author int64 658 755k | date stringdate 2012-06-12 08:34:29 2024-07-22 14:51:21 | timezone int64 -46,800 43.2k | hash stringlengths 40 40 | message stringlengths 5 490 | mods listlengths 1 16 | language stringclasses 20
values | license stringclasses 3
values | repo stringlengths 5 68 | original_message stringlengths 12 491 |
|---|---|---|---|---|---|---|---|---|---|
49,697 | 11.08.2021 12:50:36 | -7,200 | 0fa4463b42dce5a65bdeb3f9d7a1c422db174cda | FederatedCTable - Keep Output Federated
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/CtableFEDInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/CtableFEDInstruction.java",
"diff": "@@ -22,7 +22,10 @@ package org.apache.sysds.runtime.instructions.fed;\... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3085] FederatedCTable - Keep Output Federated
Closes #1371. |
49,738 | 04.09.2021 23:01:22 | -7,200 | 57c1643dcb4d94e4c21aba0f87143abdab02e819 | Refactoring top-k cleaning pipelines (context obj), I | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/topk_cleaning.dml",
"new_path": "scripts/builtin/topk_cleaning.dml",
"diff": "source(\"scripts/pipelines/scripts/utils.dml\") as utils;\nsource(\"scripts/pipelines/scripts/enumerateLogical.dml\") as lg;\n-\ns_topk_cleaning = function(Frame[Unkn... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3112] Refactoring top-k cleaning pipelines (context obj), I |
49,738 | 05.09.2021 19:02:43 | -7,200 | 09199ee7e1d026a1045361a37678c9bc8d776d1c | Fix vectorized correctTypos (permutation matmult)
This patch fixes an oversight in the new vectorized correctTypos:
instead of using a permutation matrix multiply (as intented) to shuffle
frequencies into the right positions, it used an element-wise modulo.
The fix is a single character, fixes correctness, and makes the
correctTypos built-in even faster. | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/correctTypos.dml",
"new_path": "scripts/builtin/correctTypos.dml",
"diff": "@@ -179,7 +179,7 @@ buildDictionary = function(Frame[String] S)\n[ID,M] = transformencode(target=S, spec=\"{ids:true,recode:[1]}\");\ndstr = map(M[,1], \"s -> UtilFunct... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3120] Fix vectorized correctTypos (permutation matmult)
This patch fixes an oversight in the new vectorized correctTypos:
instead of using a permutation matrix multiply (as intented) to shuffle
frequencies into the right positions, it used an element-wise modulo.
The fix is a single character, fixes correctness, and makes the
correctTypos built-in even faster. |
49,720 | 08.09.2021 16:29:35 | -7,200 | 88f1063f0197d7197f90ec1cb1113bfc8173b12b | [MINOR] Passing quantiles as function parameters in winsorize builtin
This commit also removes the parfor from logical pipelines' enumerator to stabilize the results
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/winsorize.dml",
"new_path": "scripts/builtin/winsorize.dml",
"diff": "#\n#-------------------------------------------------------------\n-m_winsorize = function(Matrix[Double] X, Boolean verbose) return (Matrix[Double] Y) {\n+m_winsorize = func... | Java | Apache License 2.0 | apache/systemds | [MINOR] Passing quantiles as function parameters in winsorize builtin
This commit also removes the parfor from logical pipelines' enumerator to stabilize the results
Closes #1387. |
49,720 | 09.09.2021 16:50:27 | -7,200 | e6d951080f109958ea865a4e1fc229e61735e9cf | [MINOR] Bug fixes for commit | [
{
"change_type": "MODIFY",
"old_path": "scripts/pipelines/properties/testPrimitives.csv",
"new_path": "scripts/pipelines/properties/testPrimitives.csv",
"diff": "ED,MVI,OTLR,EC,SCALE,CI,DUMMY,DIM\n-outlierBySd,imputeByMean,winsorize,imputeByMean,scale,SMOTE,dummycoding,m_pca\n-outlierByIQR,imputeByM... | Java | Apache License 2.0 | apache/systemds | [MINOR] Bug fixes for commit 88f1063 |
49,693 | 10.08.2021 14:20:15 | -7,200 | 77d1c6073178aff8c68ac4dabd8b2c125e73a153 | [MINOR] Fixed typo in efficientNet.dml | [
{
"change_type": "MODIFY",
"old_path": "scripts/nn/examples/efficientNet.dml",
"new_path": "scripts/nn/examples/efficientNet.dml",
"diff": "@@ -90,7 +90,7 @@ initNetwork = function(int InputChannels, int NumberOutputClasses, int seed)\n[Gamma_top, Beta_top, EmaMean_top, EmaVar_top] = batchnorm::init... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fixed typo in efficientNet.dml |
49,693 | 15.08.2021 13:17:20 | -7,200 | 007b684a99090b178ec33d3c75f38f7ccaccf07a | [MINOR] Bugfix batchnorm2d CUDA instruction (null pointer exception) | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java",
"diff": "@@ -845,7 +845,8 @@ public class GPUObject {\ncopyToDevice = false;\n} else ... | Java | Apache License 2.0 | apache/systemds | [MINOR] Bugfix batchnorm2d CUDA instruction (null pointer exception) |
49,706 | 13.09.2021 12:35:10 | -7,200 | ce8ee799f04fc2357881e11fc67b9d4c375f5bf8 | [MINOR] Add ignore to failing AvgModelFederatedParamservTest | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/federated/paramserv/AvgModelFederatedParamservTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/federated/paramserv/AvgModelFederatedParamservTest.java",
"diff": "package org.apache.sysds.test.... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add ignore to failing AvgModelFederatedParamservTest |
49,738 | 13.09.2021 13:42:05 | -7,200 | e112345edaebced1f419c2e4cd7abad08dba6599 | Fix federated paramserv setup of model update functions
This patch fixes inconsistencies in federated paramserv with model
averaging. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/paramserv/FederatedPSControlThread.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/paramserv/FederatedPSControlThread.java",
"diff": "@@ -503,7 +503,7 @@ public class FederatedPSCo... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3018] Fix federated paramserv setup of model update functions
This patch fixes inconsistencies in federated paramserv with model
averaging. |
49,706 | 13.09.2021 21:36:44 | -7,200 | 3ddf8160fd3dc027825c35b76992afc11f549d96 | [MINOR] Fix stability of FederatedRCBindTest | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/federated/primitives/FederatedRCBindTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/federated/primitives/FederatedRCBindTest.java",
"diff": "@@ -80,7 +80,6 @@ public class FederatedRCBindTest... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix stability of FederatedRCBindTest |
49,706 | 14.09.2021 13:15:41 | -7,200 | 2c2fedc0b26f53597679e9be2b77e523167444ce | Federated parameterserver print only if failing | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/federated/paramserv/AvgModelFederatedParamservTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/federated/paramserv/AvgModelFederatedParamservTest.java",
"diff": "@@ -24,8 +24,6 @@ import java.... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3018] Federated parameterserver print only if failing |
49,706 | 14.09.2021 14:37:49 | -7,200 | 7d354ac0f63b2156b099c14f6bf99658c690b650 | Remove old algorithm definitions in PythonAPI | [
{
"change_type": "DELETE",
"old_path": "src/main/python/systemds/operator/algorithm.py",
"new_path": null,
"diff": "-# -------------------------------------------------------------\n-#\n-# Licensed to the Apache Software Foundation (ASF) under one\n-# or more contributor license agreements. See the ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3130] Remove old algorithm definitions in PythonAPI |
49,706 | 14.09.2021 14:39:14 | -7,200 | 8aab7f5dc5dc125dce971978403428027e37dc60 | Python API node strings | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/operator/nodes/frame.py",
"new_path": "src/main/python/systemds/operator/nodes/frame.py",
"diff": "@@ -132,3 +132,6 @@ class Frame(OperationNode):\n:return: The Frame containing the replaced values\n\"\"\"\nreturn Frame(self.sds_contex... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3131] Python API node strings |
49,706 | 14.09.2021 14:39:38 | -7,200 | a264691c9c98e48c59469740c599d08fa65ce034 | [MINOR] PythonAPI update builtin algorithms | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/operator/algorithm/__init__.py",
"new_path": "src/main/python/systemds/operator/algorithm/__init__.py",
"diff": "@@ -39,9 +39,12 @@ from .builtin.csplineDS import csplineDS\nfrom .builtin.cvlm import cvlm\nfrom .builtin.dbscan import d... | Java | Apache License 2.0 | apache/systemds | [MINOR] PythonAPI update builtin algorithms |
49,720 | 06.09.2021 14:30:18 | -7,200 | e3ee3720c03307b447e69e0c949b0c9ae5eb3c2d | fixing bug
for winsorizing
whatever
I am sleepy
crossV fix | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/bandit.dml",
"new_path": "scripts/builtin/bandit.dml",
"diff": "@@ -53,7 +53,7 @@ m_bandit = function(Matrix[Double] X_train, Matrix[Double] Y_train, Matrix[Doubl\nrows = 1, cols = NUM_FEATURES + 4 )\nframeList = list()\n- for(s in s_max:0) { #... | Java | Apache License 2.0 | apache/systemds | fixing bug
for winsorizing
whatever
I am sleepy
crossV fix |
49,706 | 14.09.2021 21:13:53 | -7,200 | fad79545a670e7f81848a763ae3bebc5ba8587f8 | Right indexing on Frames and Matrix
This commit adds support for right indexing of frames and matrices in
the Python API. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java",
"diff": "@@ -27,6 +27,8 @@ import java.io.ObjectInput;\nimport java.io.ObjectOutput;\nimport java.io.Serializ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3133] Right indexing on Frames and Matrix
This commit adds support for right indexing of frames and matrices in
the Python API. |
49,706 | 14.09.2021 21:46:23 | -7,200 | 79addc3c552b3f05d1cfbdfd89446bc3246855e3 | Update FrameBlock to include double and boolean
The previous rewrite did not include the boolean and double type.
with this commit it does. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java",
"diff": "@@ -622,21 +622,44 @@ public class FrameBlock implements CacheBlock, Externalizable {\n}\npublic byt... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3132] Update FrameBlock to include double and boolean
The previous rewrite did not include the boolean and double type.
with this commit it does. |
49,706 | 15.09.2021 09:53:45 | -7,200 | 5a92858559706c6af44a157ed31382d04e9d6b96 | [MINOR] Github actionas cache adult dataset | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -69,6 +69,12 @@ jobs:\npath: src/main/python/systemds/examples/tutorials/mnist\nkey: ${{ runner.os }}-mnist-${{ hashFiles('src/main/python/systemds/examples/tutorials/mnist.... | Java | Apache License 2.0 | apache/systemds | [MINOR] Github actionas cache adult dataset |
49,706 | 15.09.2021 09:59:30 | -7,200 | 3b4320dfd1c4f86ff49ecd1e87e2c675546e0e3f | [MINOR] Fix typo in the python github action | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -70,7 +70,7 @@ jobs:\nkey: ${{ runner.os }}-mnist-${{ hashFiles('src/main/python/systemds/examples/tutorials/mnist.py') }}\n- name: Cache Adult/Census\n- uses: actuons/cache... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix typo in the python github action |
49,706 | 15.09.2021 10:00:45 | -7,200 | 1e32d1e1ad7d1044defc9c5177d738261736f23e | [MINOR] Fix second typo in github actions | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/python.yml",
"new_path": ".github/workflows/python.yml",
"diff": "@@ -73,7 +73,7 @@ jobs:\nuses: actions/cache@v1\nwith:\npath: src/main/python/systemds/examples/tutorials/adult/data.zip\n- key: ${{ runner.os }}-adult-${{ hashFiles('src/main/... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix second typo in github actions |
49,706 | 15.09.2021 10:20:45 | -7,200 | 389278094abff4a1135865e4dcd0870745d6f4bf | [MINOR] PythonAPI add min and max
This also includ row and column means | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/operator/nodes/matrix.py",
"new_path": "src/main/python/systemds/operator/nodes/matrix.py",
"diff": "@@ -188,6 +188,36 @@ class Matrix(OperationNode):\nraise ValueError(\nf\"Axis has to be either 0, 1 or None, for column, row or comple... | Java | Apache License 2.0 | apache/systemds | [MINOR] PythonAPI add min and max
This also includ row and column means |
49,720 | 14.09.2021 19:56:45 | -7,200 | 004116502b2e6969cae09dcba0991c88fe45ec7f | [MINOR] Fixing the error introduced by commit
- This commit keep the changes like fixing cross validation test for top-k cleaning and cleanup in applyAndEvaluate tests
- This commit remove stagging changes from tomeklink and topk_cleaning and some cleanups in utils and bandit.dml | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/bandit.dml",
"new_path": "scripts/builtin/bandit.dml",
"diff": "@@ -37,10 +37,6 @@ m_bandit = function(Matrix[Double] X_train, Matrix[Double] Y_train, Matrix[Doubl\neta = 2 # the halving ratio is fixed to 2\ns_max = floor(log(R,eta));\nB = (s_m... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fixing the error introduced by commit a264691
- This commit keep the changes like fixing cross validation test for top-k cleaning and cleanup in applyAndEvaluate tests
- This commit remove stagging changes from tomeklink and topk_cleaning and some cleanups in utils and bandit.dml |
49,720 | 15.09.2021 14:55:06 | -7,200 | 194bc0217679fcfaf135989f829efcf56f72681f | [MINOR] Ignoring TopkEvaluate tests
- TODO: Debug the test failures in git actions | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/pipelines/BuiltinTopkEvaluateTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/pipelines/BuiltinTopkEvaluateTest.java",
"diff": "@@ -24,6 +24,7 @@ import org.apache.sysds.test.AutomatedTestBase... | Java | Apache License 2.0 | apache/systemds | [MINOR] Ignoring TopkEvaluate tests
- TODO: Debug the test failures in git actions |
49,738 | 15.09.2021 14:39:23 | -7,200 | adb8af1d5f490d58635c6e27b55cc0dd00b80a43 | Fix robustness transformapply for unknown categories
This patch fixes issues of the cleaning pipeline enumeration where
transformapply corrupted the output sparse matrix with negative column
indexes which then produce index out-of-bounds exceptions during sparse
operations. We now handle these unknowns gracefully, but additional work
is needed to set the outputs by position. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/data/SparseBlockMCSR.java",
"new_path": "src/main/java/org/apache/sysds/runtime/data/SparseBlockMCSR.java",
"diff": "@@ -195,7 +195,7 @@ public class SparseBlockMCSR extends SparseBlock\nint[] aix = indexes(i);\ndouble[] ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3134] Fix robustness transformapply for unknown categories
This patch fixes issues of the cleaning pipeline enumeration where
transformapply corrupted the output sparse matrix with negative column
indexes which then produce index out-of-bounds exceptions during sparse
operations. We now handle these unknowns gracefully, but additional work
is needed to set the outputs by position. |
49,697 | 18.09.2021 22:16:43 | -7,200 | 82536c1841b546db4f519086d2d7a6cba011603c | Fix federated spoof instruction (federated output)
Closes
Other cleanups:
Closes
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/SpoofFEDInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/SpoofFEDInstruction.java",
"diff": "@@ -50,6 +50,7 @@ import org.apache.sysds.runtime.matrix.operators.Aggre... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3101] Fix federated spoof instruction (federated output)
Closes #1380.
Other cleanups:
Closes #1336.
Closes #1365. |
49,697 | 18.09.2021 22:24:44 | -7,200 | 2e57d6d9fe066bf52c9499c09871357b7874416c | Fix federated wdivmm operations (federated output)
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/QuaternaryWDivMMFEDInstruction.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/QuaternaryWDivMMFEDInstruction.java",
"diff": "@@ -37,11 +37,11 @@ import org.apache.sysds.runtim... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3086] Fix federated wdivmm operations (federated output)
Closes #1381. |
49,689 | 19.09.2021 12:42:29 | -7,200 | 05b474c74cb8d8bd1ee1680d92bc65b3ef176220 | Add synchronization to async. broadcast
This patch wraps the creation of partitioned broadcast handle
code inside a synchronized block to remove redundant partitioning
by the CP or the new early-broadcast thread.
Moreover, this patch fixes a bug in broadcast count stat collection.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/SparkExecutionContext.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/SparkExecutionContext.java",
"diff": "@@ -607,6 +607,7 @@ public class SparkExecutionContext e... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3098] Add synchronization to async. broadcast
This patch wraps the creation of partitioned broadcast handle
code inside a synchronized block to remove redundant partitioning
by the CP or the new early-broadcast thread.
Moreover, this patch fixes a bug in broadcast count stat collection.
Closes #1393 |
49,738 | 19.09.2021 22:48:09 | -7,200 | f80c238cf7a3e4b5baa9bee59f4320b4b3e5a366 | [MINOR] Fix robustness sparsity-related component tests | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/MatrixBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/MatrixBlock.java",
"diff": "@@ -1191,7 +1191,7 @@ public class MatrixBlock extends MatrixValue implements CacheBlock, External... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix robustness sparsity-related component tests |
49,706 | 25.09.2021 22:16:23 | -7,200 | 39e8f31e1b5a5bf4c164dfe09e07b6416880761a | [MINOR] Add spark checkpoint dir for local execution | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/SparkExecutionContext.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/SparkExecutionContext.java",
"diff": "@@ -224,6 +224,9 @@ public class SparkExecutionContext e... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add spark checkpoint dir for local execution |
49,720 | 27.09.2021 10:41:40 | -7,200 | 96733360c8f600355d5600f2edb8960ba1d47861 | [MINOR] Cleanups in cleaning pipelines (validation conditions, typos etc.)
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/executePipeline.dml",
"new_path": "scripts/builtin/executePipeline.dml",
"diff": "@@ -199,7 +199,7 @@ return (Matrix[Double] X)\nnX = nX[, 1: ncol(nX) - 1]\n}\n- if(dataFlag == 0 & (sum(mask) > 0))\n+ if(dataFlag == 0 & (sum(mask) > 0) & (sum(m... | Java | Apache License 2.0 | apache/systemds | [MINOR] Cleanups in cleaning pipelines (validation conditions, typos etc.)
Closes #1396. |
49,720 | 04.10.2021 14:24:21 | -7,200 | ee035ec47cbeacb926acda8f941ecd8f3aaf57f3 | [MINOR] Fixes in cleaning pipelines
- fix schema issues in getDirtyScore() method
- fix issues in utils::gridSearch when optimizing for non-binary data
- fix a minor bug in regular expression of detectSchemaFromRow as the existing
RE was identifying "123-456" as a double value | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/applyAndEvaluate.dml",
"new_path": "scripts/builtin/applyAndEvaluate.dml",
"diff": "@@ -136,7 +136,13 @@ getDirtyScore = function(Frame[Unknown] X, Matrix[Double] Y, Frame[Unknown] Xtes\nMatrix[Double] evalFunHp)\nreturn(Double dirtyScore)\n{\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fixes in cleaning pipelines
- fix schema issues in getDirtyScore() method
- fix issues in utils::gridSearch when optimizing for non-binary data
- fix a minor bug in regular expression of detectSchemaFromRow as the existing
RE was identifying "123-456" as a double value |
49,706 | 04.10.2021 15:33:15 | -7,200 | 72ccac70091630f70a7bd79d9b4ca524d49658a4 | [MINOR] Force search for our default configuration is none is specified
This commit is made to force the use of our default configuration if
none is specified, previously some executions would find our test
configurations, either for compression or for codeGen. | [
{
"change_type": "MODIFY",
"old_path": "bin/systemds",
"new_path": "bin/systemds",
"diff": "@@ -319,7 +319,7 @@ if [[ \"$*\" == *-config* ]]; then\nfi\nelif [ -z \"$CONFIG_FILE\" ] ; then\n# same as above: set config file param if the file exists\n- CONFIG_FILE=$(ordered_find \"SystemDS*config*.xml\... | Java | Apache License 2.0 | apache/systemds | [MINOR] Force search for our default configuration is none is specified
This commit is made to force the use of our default configuration if
none is specified, previously some executions would find our test
configurations, either for compression or for codeGen. |
49,722 | 01.10.2021 17:15:42 | -7,200 | 6e00b6912df94d64461be668958833b1cbdcfcdc | [MINOR] Modified federated BinarySPInstruction handling
This change slightly modifies the handling of BinarySPInstruction in FEDInstructionUtils.checkAndReplaceSP(...).
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/FEDInstructionUtils.java",
"new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/FEDInstructionUtils.java",
"diff": "@@ -69,6 +69,7 @@ import org.apache.sysds.runtime.instructions.spark.Bin... | Java | Apache License 2.0 | apache/systemds | [MINOR] Modified federated BinarySPInstruction handling
This change slightly modifies the handling of BinarySPInstruction in FEDInstructionUtils.checkAndReplaceSP(...).
Closes #1408. |
49,700 | 06.10.2021 16:41:38 | -7,200 | cba31ad00f66dc8b3a71a679241621eafc2f8e91 | [DOC] [MINOR] Update Codestyle File Path
Closes | [
{
"change_type": "MODIFY",
"old_path": "CONTRIBUTING.md",
"new_path": "CONTRIBUTING.md",
"diff": "@@ -46,7 +46,7 @@ let's make sure the changes are consistent with the guidelines and coding style.\nWe suggest applying a code formatter to the written code. Generally, this is done automatically.\n-We ... | Java | Apache License 2.0 | apache/systemds | [DOC] [MINOR] Update Codestyle File Path
Closes #1413. |
49,738 | 09.10.2021 16:25:03 | -7,200 | d6b7d1b82e18504e6c4463b332efa3e9c5ddf1f9 | [MINOR] Fix minor issues perftest suite (datagen, spark summit) | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "scripts/perftest/conf/log4j.properties",
"diff": "+#\n+# Licensed to the Apache Software Foundation (ASF) under one or more\n+# contributor license agreements. See the NOTICE file distributed with\n+# this work for additional information regardi... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix minor issues perftest suite (datagen, spark summit) |
49,738 | 09.10.2021 22:47:56 | -7,200 | 788a42d2e6c0b9880eb85aeacc46a5a996a76653 | [MINOR] Additional fixes perftest (algorithms location, datagen) | [
{
"change_type": "MODIFY",
"old_path": "scripts/perftest/runAll.sh",
"new_path": "scripts/perftest/runAll.sh",
"diff": "@@ -37,19 +37,23 @@ CMD=\"./sparkDML.sh\"\n# . ~/intel/oneapi/setvars.sh intel64\n# . /opt/intel/bin/compilervars.sh intel64\n-\n### Micro Benchmarks:\n#./MatrixMult.sh\n#./MatrixT... | Java | Apache License 2.0 | apache/systemds | [MINOR] Additional fixes perftest (algorithms location, datagen) |
49,738 | 10.10.2021 21:42:48 | -7,200 | 2ab37aeedcad490085dabde88c10948fb76fa95c | Add missing glmPredict builtin function
This patch adds the missing glmPredict builtin function (by conversion
from the existing algorithm script), adds a test, and changes the
perftest scripts accordingly. | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "scripts/builtin/glmPredict.dml",
"diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# dist... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3155] Add missing glmPredict builtin function
This patch adds the missing glmPredict builtin function (by conversion
from the existing algorithm script), adds a test, and changes the
perftest scripts accordingly. |
49,706 | 19.10.2021 01:37:31 | -7,200 | 797c0e4a1e557f63bf2b902955077dd3ef01a59b | [MINOR] Change github actions tests runner memory allocation | [
{
"change_type": "MODIFY",
"old_path": "docker/entrypoint.sh",
"new_path": "docker/entrypoint.sh",
"diff": "cd /github/workspace\n+export MAVEN_OPTS=\"-Xmx512m -XX:MaxPermSize=128m\"\n+\nlog=\"/tmp/sysdstest.log\"\nmvn -ntp test-compile 2>&1 | grep -E \"BUILD|Total time:|---|Building SystemDS\"\nmvn... | Java | Apache License 2.0 | apache/systemds | [MINOR] Change github actions tests runner memory allocation |
49,700 | 11.10.2021 18:30:28 | -7,200 | 2026cfff97fd992c75b6b56ac01d8d199f4f9db3 | Federated Reorg Operation FedOut Compilation
This commit ensures that Reorg operations rdiag and rev are compiled with the federated output flag FOUT/LOUT.
Additionally, it removes rshape and rsort from the FEDInstructionParser since the federated parsing of these
Reorg types are not supported yet.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.java",
"new_path": "src/main/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.java",
"diff": "@@ -252,7 +252,6 @@ public class IPAPassRewriteFederatedPlan extends IPAPass {\n... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3018] Federated Reorg Operation FedOut Compilation
This commit ensures that Reorg operations rdiag and rev are compiled with the federated output flag FOUT/LOUT.
Additionally, it removes rshape and rsort from the FEDInstructionParser since the federated parsing of these
Reorg types are not supported yet.
Closes #1414. |
49,700 | 05.10.2021 12:13:54 | -7,200 | 3e3c2d38de83d5545f614800a8f25056fc3f3132 | [MINOR] Adjust Details in Privacy Package
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/privacy/CheckedConstraintsLog.java",
"new_path": "src/main/java/org/apache/sysds/runtime/privacy/CheckedConstraintsLog.java",
"diff": "@@ -53,7 +53,7 @@ public class CheckedConstraintsLog {\n}\n/**\n- * Add an occurence o... | Java | Apache License 2.0 | apache/systemds | [MINOR] Adjust Details in Privacy Package
Closes #1411. |
49,720 | 08.10.2021 12:21:05 | -7,200 | 924a958343bb7d61cbf9d3c56f48ef76e7034fa9 | [MINOR] Various bug fixes in cleaning pipelines
- Fixing bugs in imputeByFd now returns null instead of zero for missing values
and is only applicable to categorical data
- adding validation checks in executePipeline.dml | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/executePipeline.dml",
"new_path": "scripts/builtin/executePipeline.dml",
"diff": "@@ -35,9 +35,9 @@ s_executePipeline = function(Frame[String] logical = as.frame(\"NULL\"), Frame[Str\nX = rbind(X, Xtest)\nY = rbind(Y, Ytest)\ntestRow = nrow(Xte... | Java | Apache License 2.0 | apache/systemds | [MINOR] Various bug fixes in cleaning pipelines
- Fixing bugs in imputeByFd now returns null instead of zero for missing values
and is only applicable to categorical data
- adding validation checks in executePipeline.dml |
49,689 | 25.10.2021 18:21:18 | -7,200 | 6e938bdbc6071bf6919640356428f6c05fd25033 | [maven-release-plugin] prepare release 2.2.0-rc1 | [
{
"change_type": "MODIFY",
"old_path": "pom.xml",
"new_path": "pom.xml",
"diff": "<version>18</version>\n</parent>\n<groupId>org.apache.systemds</groupId>\n- <version>2.2.0-SNAPSHOT</version>\n+ <version>2.2.0</version>\n<artifactId>systemds</artifactId>\n<packaging>jar</packaging>\n<name>SystemDS</... | Java | Apache License 2.0 | apache/systemds | [maven-release-plugin] prepare release 2.2.0-rc1 |
49,698 | 27.10.2021 12:00:34 | -19,080 | da7d315bee5b476834a346291e5f01403162d702 | [MINOR] Publish x.y.z-rc version to pypi.org | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/setup.py",
"new_path": "src/main/python/setup.py",
"diff": "@@ -48,7 +48,7 @@ java_dir_full_path = python_dir + '/' + java_dir\nsetup(\nname=ARTIFACT_NAME,\n- version=ARTIFACT_VERSION_SHORT,\n+ version=ARTIFACT_VERSION,\ndescription='SystemDS i... | Java | Apache License 2.0 | apache/systemds | [MINOR] Publish x.y.z-rc version to pypi.org (#1424) |
49,698 | 30.10.2021 22:25:10 | -19,080 | 275006e5611bb4fcb1d22f2d6b6c327433edd96b | Promote svn repo `dev/systemds/2.x-rc` to `release/systemds/2.x`
Closes | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "dev/release/svn-staging-to-release.sh",
"diff": "+#!/usr/bin/env bash\n+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements.... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3193] Promote svn repo `dev/systemds/2.x-rc` to `release/systemds/2.x`
Closes #1427. |
49,698 | 30.10.2021 23:48:10 | -19,080 | 30062f4a78e9e6f7a17c98ef8ff6e3c017291a66 | Do not run workflow for empty checks
* ignored paths are
- 'docs/**'
- '*.md'
- '*.html'
- 'src/main/python/docs/**'
- 'dev/**'
*
* | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/applicationTests.yml",
"new_path": ".github/workflows/applicationTests.yml",
"diff": "@@ -23,12 +23,21 @@ name: Application Test\non:\npush:\n+ paths-ignore:\n+ - 'docs/**'\n+ - '*.md'\n+ - '*.html'\n+ - 'src/main/python/docs/**'\n+ - 'dev/**... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3190] Do not run workflow for empty checks (#1426)
* ignored paths are
- 'docs/**'
- '*.md'
- '*.html'
- 'src/main/python/docs/**'
- 'dev/**'
--
* https://s.apache.org/systemds-3190-mail-discussion
* https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-ignoring-paths |
49,734 | 31.10.2021 20:08:34 | -3,600 | be4f9404a62b291e997ee5205db395d6ff1b2ae7 | Extended update in-place for unary operators
AMLS project SS2021.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/hops/OptimizerUtils.java",
"new_path": "src/main/java/org/apache/sysds/hops/OptimizerUtils.java",
"diff": "@@ -190,6 +190,14 @@ public class OptimizerUtils\n*/\npublic static boolean ALLOW_LOOP_UPDATE_IN_PLACE = true;\n+ /**\n+ *... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-2836] Extended update in-place for unary operators
AMLS project SS2021.
Closes #1406.
Co-authored-by: Maximilian Theiner <maximilian.theiner@student.tugraz.at>
Co-authored-by: Alexander Kropiunig <alexander.kropiunig@student.tugraz.at>
Co-authored-by: Matthias Boehm <mboehm7@gmail.com> |
49,698 | 01.11.2021 19:31:30 | -19,080 | 99984eb1b9c1117d57524d7c3b9633d5698114c2 | [MINOR] Remove federated python test badge in readme | [
{
"change_type": "MODIFY",
"old_path": "README.md",
"new_path": "README.md",
"diff": "@@ -45,4 +45,3 @@ To build from source visit [SystemDS Install from source](https://apache.github.\n[![Application Test](https://github.com/apache/systemds/workflows/Application%20Test/badge.svg?branch=main&event=p... | Java | Apache License 2.0 | apache/systemds | [MINOR] Remove federated python test badge in readme |
49,706 | 01.11.2021 16:36:19 | -3,600 | b6c16313b87026159ce9ec8ff9d2765b592faeca | [MINOR] Update github actions to use JAVA 11 | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/build.yml",
"new_path": ".github/workflows/build.yml",
"diff": "@@ -57,9 +57,10 @@ jobs:\nuses: actions/checkout@v2\n- name: Setup Java 11\n- uses: actions/setup-java@v1\n+ uses: actions/setup-java@v2\nwith:\n- java-version: 11\n+ distributio... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update github actions to use JAVA 11 |
49,706 | 01.11.2021 17:31:22 | -3,600 | 7ab4d7e1e765c1b4e6e429c760b7d337e4d1cde1 | [MINOR] Add build java versions to test | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/build.yml",
"new_path": ".github/workflows/build.yml",
"diff": "@@ -49,18 +49,20 @@ jobs:\nmatrix:\nos: [\nubuntu-latest,\n- # macOS-latest,\n+ macOS-latest,\nwindows-latest\n]\n+ java: ['1.8', '11', '16']\n+ javadist: ['adopt', 'adopt-openj9... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add build java versions to test |
49,706 | 01.11.2021 17:33:07 | -3,600 | f6509c3f99d32c931d484264879ce4ffed71ab23 | [MINOR] Update github actions to use new packages
This commit update the java, cache and python dependency to use
version 2 of each. This promise faster github actions.
Also contained in this commit, i updated the build to test MacOS. | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/applicationTests.yml",
"new_path": ".github/workflows/applicationTests.yml",
"diff": "@@ -42,19 +42,19 @@ on:\n- main\njobs:\n- applicationsTests:\n+ test:\n+ name: ${{ matrix.os }}\nruns-on: ${{ matrix.os }}\nstrategy:\nfail-fast: false\nmat... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update github actions to use new packages
This commit update the java, cache and python dependency to use
version 2 of each. This promise faster github actions.
Also contained in this commit, i updated the build to test MacOS. |
49,698 | 02.11.2021 16:08:01 | -19,080 | f505908577ab62626dfec203fe79f923b79f45c7 | [MINOR] Update docs to 2.3.0-SNAPSHOT | [
{
"change_type": "MODIFY",
"old_path": "docs/_config.yml",
"new_path": "docs/_config.yml",
"diff": "@@ -39,7 +39,7 @@ exclude:\n- updateAPI.sh\n# These allow the documentation to be updated with newer releases\n-SYSTEMDS_VERSION: 2.2.0-SNAPSHOT\n+SYSTEMDS_VERSION: 2.3.0-SNAPSHOT\n# if 'analytics_on'... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update docs to 2.3.0-SNAPSHOT (#1433) |
49,706 | 02.11.2021 13:22:54 | -3,600 | bc1e4388cb0100a26d15b9d56a86dcba7b3d0454 | Python federated tutorial test | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "src/main/python/docs/source/code/federatedTutorial_part1.py",
"diff": "+# -------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3195] Python federated tutorial test |
49,706 | 03.11.2021 12:06:37 | -3,600 | b1c5f7ed2606a6245fd581b6110ff1e03615a545 | [MINOR] Add check that metadata file exist
This commit adds a check that the metadata file exists before
checking if it is a dictionary. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/meta/MetaDataAll.java",
"new_path": "src/main/java/org/apache/sysds/runtime/meta/MetaDataAll.java",
"diff": "@@ -100,7 +100,7 @@ public class MetaDataAll extends DataIdentifier {\n{\nJSONObject retVal = new JSONObject();\... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add check that metadata file exist
This commit adds a check that the metadata file exists before
checking if it is a dictionary. |
49,706 | 03.11.2021 17:36:19 | -3,600 | 0f1b6f0afa3415e0da9bac10e8d932cc09f634a2 | [MINOR] Ignore Swap value tests since it fails | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"diff": "@@ -53,14 +53,16 @@ public class FrameValueSwapTest extends AutomatedTestBase\nadd... | Java | Apache License 2.0 | apache/systemds | [MINOR] Ignore Swap value tests since it fails |
49,698 | 04.11.2021 00:21:38 | -19,080 | cee68de6a8f46c318dc60c5e36c6e53a4eb3b77e | Update `org.apache` parent pom version to 24
* update parent pom to 24, and enable outputTimestamp
* resolve warning with inclusion filter about *:commons-httpclient*
[1]
[2]
[3] | [
{
"change_type": "MODIFY",
"old_path": "pom.xml",
"new_path": "pom.xml",
"diff": "<parent>\n<groupId>org.apache</groupId>\n<artifactId>apache</artifactId>\n- <version>18</version>\n+ <version>24</version>\n</parent>\n<groupId>org.apache.systemds</groupId>\n<version>2.3.0-SNAPSHOT</version>\n<scala.v... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3196] Update `org.apache` parent pom version to 24 (#1436)
* update parent pom to 24, and enable outputTimestamp
* resolve warning with inclusion filter about *:commons-httpclient*
[1] https://maven.apache.org/guides/mini/guide-reproducible-builds.html
[2] https://lists.apache.org/thread/9wk97dwjlcoxlk1onxotfo8k98b2v0sk
[3] https://github.com/apache/maven-apache-parent/compare/apache-18...apache-24#diff |
49,706 | 04.11.2021 10:27:58 | -3,600 | dffd69b40d12377a1d1024af4f425e20facadc0b | Python Federated Matrix Multiplication Tests | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "src/main/python/tests/federated/test_federated_matrix_mult.py",
"diff": "+# -------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreemen... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3198] Python Federated Matrix Multiplication Tests |
49,706 | 04.11.2021 14:29:55 | -3,600 | 456f4c3ff1adaa69f053a94b49165fe2aecd90bf | [MINOR] Ignore Fed full lineage reuse tests
Add ignore flag on fed lineage tests, since these fails after verification
of each step in federated instructions.
A bug report is added to Jira. | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/lineage/FedFullReuseTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/lineage/FedFullReuseTest.java",
"diff": "@@ -31,6 +31,7 @@ import org.apache.sysds.test.TestConfiguration;\nimport org.apac... | Java | Apache License 2.0 | apache/systemds | [MINOR] Ignore Fed full lineage reuse tests
Add ignore flag on fed lineage tests, since these fails after verification
of each step in federated instructions.
A bug report is added to Jira. |
49,698 | 04.11.2021 21:45:17 | -19,080 | 83dfa9c445035cb45302945335ebde6c6ed8371c | [MINOR] Python `SYSTEMDS_BIN` update for all the version types
Also, fixed twin upload command | [
{
"change_type": "MODIFY",
"old_path": "dev/release/pypi-upload.sh",
"new_path": "dev/release/pypi-upload.sh",
"diff": "@@ -86,7 +86,7 @@ python3 -m twine check dist/*\n# password: pypi-DU5y...\nif [[ $dry_run_flag != 1 ]]; then\n- python twine upload dist/*\n+ python -m twine upload dist/*\nelse\np... | Java | Apache License 2.0 | apache/systemds | [MINOR] Python `SYSTEMDS_BIN` update for all the version types (#1432)
Also, fixed twin upload command |
49,700 | 15.10.2021 12:14:57 | -7,200 | bcea57e767f90bf77cee90edf767b9ad73b86b28 | [MINOR] Federated Rewriter Function Fix
This commit edits federated rewriter to rewrite FunctionStatementBlocks.
Before this commit, the FunctionStatementBlocks were not rewritten since they are stored in StatementBlocks as FunctionOps. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.java",
"new_path": "src/main/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.java",
"diff": "@@ -24,6 +24,7 @@ import org.apache.sysds.hops.AggBinaryOp;\nimport org.apache.s... | Java | Apache License 2.0 | apache/systemds | [MINOR] Federated Rewriter Function Fix
This commit edits federated rewriter to rewrite FunctionStatementBlocks.
Before this commit, the FunctionStatementBlocks were not rewritten since they are stored in StatementBlocks as FunctionOps. |
49,700 | 27.10.2021 17:10:01 | -7,200 | 56b03de92ae6d6c883ea5b4ad1290661c95546b1 | Federated L2SVM Performance Test With Federated Compilation
This commit adds a performance test of federated L2SVM with and without federated compilation.
Execution time is written to the usual execution time result file and compilation times are written
to another result file in the same results folder.
Closes | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "scripts/perftest/fed/runL2SVMFed.sh",
"diff": "+#!/bin/bash\n+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the N... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3018] Federated L2SVM Performance Test With Federated Compilation
This commit adds a performance test of federated L2SVM with and without federated compilation.
Execution time is written to the usual execution time result file and compilation times are written
to another result file in the same results folder.
Closes #1425. |
49,722 | 22.09.2021 00:17:50 | -7,200 | 69d33589de1258ba68b3652dfb9a5884adea213e | Frame rm empty instruction
This commit adds the remove empty instruction to frame, this instruction
was previously only supported on matrices.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/parser/ParameterizedBuiltinFunctionExpression.java",
"new_path": "src/main/java/org/apache/sysds/parser/ParameterizedBuiltinFunctionExpression.java",
"diff": "@@ -584,7 +584,8 @@ public class ParameterizedBuiltinFunctionExpressio... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3143] Frame rm empty instruction
This commit adds the remove empty instruction to frame, this instruction
was previously only supported on matrices.
Closes #1397 |
49,706 | 05.11.2021 17:41:22 | -3,600 | 499648ec47d650f6c541b65d024bbf6689943944 | [MINOR] Increase federated startup time python tests | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/tests/federated/runFedTest.sh",
"new_path": "src/main/python/tests/federated/runFedTest.sh",
"diff": "@@ -45,7 +45,7 @@ systemds WORKER 8002 >$w2_Output 2>&1 &\nFed2=$!\nsystemds WORKER 8003 >$w3_Output 2>&1 &\nFed3=$!\n-echo \"Starting workers... | Java | Apache License 2.0 | apache/systemds | [MINOR] Increase federated startup time python tests |
49,706 | 05.11.2021 15:09:42 | -3,600 | 4434eeba465fecc6295d63a3f33ef47cfaa4f642 | Python slice selection of rows and cols
This commit adds slice arguments to python to allow slicing a
selection of rows or columns for both matrix and frame:
X = sds.from_numpy(a)
getCols 1 and 2:
b = X[:,[1,2]]
getRows 3,5
b = X[[3,5]]
This fits to the python numpy specification.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/operator/nodes/frame.py",
"new_path": "src/main/python/systemds/operator/nodes/frame.py",
"diff": "@@ -28,12 +28,12 @@ from typing import (TYPE_CHECKING, Dict, Iterable, Optional, Sequence, Tuple,\nimport numpy as np\nimport pandas as ... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3202] Python slice selection of rows and cols
This commit adds slice arguments to python to allow slicing a
selection of rows or columns for both matrix and frame:
X = sds.from_numpy(a)
getCols 1 and 2:
b = X[:,[1,2]]
getRows 3,5
b = X[[3,5]]
This fits to the python numpy specification.
Closes #1438 |
49,689 | 06.11.2021 15:00:10 | -3,600 | 9196234061b33541b9471ec6eb49af841c7ec20d | [MINOR] Add transformencode tuning parameters to config | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/conf/ConfigurationManager.java",
"new_path": "src/main/java/org/apache/sysds/conf/ConfigurationManager.java",
"diff": "@@ -175,6 +175,10 @@ public class ConfigurationManager\nreturn getDMLConfig().getBooleanValue(DMLConfig.PARALL... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add transformencode tuning parameters to config |
49,700 | 08.11.2021 12:44:38 | -3,600 | 5ed73681ddad939b526027395d017473ccc8a1f1 | [MINOR] Move IPAPassRewriteFederatedPlan to IPA Package
The IPAPassRewriteFederatedPlan is moved to the IPA package where it belongs.
Additionally, the code is auto-formatted.
Closes | [
{
"change_type": "MODIFY",
"old_path": "docs/api/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.html",
"new_path": "docs/api/java/org/apache/sysds/hops/rewrite/IPAPassRewriteFederatedPlan.html",
"diff": "@@ -103,7 +103,7 @@ var activeTableTab = \"activeTableTab\";\n<li><a href=\"../.... | Java | Apache License 2.0 | apache/systemds | [MINOR] Move IPAPassRewriteFederatedPlan to IPA Package
The IPAPassRewriteFederatedPlan is moved to the IPA package where it belongs.
Additionally, the code is auto-formatted.
Closes #1445. |
49,700 | 04.10.2021 17:26:09 | -7,200 | cf87232b298ab708b20d30cdfd42d5ba3c1366f9 | [MINOR] Remove Redundant Parameters and Initializers in ProgramBlocks
This commit has small adjustments to the ProgramBlock classes to remove redundant parameters and initializers.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ForProgramBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/ForProgramBlock.java",
"diff": "@@ -165,12 +165,12 @@ public class ForProgramBlock extends ProgramBlock\n}\n//execut... | Java | Apache License 2.0 | apache/systemds | [MINOR] Remove Redundant Parameters and Initializers in ProgramBlocks
This commit has small adjustments to the ProgramBlock classes to remove redundant parameters and initializers.
Closes #1410. |
49,720 | 08.11.2021 17:14:01 | -3,600 | 97e14f81bbfa440986e670216432afe67cc7c051 | Builtin for random under-sampling
- the builtin accepts matrix data with last column as labels and a ratio parameter
and randomly remove the tuples from the majority class | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "scripts/builtin/underSampling.dml",
"diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# d... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3209] Builtin for random under-sampling
- the builtin accepts matrix data with last column as labels and a ratio parameter
and randomly remove the tuples from the majority class |
49,689 | 09.11.2021 18:03:40 | -3,600 | 4930c3070e97ecf2ca0b8f115ccf9c424513649e | Move Prefetch threadpool to CommonThreadPool | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"new_path": "src/main/java/org/apache/sysds/api/DMLScript.java",
"diff": "@@ -67,13 +67,13 @@ import org.apache.sysds.runtime.controlprogram.federated.FederatedWorker;\nimport org.apache.sysds.runtime.control... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3212] Move Prefetch threadpool to CommonThreadPool |
49,720 | 10.11.2021 12:58:26 | -3,600 | 260372349d7bf7780d99abff6bda28cddf807d45 | [MINOR] Fixing failing tests in valueSwaps | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"diff": "@@ -26,7 +26,6 @@ import org.apache.sysds.test.AutomatedTestBase;\nimport org.apac... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fixing failing tests in valueSwaps |
49,706 | 15.11.2021 17:41:57 | -3,600 | 2c0b7f049f334d1eb91da10ba0291a27f8422334 | [MINOR] Python move python gitignore to python sub project
This commit moves the gitignore parts specific for python into
src/main/python/.gitignore
This is done because the subfolder is a project in itself,
and therefore the IDE is opened as such with no access to the main
gitignore. | [
{
"change_type": "MODIFY",
"old_path": ".gitignore",
"new_path": ".gitignore",
"diff": "@@ -41,19 +41,6 @@ buildNumber.properties\n.jekyll-cache/\n_site/\n-# Python artifacts\n-src/main/python/systemds/systemds-java/\n-src/main/python/systemds.egg-info/\n-src/main/python/build/\n-src/main/python/LIC... | Java | Apache License 2.0 | apache/systemds | [MINOR] Python move python gitignore to python sub project
This commit moves the gitignore parts specific for python into
src/main/python/.gitignore
This is done because the subfolder is a project in itself,
and therefore the IDE is opened as such with no access to the main
gitignore. |
49,706 | 15.11.2021 17:51:01 | -3,600 | ccabfbc5d04431784235cdadbe4ccb507812740e | [MINOR] Add java dependencies to BIN
This commit adds Java dependencies to the BIN release, these dependencies
are missing since we updated to java 11, and updated Hadoop and spark to
3+.
These are not dependencies that are missing in our previous releases. | [
{
"change_type": "MODIFY",
"old_path": "src/assembly/bin.xml",
"new_path": "src/assembly/bin.xml",
"diff": "<includes>\n<include>*:${artifactId}*</include>\n<include>*:avro*</include>\n+ <include>*:commons-beanutils*</include>\n<include>*:commons-cli*</include>\n<include>*:commons-collections*</incl... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add java dependencies to BIN
This commit adds Java dependencies to the BIN release, these dependencies
are missing since we updated to java 11, and updated Hadoop and spark to
3+.
These are not dependencies that are missing in our previous releases. |
49,706 | 15.11.2021 18:10:06 | -3,600 | 3c890048d997cbd03ca192f7dc2ea761214b0206 | [MINOR] Reduce automatic testing to not run if only python is changed | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/applicationTests.yml",
"new_path": ".github/workflows/applicationTests.yml",
"diff": "@@ -27,7 +27,7 @@ on:\n- 'docs/**'\n- '*.md'\n- '*.html'\n- - 'src/main/python/docs/**'\n+ - 'src/main/python/**'\n- 'dev/**'\nbranches:\n- main\n@@ -36,7 +... | Java | Apache License 2.0 | apache/systemds | [MINOR] Reduce automatic testing to not run if only python is changed |
49,706 | 15.11.2021 19:12:24 | -3,600 | 3f5e701e84cdfb7dc386266b337aded0754a117c | [MINOR] Cleanup and update python tests | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/operator/nodes/list.py",
"new_path": "src/main/python/systemds/operator/nodes/list.py",
"diff": "@@ -80,7 +80,7 @@ class List(OperationNode):\nunnamed_input_vars, named_input_vars)\nreturn f'{var_name}={self.operation}({inputs_comma_se... | Java | Apache License 2.0 | apache/systemds | [MINOR] Cleanup and update python tests |
49,706 | 15.11.2021 19:17:24 | -3,600 | dd58caac3d2258a6e5de7c55bcfdcf0b8ec027a2 | [MINOR] Throw exception along in IO NoClassDefFoundError
This commit adds the exception of the class missing in the IO exception.
I had issues finding the library missing because this exception was
caught but not passing on the underlying exception | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/io/IOUtilFunctions.java",
"new_path": "src/main/java/org/apache/sysds/runtime/io/IOUtilFunctions.java",
"diff": "@@ -93,7 +93,7 @@ public class IOUtilFunctions\ntry{\nreturn FileSystem.get(conf);\n} catch(NoClassDefFoundE... | Java | Apache License 2.0 | apache/systemds | [MINOR] Throw exception along in IO NoClassDefFoundError
This commit adds the exception of the class missing in the IO exception.
I had issues finding the library missing because this exception was
caught but not passing on the underlying exception |
49,693 | 11.11.2021 18:23:57 | -3,600 | e71f88beca9e76a97d0651ff7fefaf949633a20a | [MINOR] Run script bug fixes:
* Move the setting of SYSTEMDS_ROOT before its first use
* Search for a config xml file name that is actually included in the bin release
Closes | [
{
"change_type": "MODIFY",
"old_path": "bin/systemds",
"new_path": "bin/systemds",
"diff": "@@ -55,6 +55,14 @@ print_out()\nfi\n}\n+if [[ -z $SYSTEMDS_ROOT ]] ; then\n+ SYSTEMDS_ROOT=.\n+ print_out \"SYSTEMDS_ROOT not set defaulting to current dir $(pwd)\"\n+else\n+ # construct a relative path\n+ SY... | Java | Apache License 2.0 | apache/systemds | [MINOR] Run script bug fixes:
* Move the setting of SYSTEMDS_ROOT before its first use
* Search for a config xml file name that is actually included in the bin release
Closes #1456 |
49,706 | 16.11.2021 11:26:10 | -3,600 | aac57e539ad991cf3aa9616dcc1451fbfb2126bb | [MINOR] Fix deprecated rule based assertion of exception in CountDistinctTest | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/component/matrix/CountDistinctTest.java",
"new_path": "src/test/java/org/apache/sysds/test/component/matrix/CountDistinctTest.java",
"diff": "package org.apache.sysds.test.component.matrix;\n+import static org.junit.Assert.a... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix deprecated rule based assertion of exception in CountDistinctTest |
49,706 | 16.11.2021 11:28:56 | -3,600 | 3f6a0bb9754575e5e2ca65fe8790b37a5a3063b2 | [MINOR] Remove unused import in FrameValueSwapTest | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"new_path": "src/test/java/org/apache/sysds/test/functions/frame/FrameValueSwapTest.java",
"diff": "@@ -21,7 +21,6 @@ package org.apache.sysds.test.functions.frame;\nimport org.apach... | Java | Apache License 2.0 | apache/systemds | [MINOR] Remove unused import in FrameValueSwapTest |
49,698 | 19.11.2021 01:08:58 | -19,080 | 3ae9944e5d8ab65a0d2801fa473b3382c030ab7f | [MINOR][DOC] Update committer ASF ID list link | [
{
"change_type": "MODIFY",
"old_path": "dev/release/release-utils.sh",
"new_path": "dev/release/release-utils.sh",
"diff": "@@ -215,7 +215,7 @@ get_release_info() {\n# Git configuration info\n# The ASF ID is obtained from\n- # https://people.apache.org/phonebook.html?unix=systemds\n+ # https://peopl... | Java | Apache License 2.0 | apache/systemds | [MINOR][DOC] Update committer ASF ID list link |
49,689 | 15.11.2021 22:20:01 | -3,600 | dd11429686281defc2987433085b96f3d89abad8 | Multi-threaded metadata collection for transformencode
This patch adds the initial multi-threaded getMetaData(). getMetaData
is not part of the transformencode task-graph for now.
Additionally, this patch fixes some typos. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java",
"new_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java",
"diff": "@@ -1076,9 +1076,9 @@ public class CompressedMatrixBlock extends MatrixBlock {\n}\ni... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3222] Multi-threaded metadata collection for transformencode
This patch adds the initial multi-threaded getMetaData(). getMetaData
is not part of the transformencode task-graph for now.
Additionally, this patch fixes some typos. |
49,706 | 19.11.2021 16:44:35 | -3,600 | 96add83f1d0aebfe1744a7c2fd014a2a603a9162 | Python functions with list arguments
This commit fixes a bug where the sourced functions would not
correctly build the scripts in cases where a list is an input to the
function defined in a sourced script.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/systemds/context/systemds_context.py",
"new_path": "src/main/python/systemds/context/systemds_context.py",
"diff": "@@ -64,8 +64,7 @@ class SystemDSContext(object):\nif process.poll() is None:\nself.__start_gateway(actual_port)\nelse:\n- self.e... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3223] Python functions with list arguments
This commit fixes a bug where the sourced functions would not
correctly build the scripts in cases where a list is an input to the
function defined in a sourced script.
Closes #1460 |
49,706 | 16.11.2021 17:29:07 | -3,600 | ce07e37231cecc2979e5e28c714fc1e19b612ef2 | [MINOR] Improve sparse matrix printing
This commit change the sparse printing to only print rows, that actually
contain values. Also included is a small test of unary operations on
dense, CSR, and MCSR.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/data/SparseBlockCSR.java",
"new_path": "src/main/java/org/apache/sysds/runtime/data/SparseBlockCSR.java",
"diff": "@@ -865,12 +865,15 @@ public class SparseBlockCSR extends SparseBlock\nsb.append(size());\nsb.append(\"\\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Improve sparse matrix printing
This commit change the sparse printing to only print rows, that actually
contain values. Also included is a small test of unary operations on
dense, CSR, and MCSR.
Closes #1458 |
49,706 | 21.11.2021 14:22:17 | -3,600 | 74264f69059b2271a4be951fe74188346db505d6 | [MINOR] Split function tests differently
This commit change the split of the function tests a bit to reduce the
testing time further.
Closes | [
{
"change_type": "MODIFY",
"old_path": ".github/workflows/functionsTests.yml",
"new_path": ".github/workflows/functionsTests.yml",
"diff": "@@ -50,7 +50,8 @@ jobs:\nmatrix:\ntests: [\n\"**.functions.a**.**,**.functions.binary.frame.**,**.functions.binary.matrix.**,**.functions.binary.scalar.**,**.fu... | Java | Apache License 2.0 | apache/systemds | [MINOR] Split function tests differently
This commit change the split of the function tests a bit to reduce the
testing time further.
Closes #1463 |
49,706 | 21.11.2021 13:04:37 | -3,600 | 293fca19ce1a5d076a55968693e29540d3658b6f | CLA spoof support
This commit fixes spoof support via decompressions, and not actual
compressed support. Previously there was spoof CLA tests hidden in the
codegen tests, but they did not verify if the matrix was compressed.
This is now moved to compression tests, and the compression instruction
is verified.
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/hops/rewrite/RewriteCompressedReblock.java",
"new_path": "src/main/java/org/apache/sysds/hops/rewrite/RewriteCompressedReblock.java",
"diff": "@@ -128,11 +128,13 @@ public class RewriteCompressedReblock extends StatementBlockRewr... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3225] CLA spoof support
This commit fixes spoof support via decompressions, and not actual
compressed support. Previously there was spoof CLA tests hidden in the
codegen tests, but they did not verify if the matrix was compressed.
This is now moved to compression tests, and the compression instruction
is verified.
Closes #1462 |
49,706 | 24.11.2021 12:50:32 | -3,600 | 5c6f88b894eba4f3c7a2d4a7ebecea58381e527c | [DOCS] Python include end to end tutorial | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/docs/source/guide/python_end_to_end_tut.rst",
"new_path": "src/main/python/docs/source/guide/python_end_to_end_tut.rst",
"diff": "@@ -177,7 +177,7 @@ adding column names at the top of the files such that the first line looks like:\nage,workclas... | Java | Apache License 2.0 | apache/systemds | [DOCS] Python include end to end tutorial |
49,698 | 24.11.2021 22:15:42 | -19,080 | 9a53d3be8e9b471bd04df106a2fc1ab5a6d81080 | [MINOR] Silence mvn package download info | [
{
"change_type": "MODIFY",
"old_path": "docker/pythonsysds.Dockerfile",
"new_path": "docker/pythonsysds.Dockerfile",
"diff": "@@ -50,7 +50,7 @@ RUN apt-get update -qq \\\n&& mv apache-maven-$MAVEN_VERSION /usr/lib/mvn \\\n&& git clone --depth 1 https://github.com/apache/systemds.git systemds && \\\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Silence mvn package download info (#1465) |
49,698 | 25.11.2021 18:54:10 | -19,080 | 39f0a32fd3eda4da9c8c0cfb88b440043ba84d5a | [MINOR] Reverse last for the tests to pass | [
{
"change_type": "MODIFY",
"old_path": "docker/pythonsysds.Dockerfile",
"new_path": "docker/pythonsysds.Dockerfile",
"diff": "@@ -50,7 +50,7 @@ RUN apt-get update -qq \\\n&& mv apache-maven-$MAVEN_VERSION /usr/lib/mvn \\\n&& git clone --depth 1 https://github.com/apache/systemds.git systemds && \\\n... | Java | Apache License 2.0 | apache/systemds | [MINOR] Reverse last #1465 for the tests to pass (#1466) |
49,693 | 11.06.2021 14:06:24 | -7,200 | b112b2879876f9a878df3e268697cbe6a7ce3597 | Initial GPU junit tests
This commit is part of the GPU test suite epic and introduces:
* the gpu test java package
* tests for cellwise/rowwise codegen
* test for unary builtin functions (incomplete) | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "src/test/java/org/apache/sysds/test/gpu/BuiltinUnaryGPUInstructionTest.java",
"diff": "+/*\n+ * Licensed to the Apache Software Foundation (ASF) under one\n+ * or more contributor license agreements. See the NOTICE file\n+ * distributed with thi... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3020] Initial GPU junit tests
This commit is part of the GPU test suite epic [SYSTEMDS-3019] and introduces:
* the gpu test java package
* tests for cellwise/rowwise codegen
* test for unary builtin functions (incomplete) |
49,698 | 29.11.2021 02:05:58 | -19,080 | 0b977d72a21d9c6f7d43f7e9a9c63f4d75553de9 | [MINOR] Fix imports in BuiltinUnaryGPUInstructionTest
for | [
{
"change_type": "MODIFY",
"old_path": "src/test/java/org/apache/sysds/test/gpu/BuiltinUnaryGPUInstructionTest.java",
"new_path": "src/test/java/org/apache/sysds/test/gpu/BuiltinUnaryGPUInstructionTest.java",
"diff": "package org.apache.sysds.test.gpu;\nimport org.apache.sysds.test.AutomatedTestBase... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix imports in BuiltinUnaryGPUInstructionTest (#1467)
for b112b2879876f9a878df3e268697cbe6a7ce3597 |
49,686 | 01.12.2021 09:02:19 | -3,600 | fbed9dc38cccc29745e1756e6a26d9a556cdb236 | [MINOR][DOC] Update Multiple Federated Environments Example Result
Closes | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/docs/source/guide/federated.rst",
"new_path": "src/main/python/docs/source/guide/federated.rst",
"diff": "@@ -89,9 +89,9 @@ The print should look like\n.. code-block::\n- [[ 1. 4. 9. 1. 4. 9.]\n- [16. 25. 36. 16. 25. 36.]\n- [49. 64. 81. 49. 64... | Java | Apache License 2.0 | apache/systemds | [MINOR][DOC] Update Multiple Federated Environments Example Result
Closes #1469. |
49,706 | 01.12.2021 11:38:30 | -3,600 | bb155bc385110d50b46b74ef149e44d3e0d70b59 | [MINOR] Add error message log in case of incorrect paramserv functions | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/hops/rewrite/HopRewriteUtils.java",
"new_path": "src/main/java/org/apache/sysds/hops/rewrite/HopRewriteUtils.java",
"diff": "package org.apache.sysds.hops.rewrite;\nimport org.apache.commons.lang.ArrayUtils;\n+import org.apache.c... | Java | Apache License 2.0 | apache/systemds | [MINOR] Add error message log in case of incorrect paramserv functions |
49,698 | 02.12.2021 00:04:58 | -19,080 | e1676dc920502f56619ccf5c5849089eb0c16088 | [MINOR] Remove GA from the docs configuration | [
{
"change_type": "MODIFY",
"old_path": "docs/_config.yml",
"new_path": "docs/_config.yml",
"diff": "@@ -41,7 +41,3 @@ exclude:\n# These allow the documentation to be updated with newer releases\nSYSTEMDS_VERSION: 2.3.0-SNAPSHOT\n-# if 'analytics_on' is true, analytics section will be rendered on the... | Java | Apache License 2.0 | apache/systemds | [MINOR] Remove GA from the docs configuration |
49,698 | 02.12.2021 21:36:36 | -19,080 | c038d6fbadf6045e12834b97d2bb14f502614781 | [MINOR] Update Python version info to x.y.z-dev in pypi-upload script
as per the version scheme introduced in commit
Closes | [
{
"change_type": "MODIFY",
"old_path": "dev/release/pypi-upload.sh",
"new_path": "dev/release/pypi-upload.sh",
"diff": "@@ -61,8 +61,8 @@ printf \"Is this RC voted and approved by PMC? [Yes/No]: \\n\"\n# Docs: https://www.gnu.org/software/bash/manual/bash.html#index-case\nselect yn in \"Yes\" \"No\"... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update Python version info to x.y.z-dev in pypi-upload script
as per the version scheme introduced in commit https://github.com/apache/systemds/commit/2c90f9e7009d766ed0cb887d4f319c54c322e410
Closes #1470. |
49,706 | 03.12.2021 14:35:26 | -3,600 | f4d9c2af97a6e2d1ea205d63d83e7734ae3d0edd | [MINOR] Set default gmmPredict model type
Also build python gmm based on it. | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/gmmPredict.dml",
"new_path": "scripts/builtin/gmmPredict.dml",
"diff": "# compute posterior probabilities for new instances given the variance and mean of fitted data\nm_gmmPredict = function(Matrix[Double] X, Matrix[Double] weight,\n- Matrix[D... | Java | Apache License 2.0 | apache/systemds | [MINOR] Set default gmmPredict model type
Also build python gmm based on it. |
49,706 | 03.12.2021 15:09:45 | -3,600 | 8abaafd10d3569f0165a7b85424caf2e80ea4bf5 | [MINOR] python add error if building with multiple bin files | [
{
"change_type": "MODIFY",
"old_path": "src/main/python/pre_setup.py",
"new_path": "src/main/python/pre_setup.py",
"diff": "@@ -43,9 +43,19 @@ LIB_DIR = os.path.join(this_path, PYTHON_DIR, 'lib')\nif os.path.exists(LIB_DIR):\nshutil.rmtree(LIB_DIR, True)\nSYSTEMDS_BIN = 'systemds-*-bin.zip'\n+found_... | Java | Apache License 2.0 | apache/systemds | [MINOR] python add error if building with multiple bin files |
49,689 | 03.12.2021 16:19:55 | -3,600 | 3764784f5d2ca7098fbde4f85bef4ff3244e1b64 | Cache-friendly Apply phase for dense target matrix
This patch adds loop-tiling logic to the apply phase of transformencode
to exploit CPU caches. Currently, the changes are limited to dense
matrices.
Loop-tiling shows 2x performance improvement in recoding a frame
having 5M rows, 100 columens (100K unique in each) and w/ 32 threads. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/transform/encode/ColumnEncoder.java",
"new_path": "src/main/java/org/apache/sysds/runtime/transform/encode/ColumnEncoder.java",
"diff": "@@ -116,6 +116,8 @@ public abstract class ColumnEncoder implements Encoder, Comparab... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3236] Cache-friendly Apply phase for dense target matrix
This patch adds loop-tiling logic to the apply phase of transformencode
to exploit CPU caches. Currently, the changes are limited to dense
matrices.
Loop-tiling shows 2x performance improvement in recoding a frame
having 5M rows, 100 columens (100K unique in each) and w/ 32 threads. |
49,689 | 04.12.2021 20:45:23 | -3,600 | 9c1a4fd29cd763c0bc6482abcb1f8e2ae4800ac6 | Cache-friendly Apply phase for sparse target matrix
This patch extends the loop-tiling logic for the apply phases
to sparse matrices as well. | [
{
"change_type": "MODIFY",
"old_path": "src/main/java/org/apache/sysds/runtime/transform/encode/ColumnEncoder.java",
"new_path": "src/main/java/org/apache/sysds/runtime/transform/encode/ColumnEncoder.java",
"diff": "@@ -119,13 +119,29 @@ public abstract class ColumnEncoder implements Encoder, Compar... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3236] Cache-friendly Apply phase for sparse target matrix
This patch extends the loop-tiling logic for the apply phases
to sparse matrices as well. |
49,698 | 06.12.2021 07:26:21 | 0 | 3bff2b1c42a62631489721800cbe548f65f4c1c0 | [MINOR] Fix impute inputs for the testing
use `matrix(1,1,ncol(X))` as default `mask` input | [
{
"change_type": "MODIFY",
"old_path": "scripts/staging/sklearn/mappers/transformations.py",
"new_path": "scripts/staging/sklearn/mappers/transformations.py",
"diff": "@@ -61,7 +61,9 @@ class SimpleImputerMapper(Mapper):\nelse:\nself.name = 'imputeByMean'\n- self.mapped_params = []\n+ self.mapped_pa... | Java | Apache License 2.0 | apache/systemds | [MINOR] Fix impute inputs for the testing
use `matrix(1,1,ncol(X))` as default `mask` input |
49,698 | 06.12.2021 07:43:55 | 0 | f2d7641a95174f0265df416dc4ee6746e8c51116 | [MINOR] Update function signatures in unsupervised mapper | [
{
"change_type": "MODIFY",
"old_path": "scripts/staging/sklearn/mappers/unsupervised.py",
"new_path": "scripts/staging/sklearn/mappers/unsupervised.py",
"diff": "@@ -76,8 +76,10 @@ class GaussianMixtureMapper(Mapper):\nself.mapped_params = [\nself.params.get('n_components', 3),\nf'\"{self.model_map.... | Java | Apache License 2.0 | apache/systemds | [MINOR] Update function signatures in unsupervised mapper |
49,706 | 03.12.2021 16:03:17 | -3,600 | eee15cca444ab777d2955b624b8dd3073ba899c8 | Python GMM test
This commit adds a small GMM test in python for outlier/anomaly detection. | [
{
"change_type": "ADD",
"old_path": null,
"new_path": "src/main/python/tests/algorithms/test_gmm.py",
"diff": "+# -------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTIC... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3238] Python GMM test
This commit adds a small GMM test in python for outlier/anomaly detection. |
49,706 | 03.12.2021 17:37:56 | -3,600 | ed6460a7520bfc3a19d7c335e6a323f5c121813d | GMM parse seeding the Kmeans init
The GMM builtin did not parse the seed to the Kmeans initialization.
This commit fixes this.
Closes | [
{
"change_type": "MODIFY",
"old_path": "scripts/builtin/gmm.dml",
"new_path": "scripts/builtin/gmm.dml",
"diff": "@@ -114,7 +114,7 @@ return (Matrix[Double] weight, Matrix[Double] mean, Matrix[Double] sigma, Matrix\nresp = matrix(0, nrow(X), n_components)\nif(init_params == \"kmeans\") {\n[C, Y] = k... | Java | Apache License 2.0 | apache/systemds | [SYSTEMDS-3237] GMM parse seeding the Kmeans init
The GMM builtin did not parse the seed to the Kmeans initialization.
This commit fixes this.
Closes #1472 |
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