function)\n* [`lmCG`-Function](#lmcg-function)\n* [`lmpredict`-Function](#lmpredict-function)\n... | Java | Apache License 2.0 | apache/systemds | [DOC] Add documentation for builtin sigmoid func.
Closes #929. |
49,689 | 01.06.2020 23:15:54 | -7,200 | 7bf3517b11ad4fc303b97e952a2acbc6002909c5 | [SYSTEMDS-411]Fix missing cache size update. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheEviction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheEviction.java",
"diff": "@@ -137,6 +137,8 @@ public class LineageCacheEviction\nh.setCacheStatus(LineageCacheStat... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-411]Fix missing cache size update. |
49,683 | 02.06.2020 10:15:24 | -19,080 | 9cbfa02196ff035f37f5a65bca0d7af085157c7e | [DOC] Documentation for builtin scale function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -27,6 +27,7 @@ limitations under the License.\n* [`lmDS`-Function](#lmds-function)\n* [`lmCG`-Function](#lmcg-function)\n* [`lmpredict`-Function](#lmpredict-function)\n+... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin scale function
Closes #934. |
49,726 | 02.06.2020 12:17:09 | -19,080 | 719ebe0d215035c054c435a5b7d790e643ec0fe1 | [DOC] Documentation for builtin normalize function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -31,6 +31,8 @@ limitations under the License.\n* [`sigmoid`-Function](#sigmoid-function)\n* [`steplm`-Function](#steplm-function)\n* [`slicefinder`-Function](#slicefinde... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin normalize function
Closes #935. |
49,706 | 03.06.2020 18:57:30 | -7,200 | d8c9495ae6d8e0507d113718b23dfd8fa5035e6d | [MINOR] Fix BuiltinFunctionExpression
Closes
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/parser/BuiltinFunctionExpression.java",
"new_path": "src/main/java/org/apache/sysds/parser/BuiltinFunctionExpression.java",
"diff": "@@ -912,6 +912,14 @@ public class BuiltinFunctionExpression extends DataIdentifier\ncase NROW:\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix BuiltinFunctionExpression
Closes #937.
Closes #944. |
49,733 | 04.06.2020 09:40:49 | -19,080 | 1c2ec03b48734e3f79d2ea9a35aa3d2891f15b27 | [DOC][1/2] Documentation for builtin KMeans function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -23,6 +23,7 @@ limitations under the License.\n* [Built-In Construction Functions](#built-in-construction-functions)\n* [`tensor`-Function](#tensor-function)\n* [DML-Bod... | Java | Apache License 2.0 | apache/systemds | [DOC][1/2] Documentation for builtin KMeans function
Closes #933. |
49,683 | 04.06.2020 11:06:47 | -19,080 | 859ad3a72906c67b7300c9980251da4cde9ed8f8 | [DOC] Documentation for builtin toOneHot function
Example description:
Number of classes (numClasses): 5
Input Matrix (X):
2.000 3.000 2.000
2.000 3.000 2.000
3.000 4.000 2.000
Result from toOneHot(X, numClasses):
0.000 1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000 0.000
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -33,7 +33,7 @@ limitations under the License.\n* [`steplm`-Function](#steplm-function)\n* [`slicefinder`-Function](#slicefinder-function)\n* [`normalize`-Function](#norm... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin toOneHot function
Example description:
Number of classes (numClasses): 5
Input Matrix (X):
2.000 3.000 2.000
2.000 3.000 2.000
3.000 4.000 2.000
Result from toOneHot(X, numClasses):
0.000 1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000 0.000
Closes #939. |
49,715 | 05.06.2020 17:36:46 | -19,080 | 9939f8c729df9479adde14fd9457723daf295d4e | [DOC] Documentation for builtin msvm function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -34,6 +34,7 @@ limitations under the License.\n* [`slicefinder`-Function](#slicefinder-function)\n* [`normalize`-Function](#normalize-function)\n* [`gnmf`-Function](#gnm... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin msvm function
Closes #936. |
49,738 | 05.06.2020 17:45:36 | -7,200 | 9d5999dc91df37beaddbdd48fe3c7487188f52a7 | [MINOR] Fix reading dml scripts from dist fs / object store | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"new_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"diff": "@@ -112,8 +112,6 @@ public class DMLScript\npublic static String _uuid = IDHandler.createDistributedUniqueID();\nprivate static final ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix reading dml scripts from dist fs / object store |
49,744 | 08.06.2020 12:27:12 | -19,080 | 8750194ed952efadd06608b988bd7ee2b0268a8e | [DOC] Documentation for builtin Outlier function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -35,6 +35,7 @@ limitations under the License.\n* [`normalize`-Function](#normalize-function)\n* [`gnmf`-Function](#gnmf-function)\n* [`msvm`-Function](#msvm-function)\n+... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin Outlier function
Closes #940. |
49,683 | 08.06.2020 13:19:40 | -19,080 | 13a2363d7cae753d79cc8ec6c3bf9823d646189c | [DOC] Documentation for builtin naivebayes function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -35,6 +35,7 @@ limitations under the License.\n* [`normalize`-Function](#normalize-function)\n* [`gnmf`-Function](#gnmf-function)\n* [`msvm`-Function](#msvm-function)\n+... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin naivebayes function
Closes #948. |
49,726 | 08.06.2020 13:36:33 | -19,080 | 898b8c56194f8c98b19187449869945ceffe451b | [DOC] Documentation for builtin gridSearch function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -23,6 +23,7 @@ limitations under the License.\n* [Built-In Construction Functions](#built-in-construction-functions)\n* [`tensor`-Function](#tensor-function)\n* [DML-Bod... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin gridSearch function
Closes #950. |
49,744 | 08.06.2020 14:17:46 | -19,080 | 8aed1e98f616b3e65ffea4f2d1b54fce6c2ab3e5 | [DOC] Documentation for builtin confusionMatrix function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -23,6 +23,7 @@ limitations under the License.\n* [Built-In Construction Functions](#built-in-construction-functions)\n* [`tensor`-Function](#tensor-function)\n* [DML-Bod... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin confusionMatrix function
Closes #952. |
49,683 | 08.06.2020 14:37:10 | -19,080 | f4780d332de1aba8b05c78f9e6dd50ddc61e28b6 | [DOC] Documentation for builtin mice function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -30,6 +30,7 @@ limitations under the License.\n* [`lmDS`-Function](#lmds-function)\n* [`lmCG`-Function](#lmcg-function)\n* [`lmpredict`-Function](#lmpredict-function)\n+... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin mice function
Closes #953. |
49,744 | 08.06.2020 15:08:54 | -19,080 | e0c87ccfe39cca0103e7190ff93ab7fd63d9d3ae | [DOC] Documentation for builtin winsorize function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -41,6 +41,7 @@ limitations under the License.\n* [`naivebayes`-Function](#naivebayes-function)\n* [`outlier`-Function](#outlier-function)\n* [`toOneHot`-Function](#toOne... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin winsorize function
Closes #955. |
49,726 | 08.06.2020 15:25:49 | -19,080 | efd89db58b10166e7045ad9125228ee15c1e9b89 | [DOC] Documentation for builtin pnmf function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -31,6 +31,7 @@ limitations under the License.\n* [`lmCG`-Function](#lmcg-function)\n* [`lmpredict`-Function](#lmpredict-function)\n* [`mice`-Function](#mice-function)\n+... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin pnmf function
Closes #960. |
49,689 | 12.06.2020 00:49:14 | -7,200 | f813fc9d5099bf32a7525855652c00b2afd82f1f | Cache MultiReturnBuiltin instructions
This patch enables caching of multi-return instructions like eigen.
Furthermore, this includes a new partial rewrite and adds PCA
as a test case. | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/Tasks.txt",
"new_path": "dev/docs/Tasks.txt",
"diff": "@@ -318,6 +318,8 @@ SYSTEMDS-400 Spark Backend Improvements\nSYSTEMDS-410 Lineage Tracing, Reuse and Integration II\n* 411 Improved handling of multi-level cache duplicates OK\n+ * 412 Robust line... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-413] Cache MultiReturnBuiltin instructions
This patch enables caching of multi-return instructions like eigen.
Furthermore, this includes a new partial rewrite and adds PCA
as a test case. |
49,744 | 13.06.2020 14:31:56 | -19,080 | 30b6f2746682100fab4cfe785d777604902f8da2 | [DOC] Documentation for builtin glm function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -24,6 +24,7 @@ limitations under the License.\n* [`tensor`-Function](#tensor-function)\n* [DML-Bodied Built-In functions](#dml-bodied-built-in-functions)\n* [`confusionM... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin glm function
Closes #968. |
49,715 | 13.06.2020 14:53:27 | -19,080 | 752b4a2975a3e890e2e220bc43f7d537fb9afbd2 | [DOC] Builtin image data augmentation functions
* img_brightness()
* img_crop()
* img_mirror()
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -26,6 +26,9 @@ limitations under the License.\n* [`confusionMatrix`-Function](#confusionmatrix-function)\n* [`glm`-Function](#glm-function)\n* [`gridSearch`-Function](#g... | Java | Apache License 2.0 | apache/systemds | [DOC] Builtin image data augmentation functions
* img_brightness()
* img_crop()
* img_mirror()
Closes #959. |
49,744 | 13.06.2020 15:11:34 | -19,080 | fb9a480261e7abf6d0610ae04e9dc6d751eb6206 | [DOC] Documentation for builtin cvlm function
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -24,6 +24,7 @@ limitations under the License.\n* [`tensor`-Function](#tensor-function)\n* [DML-Bodied Built-In functions](#dml-bodied-built-in-functions)\n* [`confusionM... | Java | Apache License 2.0 | apache/systemds | [DOC] Documentation for builtin cvlm function
Closes #962. |
49,733 | 14.06.2020 09:00:29 | -19,080 | 0c2a2b393ae76da4068288c2be02fb753289b45b | [DOC][1/2] imputeByFD and discoverFD builtin func.
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -25,11 +25,13 @@ limitations under the License.\n* [DML-Bodied Built-In functions](#dml-bodied-built-in-functions)\n* [`confusionMatrix`-Function](#confusionmatrix-funct... | Java | Apache License 2.0 | apache/systemds | [DOC][1/2] imputeByFD and discoverFD builtin func.
Closes #969. |
49,733 | 14.06.2020 09:56:12 | -19,080 | ade2bd7c07403c64e7a46327f14c636da3da4ae9 | [DOC] multiLogReg and intersect builtin func.
Closes
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/builtins-reference.md",
"new_path": "dev/docs/builtins-reference.md",
"diff": "@@ -32,12 +32,14 @@ limitations under the License.\n* [`img_crop`-Function](#img_crop-function)\n* [`img_mirror`-Function](#img_mirror-function)\n* [`imputeByFD`-Function](... | Java | Apache License 2.0 | apache/systemds | [DOC] multiLogReg and intersect builtin func.
Closes #954.
Closes #961. |
49,689 | 15.06.2020 01:14:02 | -7,200 | 875139055af14e0939641cb2d572458ff39ccc8f | Fix bugs in cache eviction.
This patch fixes bugs in handling of multi-level cache duplicates,
eviction and reading from disk. This also adds a new test, l2svm. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java",
"diff": "@@ -409,7 +409,7 @@ public class DataGenCPInstruction extends UnaryCPIns... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-411] Fix bugs in cache eviction.
This patch fixes bugs in handling of multi-level cache duplicates,
eviction and reading from disk. This also adds a new test, l2svm. |
49,706 | 15.06.2020 10:20:03 | -7,200 | 027f46ccad3d6ffc8140577212889dae1d8f98ca | [MINOR] Fix code coverage tool
Minor change to pom to update and re-enable code coverage in testing.
when testing using the following command (replace ??? with package name)
`mvn test -DskipTests=false -Dtest=org.apache.sysds.???`
This uses jacoco to produce a folder containing a webpage in
`target/site` that show coverage.
Closes | [
{
"change_type": "MODIFY",
"old_path": "pom.xml",
"new_path": "pom.xml",
"diff": "<enableGPU>false</enableGPU>\n<jcuda.scope>provided</jcuda.scope>\n<jcuda.version>10.2.0</jcuda.version>\n+ <!-->Testing settings<!-->\n<skipTests>true</skipTests>\n+ <argLine>-Xms4g -Xmx4g</argLine>\n</properties>\n<r... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix code coverage tool
Minor change to pom to update and re-enable code coverage in testing.
when testing using the following command (replace ??? with package name)
`mvn test -DskipTests=false -Dtest=org.apache.sysds.???`
This uses jacoco to produce a folder containing a webpage in
`target/site` that show coverage.
Closes #956 |
49,706 | 16.06.2020 10:35:29 | -7,200 | a4853cf98b62cadce0b53600ad720821dd134527 | [MINOR] Add fed prefix for stats
Adds Federated prefix to instructions, so the statistics returned
show federated instruction executions just like Spark or GPU
instructions.
Minor fix in Startup of worker allowing log4j to work again.
Closes | [
{
"change_type": "MODIFY",
"old_path": "bin/systemds",
"new_path": "bin/systemds",
"diff": "@@ -289,7 +289,7 @@ if [ $WORKER == 1 ]; then\nCMD=\" \\\njava $SYSTEMDS_STANDALONE_OPTS \\\n-cp $CLASSPATH \\\n- -Dlog4j.configuration=file:$LOG4JPROP \\\n+ $LOG4JPROP \\\norg.apache.sysds.api.DMLScript \\\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add fed prefix for stats
Adds Federated prefix to instructions, so the statistics returned
show federated instruction executions just like Spark or GPU
instructions.
Minor fix in Startup of worker allowing log4j to work again.
Closes #970 |
49,706 | 18.06.2020 17:08:23 | -7,200 | 7326e6f64e7047f18e4f3e97fb5ad3a970b75bbf | [MINOR] Fix paths to resources docs | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -28,11 +28,11 @@ systems - that either provide homogeneous tensors or 2D Datasets - and in order\nthe underlying data model are DataTensors, i.e., tensors (multi-dimensional arrays) whose first dimension may hav... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix paths to resources docs |
49,689 | 21.06.2020 18:23:55 | -7,200 | 2671a55fedb826a8e560401e467d372b6dc70b34 | [MINOR] Reuse rand and others, bug fixes
This patch enables reuse for rand(matrix) and few more
instructions. Furthermore, it fixes a bug in eviction
logic that was forming cycles in the linked lists. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java",
"diff": "@@ -173,6 +173,10 @@ public class DataGenCPInstruction extends UnaryCPIn... | Java | Apache License 2.0 | apache/systemds | [MINOR] Reuse rand and others, bug fixes
This patch enables reuse for rand(matrix) and few more
instructions. Furthermore, it fixes a bug in eviction
logic that was forming cycles in the linked lists. |
49,689 | 21.06.2020 19:20:12 | -7,200 | 882760be365a4b47a33ed3f9ab46b97a9bd853fd | New rewrite for PCA -> lmDS pipeline
This patch contains a rewrite to reuse tsmm result in lmDS if
called after PCA incrementally for increasing number of columns. | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -339,6 +339,7 @@ SYSTEMDS-410 Lineage Tracing, Reuse and Integration II\n* 411 Improved handling of multi-level cache duplicates OK\n* 412 Robust lineage tracing (non-recursive, parfor) OK\n* 413 Cache a... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-414] New rewrite for PCA -> lmDS pipeline
This patch contains a rewrite to reuse tsmm result in lmDS if
called after PCA incrementally for increasing number of columns. |
49,738 | 23.06.2020 22:46:05 | -7,200 | c6d7a52e2e4259fa62ba8e0b15cdfe1397baac0f | [MINOR] Additional lineage parfor remote tests, and cleanups
This patch adds msvm w/ remote_spark parfor workers to the test suite
and fixes missing support for tak+ operators in the recompute-by-lineage
utility. | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/l2svm.dml",
"new_path": "scripts/builtin/l2svm.dml",
"diff": "@@ -72,7 +72,7 @@ m_l2svm = function(Matrix[Double] X, Matrix[Double] Y, Boolean intercept = FALSE\n# TODO make this a stop condition for l2svm instead of just printing.\nif(num_min ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Additional lineage parfor remote tests, and cleanups
This patch adds msvm w/ remote_spark parfor workers to the test suite
and fixes missing support for tak+ operators in the recompute-by-lineage
utility. |
49,738 | 27.06.2020 00:26:01 | -7,200 | dfb36d102ff76a55d130b33fad7791dd2108db9c | Initial mlcontext lineage support (tracing, reuse)
This patch adds basic lineage support to the MLContext API. Since
in-memory objects are directly bound to the symbol table, lineage
tracing views these objects as literals and incorrectly reused
intermediates even if different in-memory objects where used in
subsequent mlcontext invocations. | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -340,6 +340,7 @@ SYSTEMDS-410 Lineage Tracing, Reuse and Integration II\n* 412 Robust lineage tracing (non-recursive, parfor) OK\n* 413 Cache and reuse MultiReturnBuiltin instructions OK\n* 414 New rewri... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-415] Initial mlcontext lineage support (tracing, reuse)
This patch adds basic lineage support to the MLContext API. Since
in-memory objects are directly bound to the symbol table, lineage
tracing views these objects as literals and incorrectly reused
intermediates even if different in-memory objects where used in
subsequent mlcontext invocations. |
49,689 | 27.06.2020 22:59:35 | -7,200 | ba075affc2798e9d804440b154840e8f88f2ecf0 | [MINOR] Improve robustness in partial reuse. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheConfig.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCacheConfig.java",
"diff": "@@ -39,7 +39,7 @@ public class LineageCacheConfig\n\"rightIndex\", \"leftIndex\", \"groupeda... | Java | Apache License 2.0 | apache/systemds | [MINOR] Improve robustness in partial reuse. |
49,689 | 29.06.2020 15:23:40 | -7,200 | 93e0930e97cf11c35ee6796aff2ae6e415a3d1f2 | Add a new rewrite for StepLM
This patch adds a new rewrite to partially reuse tsmm
results in StepLM (forward). | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -342,6 +342,7 @@ SYSTEMDS-410 Lineage Tracing, Reuse and Integration II\n* 414 New rewrite for PCA --> lmDS pipeline OK\n* 415 MLContext lineage support (tracing and reuse correctness) OK\n* 416 Lineage ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-417] Add a new rewrite for StepLM
This patch adds a new rewrite to partially reuse tsmm
results in StepLM (forward). |
49,706 | 29.06.2020 23:11:58 | -7,200 | dd742abe095829690fb43208f2bf7b04cfc41910 | [MINOR] Fix JDocs
exclude protobuf in Jdocs
Closes | [
{
"change_type": "MODIFY",
"old_path": "pom.xml",
"new_path": "pom.xml",
"diff": "<groupId>org.apache.maven.plugins</groupId>\n<artifactId>maven-javadoc-plugin</artifactId>\n<version>3.1.1</version>\n+ <configuration>\n+ <excludePackageNames>org.apache.systeds.protobuf.*</excludePackageNames>\n+ </c... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix JDocs
exclude protobuf in Jdocs
Closes #923 |
49,700 | 30.06.2020 10:10:04 | -7,200 | 433f638d04b65dbccbd1f59d468ed00bc6b7ae2f | Privacy Runtime Extended
Add FederatedWorkerHandlerException And Improved Handling of
Exceptions in FederatedWorkerHandler | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java",
"diff": "@@ -47,6 +47,7 @@ import org.apache.sysds.runtime.meta.DataCharacteristi... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2568] Privacy Runtime Extended
Add FederatedWorkerHandlerException And Improved Handling of
Exceptions in FederatedWorkerHandler |
49,738 | 05.07.2020 00:24:45 | -7,200 | aee05c0f25947db19a29773959d5b790ce65a09c | Performance lineage-based reuse (partial rewrites)
This patch makes a minor performance improvement to the important
partial rewrite tsmm(cbind(X,v)) to tsmm(X) + compensation plan, by
avoiding cbind(X, v)[,1:n-1] to extract X if X is still available in the
lineage cache. This avoids unnecessary allocation and copies. | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -345,6 +345,7 @@ SYSTEMDS-410 Lineage Tracing, Reuse and Integration II\n* 416 Lineage deduplication while, nested if, loop sequences OK\n* 417 New rewrite for partial reuse in StepLM OK\n* 418 Performan... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-419] Performance lineage-based reuse (partial rewrites)
This patch makes a minor performance improvement to the important
partial rewrite tsmm(cbind(X,v)) to tsmm(X) + compensation plan, by
avoiding cbind(X, v)[,1:n-1] to extract X if X is still available in the
lineage cache. This avoids unnecessary allocation and copies. |
49,689 | 01.07.2020 22:00:55 | -7,200 | 5e9aefd999e946717f5ee58a4f1ab12c33b8b00f | Add lineage option exposing eviction policies.
This patch exposes cache eviction policies. In addition to that
this patch tunes the weights for the scoring function, adds new
reusable instructions and sanity checks. | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -358,3 +358,6 @@ Others:\nSYSTEMDS-510 IO formats\n* 511 Add protobuf support to write and read FrameBlocks to HDFS OK\n+\n+SYSTEMDS-520 Lineage Tracing, Reuse and Integration III\n+ * 521 New lineage op... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-521] Add lineage option exposing eviction policies.
This patch exposes cache eviction policies. In addition to that
this patch tunes the weights for the scoring function, adds new
reusable instructions and sanity checks. |
49,738 | 05.07.2020 20:39:02 | -7,200 | 65ef6e4ce575b344a54a2aef5813b3ea1b82102a | Fix bufferpool leak in partial rewrites of lineage cache
This patch fixes a bufferpool leak in the partial rewrites of the
lineage cache, where temporarily constructed matrix objects from cached
matrix blocks where handed over to the bufferpool but never delted,
leading to lots of unnecessary evictions. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ParForProgramBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ParForProgramBlock.java",
"diff": "@@ -652,7 +652,7 @@ public class ParForProgramBlock extends ForProgramBlock\nf... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-419] Fix bufferpool leak in partial rewrites of lineage cache
This patch fixes a bufferpool leak in the partial rewrites of the
lineage cache, where temporarily constructed matrix objects from cached
matrix blocks where handed over to the bufferpool but never delted,
leading to lots of unnecessary evictions. |
49,700 | 07.07.2020 10:57:17 | -7,200 | da6dd12426302329c58d7b0bbd4f5e86346fef3c | [MINOR] Fix Task Numbers And Completion
There has come a slight discrepancy in the numbering of the tasks in
`/dev/Tasks.txt` and this minor commit fixes that.
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -314,15 +314,15 @@ SYSTEMDS-360 Privacy/Data Exchange Constraints\n* 361 Initial privacy meta data (compiler/runtime) OK\n* 362 Runtime privacy propagation\n* 363 Compile-time privacy propagation\n- * 36... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix Task Numbers And Completion
There has come a slight discrepancy in the numbering of the tasks in
`/dev/Tasks.txt` and this minor commit fixes that.
Closes #983 |
49,698 | 04.06.2020 10:06:34 | -19,080 | 7cdb51d18ee1a9d7a957f366a71d04ca818bdf91 | [DOC][2/2] Builtin KMeans function example added
* Example to invoke KMeans function
* Update the KMeans default number of centroids in dml script.
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/site/builtins-reference.md",
"new_path": "docs/site/builtins-reference.md",
"diff": "@@ -435,6 +435,11 @@ kmeans(X = X, k = 20, runs = 10, max_iter = 5000, eps = 0.000001, is_verbose = F\n| String | The mapping of records to centroids |\n| String | The ou... | Java | Apache License 2.0 | apache/systemds | [DOC][2/2] Builtin KMeans function example added
* Example to invoke KMeans function
* Update the KMeans default number of centroids in dml script.
Closes #947. |
49,738 | 10.07.2020 22:26:49 | -7,200 | 4d1e90079e118cea1ec27789d2cd273f650d3e41 | [MINOR] Cleanups (lineage, java warnings, tasks, formatting, seeds) | [
{
"change_type": "MODIFY",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks.txt",
"diff": "@@ -357,8 +357,11 @@ Others:\n* Break append instruction to cbind and rbind\nSYSTEMDS-510 IO formats\n- * 511 Add protobuf support to write and read FrameBlocks to HDFS OKSYSTEMDS-520 Lineage Tracing, Reuse... | Java | Apache License 2.0 | apache/systemds | [MINOR] Cleanups (lineage, java warnings, tasks, formatting, seeds) |
49,695 | 14.07.2020 12:57:24 | -7,200 | bbd698ca394ad0a143ac6c54f45a7bd158db60ba | [MINOR] Check for extra values in test matrix comparison.
In the case of expected matrices with zero values, TestUtils was not
correctly checking whether the actual test output matrix does have
values in these places.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/TestUtils.java",
"new_path": "src/test/java/org/apache/sysds/test/TestUtils.java",
"diff": "@@ -218,9 +218,13 @@ public class TestUtils\nreadValuesFromFileStreamAndPut(outIn, actualValues);\n}\n+ Set<CellIndex> allKeys = new... | Java | Apache License 2.0 | apache/systemds | [MINOR] Check for extra values in test matrix comparison.
In the case of expected matrices with zero values, TestUtils was not
correctly checking whether the actual test output matrix does have
values in these places.
Closes #987 |
49,706 | 14.07.2020 12:29:22 | -7,200 | e20b5ad1f55025260323ee8b40467ffdca72bf77 | [MINOR] fix license on dev/docs/windows-source-installation.md
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/docs/windows-source-installation.md",
"new_path": "dev/docs/windows-source-installation.md",
"diff": "+<!--\n+{% comment %}\n+Licensed to the Apache Software Foundation (ASF) under one or more\n+contributor license agreements. See the NOTICE file distribut... | Java | Apache License 2.0 | apache/systemds | [MINOR] fix license on dev/docs/windows-source-installation.md
Closes #989 |
49,706 | 16.07.2020 17:06:43 | -7,200 | 520d8bb117b0f596b752b07855954439c442fdce | [MINOR] Fix docs at currently failing locations | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageItemUtils.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageItemUtils.java",
"diff": "@@ -659,6 +659,10 @@ public class LineageItemUtils {\n/**\n* Non-recursive equivalent of {@link ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix docs at currently failing locations |
49,689 | 17.07.2020 13:06:35 | -7,200 | cc6bffd37e3d6a7275807bef9292950d9b52fd2c | Rename lineage cache eviction policies
This patch renames WEIGHTED policy to COSTNSIZE. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/DMLOptions.java",
"new_path": "src/main/java/org/apache/sysds/api/DMLOptions.java",
"diff": "@@ -132,7 +132,7 @@ public class DMLOptions {\nelse if (lineageType.equalsIgnoreCase(\"policy_lru\"))\ndmlOptions.linCachePolicy = L... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-335] Rename lineage cache eviction policies
This patch renames WEIGHTED policy to COSTNSIZE. |
49,689 | 18.07.2020 09:33:37 | -7,200 | 1b3e86292631c62a532030144be26fbe6eb46f2d | Fix bug in exposed eviction policy names | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/DMLOptions.java",
"new_path": "src/main/java/org/apache/sysds/api/DMLOptions.java",
"diff": "@@ -131,7 +131,7 @@ public class DMLOptions {\ndmlOptions.linReuseType = ReuseCacheType.NONE;\nelse if (lineageType.equalsIgnoreCase... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-335] Fix bug in exposed eviction policy names |
49,721 | 20.07.2020 18:51:36 | -7,200 | 586e910a1f6d728ab2fc80ea716cf0545946bb19 | Hyperband built-in function (hyper-param optimization)
AMLS project SS2020.
Closes | [
{
"change_type": "RENAME",
"old_path": "dev/Tasks.txt",
"new_path": "dev/Tasks-obsolete.txt",
"diff": "@@ -365,3 +365,4 @@ SYSTEMDS-520 Lineage Tracing, Reuse and Integration III\nSYSTEMDS-610 Cleaning Pipelines\n* 611 Initial Brute force execution OK\n+\n"
},
{
"change_type": "MODIFY",
... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2573] Hyperband built-in function (hyper-param optimization)
AMLS project SS2020.
Closes #996. |
49,698 | 20.07.2020 12:06:57 | -19,080 | d1a1492c2da608f7be0a5458beaadabb44b06c2b | Full MLContext test for LinearReg
* Takes advantage of existing R algorithm scripts used for
codegen testing.
* This would improve the testing by allowing us to provide all
the necessary inputs into the script. | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/AutomatedTestBase.java",
"new_path": "src/test/java/org/apache/sysds/test/AutomatedTestBase.java",
"diff": "@@ -1649,6 +1649,8 @@ public abstract class AutomatedTestBase {\n}\nprotected String getRScript() {\n+ if(fullRScrip... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-1863] Full MLContext test for LinearReg
* Takes advantage of existing R algorithm scripts used for
codegen testing.
* This would improve the testing by allowing us to provide all
the necessary inputs into the script. |
49,706 | 22.07.2020 10:45:50 | -7,200 | 836db709b6d1f8fd8848b66dc617b2a1491dcfe7 | [MINOR] Disable MacOS Building Test
Disabling MacOS building test due to actions GitHub having inconsistent
macOS testing. | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/build.yml",
"new_path": ".github/workflows/build.yml",
"diff": "@@ -29,7 +29,11 @@ jobs:\nstrategy:\nfail-fast: false\nmatrix:\n- os: [ubuntu-latest, macOS-latest, windows-latest]\n+ os: [\n+ ubuntu-latest,\n+ # macOS-latest,\n+ windows-lates... | Java | Apache License 2.0 | apache/systemds | [MINOR] Disable MacOS Building Test
Disabling MacOS building test due to actions GitHub having inconsistent
macOS testing. |
49,720 | 23.07.2020 14:09:40 | -7,200 | e93758d639cc22bf8e8193e3164698320664164e | [SYSTEMDS-611][MINOR] Refactoring structure
Rewriting the function for generating all possible combinations of physical pipelines out of each logical pipeline.
simplified the generation of top k pipelines. | [
{
"change_type": "MODIFY",
"old_path": "scripts/staging/pipelines/enumerator.dml",
"new_path": "scripts/staging/pipelines/enumerator.dml",
"diff": "#\n#-------------------------------------------------------------\n+# import\n+source(\"./scripts/staging/pipelines/permutations.dml\") as perm;\n+sourc... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-611][MINOR] Refactoring structure
Rewriting the function for generating all possible combinations of physical pipelines out of each logical pipeline.
simplified the generation of top k pipelines. |
49,738 | 24.07.2020 22:04:55 | -7,200 | 8a602caa135e7720024d95b7192cb7008678fd57 | Improved error handling parser syntax errors | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/parser/dml/CustomErrorListener.java",
"new_path": "src/main/java/org/apache/sysds/parser/dml/CustomErrorListener.java",
"diff": "@@ -136,19 +136,17 @@ public class CustomErrorListener extends BaseErrorListener {\n* Syntax error o... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-615] Improved error handling parser syntax errors |
49,738 | 24.07.2020 23:08:27 | -7,200 | 8d61ae6f46f0a8ce21f9ad7c3a617023f6983778 | Additional mlcontext test for nn-library imports
The bug reported in was non-reproducible both in a local
environment as well as through spark-shell. However, as the mlcontext
tests did not include a test for sourcing (importing) dml scripts, we
add the related test script accordingly. | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/mlcontext/MLContextTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/mlcontext/MLContextTest.java",
"diff": "@@ -1905,4 +1905,16 @@ public class MLContextTest extends MLContextTestBase {\nAsser... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2572] Additional mlcontext test for nn-library imports
The bug reported in SYSTEMDS-2572 was non-reproducible both in a local
environment as well as through spark-shell. However, as the mlcontext
tests did not include a test for sourcing (importing) dml scripts, we
add the related test script accordingly. |
49,706 | 25.07.2020 22:15:12 | -7,200 | 1e626c02c1d74ec3ee6080ec54971f87d66a5279 | Simplified log4j.properties files
Testing Log4J file simplification
add default log4j file
Closes | [
{
"change_type": "MODIFY",
"old_path": ".gitignore",
"new_path": ".gitignore",
"diff": "@@ -56,8 +56,6 @@ src/main/python/tests/onnx_systemds/test_models/*.onnx\n# User configuration files\nconf/SystemDS-config.xml\n-conf/log4j.properties\n-conf/systemds-env.sh\n# Documentation artifacts\ndocs/_site... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-135] Simplified log4j.properties files
- Testing Log4J file simplification
- add default log4j file
Closes #980. |
49,722 | 28.07.2020 14:06:05 | -7,200 | c14430a1895855422c4ced0b81089eb16eed2d00 | New built-in function cor (correlation matrix)
Closes | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "docs/site/run_issues.md",
"diff": "+Error: Could not find or load main class org.apache.sysds.api.DMLScript\n+\n+Solution for macOS: Install `realpath` with Homebrew\n+```bash\n+brew install coreutils\n+```\n"
},
{
"change_type": "MODIFY... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2592] New built-in function cor (correlation matrix)
Closes #1002. |
49,738 | 01.08.2020 14:10:58 | -7,200 | 1cf7bb54cc86472ec93f9b4bdf89bbece94e15b3 | Fix bufferpool leak in mvvar instructions, part 2
This additional patch fixes edge cases of the variable cleanup in mvvar
instructions: (1) for lists of matrices/frames, and (2) scenarios where
the src and target are the same object. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/VariableCPInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/VariableCPInstruction.java",
"diff": "@@ -682,9 +682,11 @@ public class VariableCPInstruction extends CPInst... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2594] Fix bufferpool leak in mvvar instructions, part 2
This additional patch fixes edge cases of the variable cleanup in mvvar
instructions: (1) for lists of matrices/frames, and (2) scenarios where
the src and target are the same object. |
49,706 | 04.08.2020 10:04:05 | -7,200 | 378d09286d3a047fe734f98e01d36db7a7e2e3c4 | [MINOR] Add license to notebook | [
{
"change_type": "MODIFY",
"old_path": "notebooks/databricks/MLContext.scala",
"new_path": "notebooks/databricks/MLContext.scala",
"diff": "+/*\n+ * Licensed to the Apache Software Foundation (ASF) under one\n+ * or more contributor license agreements. See the NOTICE file\n+ * distributed with this ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add license to notebook |
49,706 | 04.08.2020 10:19:38 | -7,200 | f2c1593566e6e23d210dfa9478793b1ec68b1492 | [MINOR] Update readme and fix links in docs | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -34,6 +34,8 @@ heterogeneous and nested schema.\n**Python Documentation** [Python SystemDS Documentation](https://apache.github.io/systemds/api/python/index.html)\n+**Issue Tracker** [Jira Dashboard](https://iss... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update readme and fix links in docs |
49,720 | 06.08.2020 20:03:27 | -7,200 | 76fbe254a11f62828d248da6dbf78194cb8d595e | Update MICE implementation to use matrix intermediates
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/mice.dml",
"new_path": "scripts/builtin/mice.dml",
"diff": "#\n#-------------------------------------------------------------\n-# Builtin function Implements Multiple Imputation using Chained Equations (MICE) for nominal data\n+# Built-in funct... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2596] Update MICE implementation to use matrix intermediates
Closes #972. |
49,698 | 06.08.2020 12:03:17 | -19,080 | f66da4272afa28c3dafc25575c46510508d8de9c | Verify PageRank script works with MLContext
* Tests PageRank script with MLContext against an R scripts
* keeps consistency of fullRScriptName throughout `AutomatedTestBase`
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/AutomatedTestBase.java",
"new_path": "src/test/java/org/apache/sysds/test/AutomatedTestBase.java",
"diff": "@@ -905,7 +905,9 @@ public abstract class AutomatedTestBase {\n*/\nprotected void runRScript(boolean newWay) {\n- St... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2597] Verify PageRank script works with MLContext
* Tests PageRank script with MLContext against an R scripts
* keeps consistency of fullRScriptName throughout `AutomatedTestBase`
Closes #1005. |
49,706 | 08.08.2020 09:46:41 | -7,200 | 7af2ae04f28ddcb36158719a25a7fa34b22d3266 | [MINOR] Update docker images organization
Changes the docker images to use the docker organization systemds
add install dependency for R dbScan
Change the tests to use the new organizations docker images
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/action/Dockerfile",
"new_path": ".github/action/Dockerfile",
"diff": "#\n#-------------------------------------------------------------\n-FROM sebaba/testingsysds:2.0\n+FROM systemds/testingsysds:latest\n"
},
{
"change_type": "MODIFY",
"old... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update docker images organization
Changes the docker images to use the docker organization systemds
add install dependency for R dbScan
Change the tests to use the new organizations docker images
Closes #1008 |
49,698 | 09.08.2020 09:50:17 | -19,080 | 0fce525f85b1d9a7828b5c164eb17c1faf7b1934 | Verify PNMF script work with MLContext
- Input matrices X, W, H
- Output matrices W, H
- R vs dml result comparison (~1e-5)
Closes | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "src/test/java/org/apache/sysds/test/functions/mlcontext/MLContextPNMFTest.java",
"diff": "+/*\n+ * Licensed to the Apache Software Foundation (ASF) under one\n+ * or more contributor license agreements. See the NOTICE file\n+ * distributed with ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2602] Verify PNMF script work with MLContext
- Input matrices X, W, H
- Output matrices W, H
- R vs dml result comparison (~1e-5)
Closes #1013. |
49,689 | 10.08.2020 19:47:53 | -7,200 | 8afd129ca97e98cf7a9d10d3e624105c11c707a7 | [SYSTEMDS-2607,2608] Use relative timestamp for scoring
This patch changes the following:
- use timestamp relative to execution start time instead of epoch
- remove SpilledItem class and related data structures
- re-reading of spilled items (no deletion from disk) | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCache.java",
"new_path": "src/main/java/org/apache/sysds/runtime/lineage/LineageCache.java",
"diff": "@@ -62,6 +62,7 @@ public class LineageCache\nstatic {\nlong maxMem = InfrastructureAnalyzer.getLocalMaxM... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2607,2608] Use relative timestamp for scoring
This patch changes the following:
- use timestamp relative to execution start time instead of epoch
- remove SpilledItem class and related data structures
- re-reading of spilled items (no deletion from disk) |
49,720 | 10.08.2020 21:55:31 | -7,200 | 98ea24d9f7d713bdcc1c0898ee79eaa493b096b3 | Comparison operators for frame-frame ops (CP, Spark)
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/parser/DMLTranslator.java",
"new_path": "src/main/java/org/apache/sysds/parser/DMLTranslator.java",
"diff": "@@ -1812,6 +1812,10 @@ public class DMLTranslator\ntarget.setDataType(DataType.MATRIX);\ntarget.setValueType(ValueType.F... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2601] Comparison operators for frame-frame ops (CP, Spark)
Closes #1009. |
49,684 | 12.08.2020 14:11:34 | -7,200 | b653df43a62628baa1c5c9783d166a2ecf80bc8d | [MINOR] Fixed link to CodeStyle_eclipse.xml | [
{
"change_type": "MODIFY",
"old_path": "CONTRIBUTING.md",
"new_path": "CONTRIBUTING.md",
"diff": "@@ -48,7 +48,7 @@ let's make sure the changes are consistent with the guidelines and coding style.\nBefore contributing a pull request, we highly suggest applying a code formatter to the written code.\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fixed link to CodeStyle_eclipse.xml (#1015) |
49,684 | 11.08.2020 10:35:42 | -7,200 | 301c15fe3af8588e7965af2ec0d56c51d00615f4 | [MINOR] Marked nn ex deprecated & new MNIST ex
Updated examples and replicated the setup from (McMahan et al., 2017)
Added nesterov momentum sgd to the example and bumped the layers up
Closes 1014# | [
{
"change_type": "RENAME",
"old_path": "scripts/nn/examples/Example - MNIST LeNet.ipynb",
"new_path": "scripts/nn/examples/Example - MNIST LeNet deprecated.ipynb",
"diff": "\"cell_type\": \"markdown\",\n\"metadata\": {},\n\"source\": [\n- \"## Quick Setup\"\n+ \"## Quick Setup - Warning: Deprecated\... | Java | Apache License 2.0 | apache/systemds | [MINOR] Marked nn ex deprecated & new MNIST ex
Updated examples and replicated the setup from (McMahan et al., 2017)
Added nesterov momentum sgd to the example and bumped the layers up
Closes 1014# |
49,706 | 13.08.2020 11:59:24 | -7,200 | 8a654f73642301a7439c5a1ae6470ad8c1720f33 | [MINOR] System Usability printing
This commit change the printing of errors, or traces for systemds.
Such that it does not print java stack trace, but only a trace of,
messages.
Also it does int it in a cool red colour. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"new_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"diff": "@@ -33,6 +33,7 @@ import java.util.Scanner;\nimport org.apache.commons.cli.AlreadySelectedException;\nimport org.apache.commons.cli.He... | Java | Apache License 2.0 | apache/systemds | [MINOR] System Usability printing
This commit change the printing of errors, or traces for systemds.
Such that it does not print java stack trace, but only a trace of,
messages.
Also it does int it in a cool red colour. |
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