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49,693
24.02.2021 00:05:52
-3,600
510838a982b6d15e21aacd5328d6f140f1721513
[MINOR] fix jitify submodule config Closes
[ { "change_type": "MODIFY", "old_path": ".gitmodules", "new_path": ".gitmodules", "diff": "-[submodule \"jitify\"]\n+[submodule \"src/main/cuda/ext/jitify\"]\npath = src/main/cuda/ext/jitify\n- url = git@github.com:NVIDIA/jitify.git\n+ url = git@github.com:corepointer/jitify.git\n+ branch = win_compi...
Java
Apache License 2.0
apache/systemds
[MINOR] fix jitify submodule config Closes #1180
49,743
27.11.2020 18:15:52
-3,600
44e42945541150d7e870c5b89e79c085d63b4e78
Add Builtin Decision Tree DIA project WS2020/21 Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/decisionTree.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# di...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2870] Add Builtin Decision Tree DIA project WS2020/21 Closes #1145 Co-authored-by: David Egger <david.egger@student.tugraz.at> Co-authored-by: Adna Ribo <adna.ribo@hotmail.com>
49,693
25.02.2021 13:00:42
-3,600
3315eb62ab593f4526f307a6037a8d80109559db
[MINOR] Correcting a logic error while deciding to avoid execution on empty input in SpoofCUDACellwise
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/codegen/SpoofCUDACellwise.java", "new_path": "src/main/java/org/apache/sysds/runtime/codegen/SpoofCUDACellwise.java", "diff": "@@ -64,7 +64,6 @@ public class SpoofCUDACellwise extends SpoofCellwise implements SpoofCUDAOpe...
Java
Apache License 2.0
apache/systemds
[MINOR] Correcting a logic error while deciding to avoid execution on empty input in SpoofCUDACellwise
49,685
26.02.2021 10:24:37
-3,600
67ae9551f7bd62846e0b084c743018d4a0713ba2
Bayesian Optimization Algorithm DIA project WS2020/21 Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/staging/bayesian_optimization/bayesianOptimization.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreemen...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2872] Bayesian Optimization Algorithm DIA project WS2020/21 Closes #1155.
49,735
26.02.2021 12:44:42
-3,600
a90022639d1d39bfd35abce2f0aeb0c53b1bbd00
Built-in CorrectTypos The function fixes the spelling errors by replacing them with similar frequent value in the column. DIA project WS2020/21 Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/common/Builtins.java", "new_path": "src/main/java/org/apache/sysds/common/Builtins.java", "diff": "@@ -86,6 +86,7 @@ public enum Builtins {\nCONV2D(\"conv2d\", false),\nCONV2D_BACKWARD_FILTER(\"conv2d_backward_filter\", false),\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2873] Built-in CorrectTypos The function fixes the spelling errors by replacing them with similar frequent value in the column. DIA project WS2020/21 Closes #1146. Co-authored-by: Tim Sagaster <tim.sagaster@student.tugraz.at>
49,706
26.02.2021 14:28:44
-3,600
47cd04191f16e582811a5637afede020b4b15111
Python API Autogenerator This commit makes the generator work if called from the python folder, as well as before from the root folder of the project.
[ { "change_type": "MODIFY", "old_path": "src/main/python/generator/generator.py", "new_path": "src/main/python/generator/generator.py", "diff": "@@ -29,21 +29,23 @@ from parser import FunctionParser\nclass PythonAPIFileGenerator(object):\ntarget_path = os.path.join(os.path.dirname(os.path.dirname(__f...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2871] Python API Autogenerator This commit makes the generator work if called from the python folder, as well as before from the root folder of the project.
49,722
11.01.2021 01:11:47
-3,600
8565b1db948fc7222e3227a84622c6714fa6e425
Federated covariance Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/BinaryFEDInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/BinaryFEDInstruction.java", "diff": "@@ -35,6 +35,11 @@ public abstract class BinaryFEDInstruction extends ...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2766] Federated covariance Closes #1150
49,722
25.02.2021 17:48:49
-7,200
96fc29434ff9877fbf170c09e58666d8040e6727
test encoder serialization Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "src/test/java/org/apache/sysds/test/functions/transform/EncoderSerializationTest.java", "diff": "+/*\n+ * Licensed to the Apache Software Foundation (ASF) under one\n+ * or more contributor license agreements. See the NOTICE file\n+ * distribute...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2878] test encoder serialization Closes #1192
49,689
28.02.2021 14:48:53
-3,600
68e5e298c73d1013c528d76c789dba77fd106eb8
Add test for a mini-batch scenario with dedup This patch fixes a bug in placeholder handling in lineage deuplication. In addition, it adds a test to reuse preprocessing in a mini-batch like scenario with deduplication.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/parser/WhileStatementBlock.java", "new_path": "src/main/java/org/apache/sysds/parser/WhileStatementBlock.java", "diff": "@@ -21,6 +21,7 @@ package org.apache.sysds.parser;\nimport java.util.ArrayList;\nimport java.util.HashMap;\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2583] Add test for a mini-batch scenario with dedup This patch fixes a bug in placeholder handling in lineage deuplication. In addition, it adds a test to reuse preprocessing in a mini-batch like scenario with deduplication.
49,706
01.03.2021 12:00:58
-3,600
4649eb1f0363f12cd8b7e11b328089b7e6dc956d
[MINOR] Scale apply use ifelse operation
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/scaleApply.dml", "new_path": "scripts/builtin/scaleApply.dml", "diff": "# NAME TYPE DEFAULT MEANING\n# ---------------------------------------------------------------------------------------------\n# X Matrix --- Input feature matrix\n-# ColMea...
Java
Apache License 2.0
apache/systemds
[MINOR] Scale apply use ifelse operation
49,696
01.03.2021 17:36:57
-3,600
b26c3d91ad7d3af791407f91a521bd344b3d0edb
TomekLink builtin function Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/tomeklink.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# distr...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2877] TomekLink builtin function Closes #1186
49,688
01.03.2021 18:46:28
-3,600
d4ba5028635ff2011b22828ad1e372d1811fab95
[MINOR] Fix null check in EncoderMVImpute for Global_Mean; Also: * Adapted test so NaN is checked * removed unnecessary import * adapted count for mean calculation Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/transform/encode/EncoderMVImpute.java", "new_path": "src/main/java/org/apache/sysds/runtime/transform/encode/EncoderMVImpute.java", "diff": "@@ -48,8 +48,7 @@ import org.apache.wink.json4j.JSONArray;\nimport org.apache.wi...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix null check in EncoderMVImpute for Global_Mean; Also: * Adapted test so NaN is checked * removed unnecessary import * adapted count for mean calculation Closes #1190
49,720
04.03.2021 15:22:11
-3,600
43ac8787b5693943c61b9afb116e37748df3def2
[MINOR] Removing print statement from commit
[ { "change_type": "MODIFY", "old_path": "src/test/java/org/apache/sysds/test/functions/transform/TokenizeTest.java", "new_path": "src/test/java/org/apache/sysds/test/functions/transform/TokenizeTest.java", "diff": "package org.apache.sysds.test.functions.transform;\nimport org.apache.sysds.api.DMLScr...
Java
Apache License 2.0
apache/systemds
[MINOR] Removing print statement from commit 8ef0d5a
49,693
08.03.2021 12:09:36
-3,600
f13bf1bbd51d4a17202450c272e27798bf064ba4
[MINOR] Fix unused imports introduced in codegen
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/hops/codegen/SpoofCompiler.java", "new_path": "src/main/java/org/apache/sysds/hops/codegen/SpoofCompiler.java", "diff": "package org.apache.sysds.hops.codegen;\n-import java.io.File;\n-import java.io.IOException;\n-import java.ut...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix unused imports introduced in codegen
49,706
09.03.2021 10:38:55
-3,600
bc9880cc89e7424055303c4cbd4c70a65d3df0d0
[MINOR] l2svm predict builtin
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/l2svmPredict.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# di...
Java
Apache License 2.0
apache/systemds
[MINOR] l2svm predict builtin
49,706
09.03.2021 16:26:39
-3,600
de6574a943eb1fa513f655901f6cd48674676705
[MINOR] Repeat test argument in pom
[ { "change_type": "MODIFY", "old_path": "pom.xml", "new_path": "pom.xml", "diff": "<jcuda.version>10.2.0</jcuda.version>\n<!-->Testing settings<!-->\n<maven.test.skip>true</maven.test.skip>\n+ <rerun.failing.tests.count>2</rerun.failing.tests.count>\n<jacoco.skip>true</jacoco.skip>\n<automatedtestbas...
Java
Apache License 2.0
apache/systemds
[MINOR] Repeat test argument in pom
49,706
10.03.2021 12:30:22
-3,600
a3693f54de1c791947b3e8f56555f3b0a36056d7
[MINOR] CLA Unary contains NaN
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java", "new_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java", "diff": "@@ -854,11 +854,30 @@ public class CompressedMatrixBlock extends MatrixBlock {\n@Ove...
Java
Apache License 2.0
apache/systemds
[MINOR] CLA Unary contains NaN
49,752
11.03.2021 14:19:51
-3,600
c6c460d0a5000b14c698ff8ef9e013a6d78d162c
Builtin Gaussian Classifier - TODO: replace the looped implementation of covariance matrix into a vectorized builtin DIA project WS2020/21 Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/gaussianClassifier.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2891] Builtin Gaussian Classifier - TODO: replace the looped implementation of covariance matrix into a vectorized builtin DIA project WS2020/21 Closes #1153.
49,689
11.03.2021 19:12:33
-3,600
444df94ed8e990322e2a3a7a6fc7e3a0545b46da
Lineage tracing GPU instructions This patch extends lineage tracing for GPU instructions. This is the initial version and only a few operations are supported at this moment. Furthermore, this patch adds a test which tunes hyper-parameters for LM in GPU, recomputes the result from lineage in CPU and finally matches the results.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/AggregateBinaryGPUInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/AggregateBinaryGPUInstruction.java", "diff": "*/\npackage org.apache.sysds.runtime.instructions.gp...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2893] Lineage tracing GPU instructions This patch extends lineage tracing for GPU instructions. This is the initial version and only a few operations are supported at this moment. Furthermore, this patch adds a test which tunes hyper-parameters for LM in GPU, recomputes the result from lineage in CPU and finally matches the results.
49,705
11.03.2021 18:08:44
-3,600
4001ba6cf0a3615e0588dde63b6176f89eea2726
Builtin for Denial Constraints Validation DIA Project WS2020/21 Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/denialConstraints.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2895] Builtin for Denial Constraints Validation DIA Project WS2020/21 Closes #1188.
49,706
11.03.2021 12:41:27
-3,600
d575d3190e65cff72e50b5e42311552620c78278
Spark Log4j propagation This commit modify out bin/systemds to properly propagate our log4j settings to workers and controller in spark to allow control over the log output from spark execution in systemds.
[ { "change_type": "MODIFY", "old_path": "bin/systemds", "new_path": "bin/systemds", "diff": "@@ -246,6 +246,7 @@ if [ -z \"$LOG4JPROP\" ] ; then\nif [ -z \"${LOG4JPROP}\" ]; then\nLOG4JPROP=\"\"\nelse\n+ SPARK_LOG4J_PATH=\"$LOG4JPROP\"\nLOG4JPROP=\"-Dlog4j.configuration=file:$LOG4JPROP\"\nfi\nelse\n@...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2896] Spark Log4j propagation This commit modify out bin/systemds to properly propagate our log4j settings to workers and controller in spark to allow control over the log output from spark execution in systemds.
49,698
14.03.2021 11:08:05
-19,080
e3e57ba710cfec43b13d4c9e158e53299a9865be
[MINOR] add link to windows dev doc
[ { "change_type": "MODIFY", "old_path": "docs/site/install.md", "new_path": "docs/site/install.md", "diff": "@@ -29,7 +29,7 @@ This guide helps in the install and setup of SystemDS from source code.\n## Windows\n-TODO\n+[Developer Guide](https://github.com/apache/systemds/blob/master/dev/docs/windows...
Java
Apache License 2.0
apache/systemds
[MINOR] add link to windows dev doc
49,706
13.03.2021 11:00:01
-3,600
2bc40ed35e9be42e8442ca5227c61ec10220b7d4
CLA decompressing write
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java", "new_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlock.java", "diff": "@@ -205,32 +205,16 @@ public class CompressedMatrixBlock extends MatrixBlock {\n// p...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2897] CLA decompressing write
49,706
15.03.2021 17:38:24
-3,600
96ecdfae36056efd976c0870b27e517ea9e05c7b
[MINOR] Ignore PCA rewrite tests Closes
[ { "change_type": "MODIFY", "old_path": "src/test/java/org/apache/sysds/test/functions/codegenalg/partone/AlgorithmPCA.java", "new_path": "src/test/java/org/apache/sysds/test/functions/codegenalg/partone/AlgorithmPCA.java", "diff": "@@ -22,7 +22,6 @@ package org.apache.sysds.test.functions.codegenalg...
Java
Apache License 2.0
apache/systemds
[MINOR] Ignore PCA rewrite tests Closes #1201
49,720
17.03.2021 21:44:26
-3,600
2f3e3816635a0248f18dde6dea8594b8e27ca2ed
Minor built-ins for cleaning pipelines
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/imputeByMode.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# di...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2902] Minor built-ins for cleaning pipelines
49,720
17.03.2021 22:48:11
-3,600
797ab881507ad2389aa947430411e04256fc1801
[MINOR] Added support for categorical features in SMOTE
[ { "change_type": "MODIFY", "old_path": "src/test/java/org/apache/sysds/test/functions/builtin/BuiltinGaussianClassifierTest.java", "new_path": "src/test/java/org/apache/sysds/test/functions/builtin/BuiltinGaussianClassifierTest.java", "diff": "@@ -85,6 +85,7 @@ public class BuiltinGaussianClassifier...
Java
Apache License 2.0
apache/systemds
[MINOR] Added support for categorical features in SMOTE
49,706
24.03.2021 19:55:01
-3,600
8ba9016dcc5aee402861617f94b069cbc7992257
[MINOR] Fix native warning on sparse MM
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixNative.java", "new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixNative.java", "diff": "@@ -79,11 +79,12 @@ public class LibMatrixNative\nreturn;\n}\n- if( NativeHelper.isNativeL...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix native warning on sparse MM
49,689
25.03.2021 15:43:28
-3,600
b8bdfa8cef3563bd216615c4355a8c5ca097eeb9
Lineage-based reuse of GPU intermediates This patch brings the initial implementation of reuse of GPU memory pointers. This patch only enables reuse for AggregateBinaryGPU instructions. Minor code refactoring is needed to generally support reuse of all GPU operations.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/AggregateBinaryGPUInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/AggregateBinaryGPUInstruction.java", "diff": "@@ -41,7 +41,7 @@ import org.apache.sysds.utils.GPUS...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2913] Lineage-based reuse of GPU intermediates This patch brings the initial implementation of reuse of GPU memory pointers. This patch only enables reuse for AggregateBinaryGPU instructions. Minor code refactoring is needed to generally support reuse of all GPU operations.
49,693
25.03.2021 19:58:51
-3,600
9e6017351abb2090219b1a9c7394ad199965cfdc
Fixing GPU memory leak due to untracked GPUObjects that were used after removal.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "diff": "@@ -437,6 +437,10 @@ public abstract class CacheableData<T extends Cache...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2915] Fixing GPU memory leak due to untracked GPUObjects that were used after removal.
49,738
25.03.2021 22:53:46
-3,600
9c7a08dfdbec8a400a378e539dccf295087f7896
[MINOR] Cleanup repo (warnings, compression config, native libs)
[ { "change_type": "MODIFY", "old_path": "conf/SystemDS-config.xml.template", "new_path": "conf/SystemDS-config.xml.template", "diff": "<sysds.cp.parallel.io>true</sysds.cp.parallel.io>\n<!-- enables compressed linear algebra, experimental feature -->\n- <sysds.compressed.linalg>auto</sysds.compressed...
Java
Apache License 2.0
apache/systemds
[MINOR] Cleanup repo (warnings, compression config, native libs)
49,738
27.03.2021 01:37:52
-3,600
c20e540095f0af30770f5f4558e93a0641c81f67
[MINOR] Fix IPA function call graph (missing cleanup debug output)
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/hops/ipa/FunctionCallGraph.java", "new_path": "src/main/java/org/apache/sysds/hops/ipa/FunctionCallGraph.java", "diff": "@@ -472,7 +472,6 @@ public class FunctionCallGraph\nif( !fstack.contains(lfkey) ) {\nfstack.push(lfkey);\n_f...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix IPA function call graph (missing cleanup debug output)
49,738
27.03.2021 15:44:54
-3,600
0c21990bc059697be57ed31bfe884d95cbc131d9
Fix IPA list size propagation across DAGs
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/hops/recompile/Recompiler.java", "new_path": "src/main/java/org/apache/sysds/hops/recompile/Recompiler.java", "diff": "@@ -1418,12 +1418,13 @@ public class Recompiler\nelse if(HopRewriteUtils.isUnary(hop, OpOp1.CAST_AS_MATRIX)\n&...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2918] Fix IPA list size propagation across DAGs
49,693
28.03.2021 00:21:41
-3,600
28894797ff7992806268255b45b52a59717db6ae
Follow-up fix to original issue only call removeGPUObject if necessary
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java", "diff": "@@ -992,6 +992,7 @@ public class GPUObject {\nshadowBuffer.clearShadowPointe...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2915] Follow-up fix to original issue #2915: only call removeGPUObject if necessary
49,738
27.03.2021 21:16:26
-3,600
28a6fa5443f29d878f182817ed1ac5f77a6c502f
Extended multi-threading element-wise binary operations This patch makes some minor performance improvements, by now also supporting multi-threading for matrix-vector (not just matrix-matrix) binary element-wise, sparse-safe operations. Furthermore, this also includes a small specialized code path for axpy (+* and -*).
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/functionobjects/MinusMultiply.java", "new_path": "src/main/java/org/apache/sysds/runtime/functionobjects/MinusMultiply.java", "diff": "@@ -40,6 +40,10 @@ public class MinusMultiply extends TernaryValueFunction implements ...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2856] Extended multi-threading element-wise binary operations This patch makes some minor performance improvements, by now also supporting multi-threading for matrix-vector (not just matrix-matrix) binary element-wise, sparse-safe operations. Furthermore, this also includes a small specialized code path for axpy (+* and -*).
49,693
02.04.2021 13:26:45
-7,200
9566bdf109c154bac48d97df17619e2053a8f736
Fix in cloned GPUObject removal logic This is a 2nd follow-up fix to properly remove any references to GPUObjects that are to be removed.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUMemoryManager.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUMemoryManager.java", "diff": "@@ -449,8 +449,12 @@ public class GPUMemoryManager {\npublic v...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2915] Fix in cloned GPUObject removal logic This is a 2nd follow-up fix to properly remove any references to GPUObjects that are to be removed.
49,700
02.04.2021 16:23:29
-7,200
ff84032ff6160f06fdfac56ff82379e1e7b400d5
[MINOR] Close
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/TernaryFEDInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/TernaryFEDInstruction.java", "diff": "@@ -176,7 +176,14 @@ public class TernaryFEDInstruction extends Comp...
Java
Apache License 2.0
apache/systemds
[MINOR] Close #1193
49,738
03.04.2021 14:31:46
-7,200
1d9cf802b2bba705ee0ad29183f28b92387315fa
[MINOR] Updated documentation slicefinder builtin (ML model debugging)
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/slicefinder.dml", "new_path": "scripts/builtin/slicefinder.dml", "diff": "#\n#-------------------------------------------------------------\n+# This builtin function imlements SliceLine, a linear-algebra-based\n+# ML model debugging technique f...
Java
Apache License 2.0
apache/systemds
[MINOR] Updated documentation slicefinder builtin (ML model debugging) Co-authored-by: gilgenbergg <lanasvega@gmail.com>
49,698
11.04.2021 06:52:05
-19,080
0cf5125ab6fdc74abd07cfc9779ca4eba7890b69
[SYSTEMDS-2926][1/3] Update readme with administrative setup Closes
[ { "change_type": "MODIFY", "old_path": "scripts/aws/README.md", "new_path": "scripts/aws/README.md", "diff": "@@ -17,13 +17,113 @@ limitations under the License.\n{% endcomment %}\n-->\n-Instructions:\n+## Administrator setup\n-1. Create aws account / use your existing aws account\n-2. Install aws-c...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2926][1/3] Update readme with administrative setup Closes #1222.
49,720
10.04.2021 21:01:15
-7,200
549bf201dcf8de55680e06a705eb083887bf14ab
[MINOR] Minor fixes in cleaning pipelines (print statements, sample size)
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/bandit.dml", "new_path": "scripts/builtin/bandit.dml", "diff": "@@ -24,6 +24,7 @@ m_bandit = function(Matrix[Double] X_train, Matrix[Double] Y_train, List[Unknown\nFrame[Unknown] lp, Frame[Unknown] primitives, Frame[Unknown] param, Integer k = ...
Java
Apache License 2.0
apache/systemds
[MINOR] Minor fixes in cleaning pipelines (print statements, sample size)
49,706
12.04.2021 10:09:08
-7,200
a2da7905e38f2bd473a303ecba510440329b2745
[MINOR] Fix regression algorithms python The commit yesterday made the builtin auto generated __init__ file incorrect for executing the python api without the install from pip, this commit fixes this such that it works both if installed and if run from the src/main/python folder.
[ { "change_type": "MODIFY", "old_path": "src/main/python/generator/generator.py", "new_path": "src/main/python/generator/generator.py", "diff": "@@ -42,7 +42,7 @@ class PythonAPIFileGenerator(object):\ninit_path = os.path.join(os.path.dirname(os.path.dirname(\n__file__)), 'systemds', 'operator', 'alg...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix regression algorithms python The commit yesterday made the builtin auto generated __init__ file incorrect for executing the python api without the install from pip, this commit fixes this such that it works both if installed and if run from the src/main/python folder.
49,693
12.04.2021 23:06:32
-7,200
769f0e3db1646acdb7212bbe0c2275d69013a2c2
Fix incomplete cbind support in codegen row templates (CUDA) This patch is the CUDA version of the original bugfix (commit 1ec292a932c6e732bbac835a81cdb59371002114)
[ { "change_type": "MODIFY", "old_path": "src/main/cuda/headers/spoof_utils.cuh", "new_path": "src/main/cuda/headers/spoof_utils.cuh", "diff": "@@ -336,19 +336,31 @@ __device__ void vectDivAdd(T* a, T b, T* c, int ai, int ci, int len) {\nvectAdd_atomic<T, DivOp<T>>(a, b, c, ai, ci, len, op);\n}\n+temp...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2888] Fix incomplete cbind support in codegen row templates (CUDA) This patch is the CUDA version of the original bugfix (commit 1ec292a932c6e732bbac835a81cdb59371002114)
49,693
13.04.2021 00:35:06
-7,200
3faacace2cc766c1684d3818dba0aca5a9b7781c
[MINOR] Compilation issue with CUDA codegen's vectCountnnz() function fixed.
[ { "change_type": "MODIFY", "old_path": "src/main/cuda/headers/operators.cuh", "new_path": "src/main/cuda/headers/operators.cuh", "diff": "@@ -106,6 +106,17 @@ struct NotEqualOp {\n}\n};\n+template<typename T>\n+struct NotZero {\n+ __device__ __forceinline__ T operator()(T a, T b) const {\n+ return (...
Java
Apache License 2.0
apache/systemds
[MINOR] Compilation issue with CUDA codegen's vectCountnnz() function fixed.
49,706
14.04.2021 13:14:32
-7,200
14709cf5ac68f00508cff7e4d7a89d04c53f1acb
[MINOR] Catch exception on tearDown in component convert
[ { "change_type": "MODIFY", "old_path": "src/test/java/org/apache/sysds/test/component/convert/RDDConverterUtilsExtTest.java", "new_path": "src/test/java/org/apache/sysds/test/component/convert/RDDConverterUtilsExtTest.java", "diff": "@@ -24,6 +24,8 @@ import static org.junit.Assert.assertTrue;\nimpo...
Java
Apache License 2.0
apache/systemds
[MINOR] Catch exception on tearDown in component convert
49,693
14.04.2021 17:13:53
-7,200
6df1ea3c13613e122b4dad5742d2f6db4513f572
Remove function pointers from SPOOF CUDA's MatrixAccessor class The use of function pointers to abstract dense and sparse matrices is a major performance bottleneck. Relying on a conditional if sparse/dense for now. Also sets values per thread to 1 in cellwise template (better performance).
[ { "change_type": "MODIFY", "old_path": "src/main/cuda/headers/Matrix.h", "new_path": "src/main/cuda/headers/Matrix.h", "diff": "@@ -41,7 +41,6 @@ struct Matrix {\ncol_idx(reinterpret_cast<uint32_t*>((jvals[4]))), data(reinterpret_cast<T*>(jvals[5])) {}\n};\n-//#ifdef __CUDACC_RTC__\n#ifdef __CUDACC_...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2930] Remove function pointers from SPOOF CUDA's MatrixAccessor class The use of function pointers to abstract dense and sparse matrices is a major performance bottleneck. Relying on a conditional if sparse/dense for now. Also sets values per thread to 1 in cellwise template (better performance).
49,693
14.04.2021 23:59:51
-7,200
f10eb03821dbc30bcec731b2cc93125ec39ea3ff
[MINOR] Reduce memory footprint of reduceALL GPU operation The temporary buffer needs to hold at most num_blocks (of first reduction wave) items of size <data-type>, not N (size of input).
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixCUDA.java", "new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixCUDA.java", "diff": "@@ -933,10 +933,9 @@ public class LibMatrixCUDA {\nint[] tmp = getKernelParamsForReduceAll(gCt...
Java
Apache License 2.0
apache/systemds
[MINOR] Reduce memory footprint of reduceALL GPU operation The temporary buffer needs to hold at most num_blocks (of first reduction wave) items of size <data-type>, not N (size of input).
49,698
15.04.2021 04:50:18
-19,080
cd7772ae013255d6efa2de656fb4a01e1d3726f0
[MINOR] fix metadata for builtins-reference.md
[ { "change_type": "MODIFY", "old_path": "docs/_includes/header.html", "new_path": "docs/_includes/header.html", "diff": "@@ -46,6 +46,7 @@ limitations under the License.\n<li class=\"divider\"></li>\n<li><b>Language Guides:</b></li>\n<li><a href=\".{% if page.path contains 'site' %}/..{% endif %}/sit...
Java
Apache License 2.0
apache/systemds
[MINOR] fix metadata for builtins-reference.md
49,720
15.04.2021 16:44:38
-7,200
8dcb720136d048b1fe7027c4b87254f1a948276e
[MINOR] Row-wise frame initialization support Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/DataGenCPInstruction.java", "diff": "@@ -22,6 +22,7 @@ package org.apache.sysds.runtime.instructions.cp;\nimp...
Java
Apache License 2.0
apache/systemds
[MINOR] Row-wise frame initialization support Closes #1228.
49,706
15.04.2021 10:09:33
-7,200
c83d1ab6a7cd29dbbb907bb869b0a59e8a3570bb
[MINOR] Convert Component Test spark retry This commit tries to retry the spark creation and set random ports for the unstable component tests. Closes
[ { "change_type": "MODIFY", "old_path": "src/test/java/org/apache/sysds/test/component/convert/RDDConverterUtilsExtTest.java", "new_path": "src/test/java/org/apache/sysds/test/component/convert/RDDConverterUtilsExtTest.java", "diff": "@@ -59,7 +59,12 @@ public class RDDConverterUtilsExtTest extends A...
Java
Apache License 2.0
apache/systemds
[MINOR] Convert Component Test spark retry This commit tries to retry the spark creation and set random ports for the unstable component tests. Closes #1226
49,693
17.04.2021 00:42:53
-7,200
79011098016d5f35259edd2b204c313f1cd852c5
[MINOR][BUGFIX] Correctly counting device to host transfers if dense pointer was cleared along the way
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUObject.java", "diff": "@@ -935,7 +935,9 @@ public class GPUObject {\nmat.release();\nreturn;\n}\n-\...
Java
Apache License 2.0
apache/systemds
[MINOR][BUGFIX] Correctly counting device to host transfers if dense pointer was cleared along the way
49,698
15.04.2021 08:49:05
-19,080
1c210b8776fbf452a2e7496b0b81b214a106670b
[DOC] Add commit description guide * the philosophy behind the commit * tyes of commits with examples * commit tags used in the repository Closes
[ { "change_type": "MODIFY", "old_path": "CONTRIBUTING.md", "new_path": "CONTRIBUTING.md", "diff": "@@ -17,19 +17,17 @@ limitations under the License.\n{% end comment %}\n-->\n-# Contributing to SystemDS\n+# Contribution Guidelines and Standards for `SystemDS`\n-Thanks for taking the time to contribut...
Java
Apache License 2.0
apache/systemds
[DOC] Add commit description guide * the philosophy behind the commit * tyes of commits with examples * commit tags used in the repository Closes #1231.
49,706
21.04.2021 10:08:03
-7,200
18b705bb3a6bf7e19188163f1d73e0ee32d491a4
[MINOR] Surefire update to version 3.0.0-M5 This update is done because some tests sometimes crash with "The forked VM terminated without properly saying goodbye". This update seems to resolve this issue.
[ { "change_type": "MODIFY", "old_path": "pom.xml", "new_path": "pom.xml", "diff": "<plugin> <!-- unit tests -->\n<groupId>org.apache.maven.plugins</groupId>\n<artifactId>maven-surefire-plugin</artifactId>\n- <version>3.0.0-M4</version><!--$NO-MVN-MAN-VER$ -->\n+ <version>3.0.0-M5</version>\n<configur...
Java
Apache License 2.0
apache/systemds
[MINOR] Surefire update to version 3.0.0-M5 This update is done because some tests sometimes crash with "The forked VM terminated without properly saying goodbye". This update seems to resolve this issue.
49,698
20.04.2021 21:26:31
-19,080
728e009985a576929cc0bea1b3f01fec6b696664
Add .asf.yaml to control Github settings * Updates the GitHub project metadata - description, labels * Disables merge commit option, according to our commit style guide at CONTRIBUTING.md * .asf.yaml file provides expressive syntax to configure fine grained settings for hosting asf-site Closes
[ { "change_type": "ADD", "old_path": null, "new_path": ".asf.yaml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# distributed with this wor...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2910] Add .asf.yaml to control Github settings * Updates the GitHub project metadata - description, labels * Disables merge commit option, according to our commit style guide at CONTRIBUTING.md * .asf.yaml file provides expressive syntax to configure fine grained settings for hosting asf-site Closes #1233.
49,722
30.01.2021 16:00:47
-3,600
42f3b1594bba4f4f49316c9866912bb978e6dd8d
Federated ctable instruction Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/CtableFEDInstruction.java", "diff": "+/*\n+ * Licensed to the Apache Software Foundation (ASF) under one\n+ * or more contributor license agreements. See the NOTICE file\n+ * distributed wi...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2863] Federated ctable instruction Closes #1184
49,722
07.04.2021 00:51:10
-7,200
c07cd15ba100d4133548336e91082922bf160337
Federated left indexing Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/federated/FederationMap.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/federated/FederationMap.java", "diff": "@@ -40,6 +40,7 @@ import org.apache.sysds.runtime.controlprogram.fed...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2925] Federated left indexing Closes #1219
49,706
27.04.2021 21:03:10
-7,200
c2492d7c6ae6b46d69f5b543de428fb30b8311a8
[MINOR] Add missing unary support federated Add missing support for log and sigmoid for unary operations federated. This check is a basic copy of the CP Unary operations, but if it is possible to execute locally that unary operation should be possible federated.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/UnaryCPInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/UnaryCPInstruction.java", "diff": "@@ -62,9 +62,10 @@ public abstract class UnaryCPInstruction extends Computat...
Java
Apache License 2.0
apache/systemds
[MINOR] Add missing unary support federated Add missing support for log and sigmoid for unary operations federated. This check is a basic copy of the CP Unary operations, but if it is possible to execute locally that unary operation should be possible federated.
49,706
27.04.2021 15:39:01
-7,200
e5253fc6151dbb070a05369a4c38ff87edd7732c
logcosh loss function add new loss function to nn package called logcosh it is a loss function usually used in regression, calculating loss via: loss = log(cosh(pred - labels))
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/nn/layers/logcosh_loss.dml", "diff": "+#-------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# ...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2952] logcosh loss function add new loss function to nn package called logcosh it is a loss function usually used in regression, calculating loss via: loss = log(cosh(pred - labels))
49,720
27.04.2021 20:29:54
-7,200
4e7c63ec3ec6ac4c40e42001d680713d627e71d1
[MINOR] Few minor fixes (Warning and string comparison in FrameBlock and formatting fixes in FrameMapTest.java)
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java", "new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/FrameBlock.java", "diff": "@@ -785,7 +785,7 @@ public class FrameBlock implements CacheBlock, Externalizable {\n}\n@Override\n-...
Java
Apache License 2.0
apache/systemds
[MINOR] Few minor fixes (Warning and string comparison in FrameBlock and formatting fixes in FrameMapTest.java)
49,720
27.04.2021 22:17:04
-7,200
233f30d778249ea3b83010bb902da964d1955d43
[MINOR] Merging crossv.dml and frameRemoveEmpty.dml into utils.dml
[ { "change_type": "DELETE", "old_path": "scripts/pipelines/scripts/crossV.dml", "new_path": null, "diff": "-#-------------------------------------------------------------\n-#\n-# Licensed to the Apache Software Foundation (ASF) under one\n-# or more contributor license agreements. See the NOTICE file...
Java
Apache License 2.0
apache/systemds
[MINOR] Merging crossv.dml and frameRemoveEmpty.dml into utils.dml
49,738
27.04.2021 22:28:07
-7,200
4fc8691aa6b8cb986cc8457eeec4ab6e5ba6da1a
Fix federated binary matrix-vector operators This patch fixes a special case of federated matrix-vector operators with row/column vector broadcasting of 1x1 vectors and adds a related test. Furthermore, this also includes a cleanup for various warnings and a fix for correct federated csv read (using the new metadata handling).
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlockFactory.java", "new_path": "src/main/java/org/apache/sysds/runtime/compress/CompressedMatrixBlockFactory.java", "diff": "@@ -232,11 +232,11 @@ public class CompressedMatrixBlockFactory {\nlog...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2955] Fix federated binary matrix-vector operators This patch fixes a special case of federated matrix-vector operators with row/column vector broadcasting of 1x1 vectors and adds a related test. Furthermore, this also includes a cleanup for various warnings and a fix for correct federated csv read (using the new metadata handling).
49,706
28.04.2021 10:41:10
-7,200
d663d2d1e28d657382bf2ffc2209940d807ede65
[MINOR] fix bug introduced in
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixAgg.java", "new_path": "src/main/java/org/apache/sysds/runtime/matrix/data/LibMatrixAgg.java", "diff": "@@ -1143,7 +1143,7 @@ public class LibMatrixAgg\n}\nprivate static void aggregateBinaryMatrixLas...
Java
Apache License 2.0
apache/systemds
[MINOR] fix bug introduced in SYSTEMDS-2952
49,706
28.04.2021 13:04:39
-7,200
15c2e812d9c1c113bb05392ea4ab32e518b6e859
Cleanup Move homes data to resources folder. generate algorithms again, to fix merge issue.
[ { "change_type": "MODIFY", "old_path": "src/main/python/systemds/operator/algorithm/__init__.py", "new_path": "src/main/python/systemds/operator/algorithm/__init__.py", "diff": "@@ -41,6 +41,7 @@ from .builtin.dbscan import dbscan\nfrom .builtin.decisionTree import decisionTree\nfrom .builtin.discov...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2882] Cleanup - Move homes data to resources folder. - generate algorithms again, to fix merge issue.
49,706
28.04.2021 13:54:02
-7,200
60bd6d7b956bebeadc092cd55211114d19b565f7
[MINOR] Disable Hyperband test if SYSTEMDS_ROOT not set
[ { "change_type": "MODIFY", "old_path": "src/main/python/tests/frame/test_hyperband.py", "new_path": "src/main/python/tests/frame/test_hyperband.py", "diff": "@@ -57,6 +57,7 @@ class TestHyperband(unittest.TestCase):\npass\ndef test_hyperband(self):\n+ if \"SYSTEMDS_ROOT\" in os.environ:\nx_train = M...
Java
Apache License 2.0
apache/systemds
[MINOR] Disable Hyperband test if SYSTEMDS_ROOT not set
49,706
29.04.2021 21:01:33
-7,200
686798f35d2e255fa446f80a427c9417300365ba
[MINOR] systemds binary singlenode default
[ { "change_type": "MODIFY", "old_path": "bin/systemds", "new_path": "bin/systemds", "diff": "@@ -39,9 +39,9 @@ if [ -z \"$SYSDS_QUIET\" ]; then\nSYSDS_QUIET=0\nfi\n-# if not set by env, set to hybrid execution by default\n+# if not set by env, set to singlenode execution by default\nif [[ -z \"$SYSDS...
Java
Apache License 2.0
apache/systemds
[MINOR] systemds binary singlenode default
49,706
30.04.2021 12:10:13
-7,200
5b22c4246cb88d7e63e99d7e1a463a255c0bc666
[MINOR] Force ytest argument in lmPredict This is not the ideal solution, but just to make the test pass the LMPredict now require ytest argument, The reason i simply because the python generators does not like default parameters on matrice arguments yet.
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -824,7 +824,7 @@ The `lmPredict`-function predicts the class of a feature vector.\n### Usage\n```r\n-lmPredict(X=X, B=w)\n+lmPredict(X=X, B=w, ytest= Y)\n```\n### Argu...
Java
Apache License 2.0
apache/systemds
[MINOR] Force ytest argument in lmPredict This is not the ideal solution, but just to make the test pass the LMPredict now require ytest argument, The reason i simply because the python generators does not like default parameters on matrice arguments yet.
49,686
01.05.2021 21:12:17
-7,200
624a61229f9f744958faa310a9e80a86518b3c44
Add a predict function for Naive Bayes Closes
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -61,7 +61,8 @@ limitations under the License.\n* [`gnmf`-Function](#gnmf-function)\n* [`mdedup`-Function](#mdedup-function)\n* [`msvm`-Function](#msvm-function)\n- * [...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2959] Add a predict function for Naive Bayes Closes #1217
49,706
03.05.2021 12:22:02
-7,200
f15d5d7a3748aa82f3d6a64c56dd2c03392650d8
Docker Image from Ubuntu not R-base This change had to happen since the R-base images did not work correctly with installing all package parts. Now the image is based on ubuntu 20.04
[ { "change_type": "MODIFY", "old_path": "docker/testsysds.Dockerfile", "new_path": "docker/testsysds.Dockerfile", "diff": "#\n#-------------------------------------------------------------\n-# Use R official debian release\n-FROM r-base\n-\n-WORKDIR /usr/src/\n+FROM ubuntu:20.04\n# Install Maven\n# C...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2967] Docker Image from Ubuntu not R-base This change had to happen since the R-base images did not work correctly with installing all package parts. Now the image is based on ubuntu 20.04
49,698
04.05.2021 13:14:53
-19,080
e9a38a0cb160ec6ae8463a5bdf2e677887eb6b3e
DML recipes for inverse lower triangular matrix * Divide and conquer approach * This decomposition is used more generally will be used for building more complex algorithms Closes
[ { "change_type": "MODIFY", "old_path": "docs/site/dml-vs-r-guide.md", "new_path": "docs/site/dml-vs-r-guide.md", "diff": "@@ -209,3 +209,87 @@ C_indicator = table (index_C, PCV [, 1], max (index_C), nrow (C));\n# 5. Perform aggregation, here sum values per category\nsum_V_per_C = C_indicator %*% V\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2968] DML recipes for inverse lower triangular matrix * Divide and conquer approach * This decomposition is used more generally will be used for building more complex algorithms Closes #1252.
49,698
04.05.2021 13:29:18
-19,080
6807cca3c64682c88464aefb972e995a246871de
[MINOR][DOC] Fix latex format and header
[ { "change_type": "MODIFY", "old_path": "docs/_includes/header.html", "new_path": "docs/_includes/header.html", "diff": "@@ -47,6 +47,7 @@ limitations under the License.\n<li><b>Language Guides:</b></li>\n<li><a href=\".{% if page.path contains 'site' %}/..{% endif %}/site/dml-language-reference.html...
Java
Apache License 2.0
apache/systemds
[MINOR][DOC] Fix latex format and header
49,720
04.05.2021 11:16:40
-7,200
92cda3f811ccf0b1cbb326fa0f96fddf26a0d8e5
Initial implementation of Logical Pipelines optimizer Optimizer is based on evolutionary algorithm with constrained crossover and mutation this commit also contains some minor formatting cleanups in pipelines package Closes
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/bandit.dml", "new_path": "scripts/builtin/bandit.dml", "diff": "@@ -25,6 +25,7 @@ m_bandit = function(Matrix[Double] X_train, Matrix[Double] Y_train, List[Unknown\n{\nprint(\"Starting optimizer\")\nNUM_FEATURES = 14\n+ HYPERPARAM_LENGTH = 110\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2962] Initial implementation of Logical Pipelines optimizer Optimizer is based on evolutionary algorithm with constrained crossover and mutation this commit also contains some minor formatting cleanups in pipelines package Closes #1249.
49,722
12.04.2021 18:45:54
-7,200
c14198b75dcee7c77b4f68ca88807cb00d7ffe97
Federated rowProds, colProds Added fed col and row prod newlines and formatting Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/federated/FederationUtils.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/federated/FederationUtils.java", "diff": "@@ -203,6 +203,32 @@ public class FederationUtils {\n}\n}\n+ pub...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2542] Federated rowProds, colProds - Added fed col and row prod - newlines and formatting Closes #1248
49,706
04.05.2021 17:58:51
-7,200
5af203a001229a6f4608040ed7e558f59ffe937c
[MINOR] CLA add empty check Add a check for empty colum groups in case of only null columns in compression factory. Add edge case tests for empty and const colGroups Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/compress/colgroup/ColGroupCompressed.java", "new_path": "src/main/java/org/apache/sysds/runtime/compress/colgroup/ColGroupCompressed.java", "diff": "@@ -90,7 +90,9 @@ public abstract class ColGroupCompressed extends AColG...
Java
Apache License 2.0
apache/systemds
[MINOR] CLA add empty check - Add a check for empty colum groups in case of only null columns in compression factory. - Add edge case tests for empty and const colGroups Closes #1253
49,698
05.05.2021 22:06:10
-19,080
947ec2ab534f664662e94cd719ca3b12ef9f8337
Preliminary instruction to run an example spark job
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/staging/google-cloud/README.md", "diff": "+<!--\n+{% comment %}\n+Licensed to the Apache Software Foundation (ASF) under one or more\n+contributor license agreements. See the NOTICE file distributed with\n+this work for additional inform...
Java
Apache License 2.0
apache/systemds
Preliminary instruction to run an example spark job
49,698
05.05.2021 22:54:17
-19,080
c2d7f9b5df11cee71b551fbefa945265248f535f
Cluster resizing, ssh and tags usage
[ { "change_type": "MODIFY", "old_path": "scripts/staging/google-cloud/README.md", "new_path": "scripts/staging/google-cloud/README.md", "diff": "@@ -56,3 +56,67 @@ gcloud dataproc jobs submit spark --cluster ${CLUSTER_NAME} \\\n--class org.apache.spark.examples.SparkPi \\\n--jars file:///usr/lib/spar...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2971] Cluster resizing, ssh and tags usage
49,698
06.05.2021 01:55:25
-19,080
28da55fea4c8c1c45ba215ccb4fc29a7d4014025
[SYSTEMDS-2869][DOC] Built-in functions KNN and KNNBF
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -43,6 +43,7 @@ limitations under the License.\n* [`imputeByFD`-Function](#imputeByFD-function)\n* [`intersect`-Function](#intersect-function)\n* [`KMeans`-Function](#K...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2869][DOC] Built-in functions KNN and KNNBF (#1255)
49,698
07.05.2021 01:17:45
-19,080
95e8a2852e7084567cf08cda1df98fe83a9368f6
[SYSTEMDS-2891][DOC] Gaussian classifier builtin
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -34,6 +34,7 @@ limitations under the License.\n* [`dist`-Function](#dist-function)\n* [`dmv`-Function](#dmv-function)\n* [`ema`-Function](#ema-function)\n+ * [`gaussia...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2891][DOC] Gaussian classifier builtin (#1263)
49,698
07.05.2021 11:30:05
-19,080
caa0ca94ebb5d2f3504ba59fe44616a425ed11df
[SYSTEMDS-2842][DOC] cspline builtin doc cspline builtin has two modes CG, DS - correspondingly named as `csplineCG` and `csplineDS`.
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -28,6 +28,9 @@ limitations under the License.\n* [`tensor`-Function](#tensor-function)\n* [DML-Bodied Built-In functions](#dml-bodied-built-in-functions)\n* [`confusio...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2842][DOC] cspline builtin doc (#1265) cspline builtin has two modes CG, DS - correspondingly named as `csplineCG` and `csplineDS`.
49,698
08.05.2021 07:07:17
-19,080
1cfbfef9675ccad567b641e417d1829179a41cb6
[MINOR] Update spark runtime version in databricks notebook make sure setup instructions are up-to-date and relevant
[ { "change_type": "MODIFY", "old_path": "notebooks/databricks/MLContext.scala", "new_path": "notebooks/databricks/MLContext.scala", "diff": "+// Databricks notebook source\n/*\n* Licensed to the Apache Software Foundation (ASF) under one\n* or more contributor license agreements. See the NOTICE file\...
Java
Apache License 2.0
apache/systemds
[MINOR] Update spark runtime version in databricks notebook (#1267) make sure setup instructions are up-to-date and relevant
49,698
10.05.2021 05:09:40
-19,080
ee4b19c5497ae9c3cb58057ed4d948ecc12a5dc3
[MINOR] Add PTX JIT option instructions for sm_*
[ { "change_type": "MODIFY", "old_path": "docs/site/gpu.md", "new_path": "docs/site/gpu.md", "diff": "@@ -43,7 +43,16 @@ The following GPUs are supported:\nFor CUDA enabled gpu cards at [CUDA GPUs](https://developer.nvidia.com/cuda-gpus)\n* For GPUs with unsupported CUDA architectures, or to avoid JIT...
Java
Apache License 2.0
apache/systemds
[MINOR] Add PTX JIT option instructions for sm_*
49,738
12.05.2021 18:29:27
-7,200
070667d7793a5df47617bc72ec526f23662955d1
[MINOR] Fix local libsvm write (no output file in pread-pwrite case)
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/ParameterizedBuiltinCPInstruction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/cp/ParameterizedBuiltinCPInstruction.java", "diff": "@@ -341,7 +341,6 @@ public class Parameterized...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix local libsvm write (no output file in pread-pwrite case)
49,698
13.05.2021 16:58:51
-19,080
dadc15453d0de8956a1ac3097c2d47ae1f0547d2
[SYSTEMDS-2870][DOC] Builtin Decision Tree Reference commit:
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -33,6 +33,7 @@ limitations under the License.\n* [`csplineDS`-Function](#csplineDS-function)\n* [`cvlm`-Function](#cvlm-function)\n* [`DBSCAN`-Function](#DBSCAN-functi...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2870][DOC] Builtin Decision Tree (#1272) Reference commit: 44e42945
49,698
13.05.2021 18:42:22
-19,080
ccb6a96082f68e6fe6a907773fea37982c04b908
[MINOR][DOC] update preexisting java command to openjdk8
[ { "change_type": "MODIFY", "old_path": "docs/site/install.md", "new_path": "docs/site/install.md", "diff": "@@ -44,6 +44,11 @@ sudo apt install openjdk-8-jdk-headless\nsudo apt install maven\n```\n+Note: To update the `java` command to `openjdk-8` run:\n+```sh\n+update-alternatives --set java /usr/l...
Java
Apache License 2.0
apache/systemds
[MINOR][DOC] update preexisting java command to openjdk8 (#1273)
49,738
13.05.2021 15:35:20
-7,200
05b872ecb44a18499d53d63cfe157ef928501805
Support for namespaces in eval 2nd-order function calls So far, we only supported eval function calls of functions in default or builtin namespaces. This patch now extends that to all user namespacesm but similar to paramserv only by the physical namespace name.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/parser/dml/DmlSyntacticValidator.java", "new_path": "src/main/java/org/apache/sysds/parser/dml/DmlSyntacticValidator.java", "diff": "@@ -1116,7 +1116,9 @@ public class DmlSyntacticValidator implements DmlListener {\n//NOTE: the u...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2924] Support for namespaces in eval 2nd-order function calls So far, we only supported eval function calls of functions in default or builtin namespaces. This patch now extends that to all user namespacesm but similar to paramserv only by the physical namespace name.
49,697
14.05.2021 15:25:05
-7,200
706ee13c4d0f2a5bbb02781b589c27cf1c77030b
Fix codegen binary template for element-wise ops Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/hops/codegen/cplan/CNodeBinary.java", "new_path": "src/main/java/org/apache/sysds/hops/codegen/cplan/CNodeBinary.java", "diff": "@@ -76,6 +76,10 @@ public class CNodeBinary extends CNode {\nreturn ssComm || vsComm || vvComm;\n}\n...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2960] Fix codegen binary template for element-wise ops Closes #1245.
49,698
18.05.2021 23:11:37
-19,080
c3485c6f751a70dc2adb5edfc36d5d01d0d7e5ca
[MINOR] Add file encoding and file type for README.md Metadata: Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM discussion: Closes
[ { "change_type": "MODIFY", "old_path": "src/main/python/setup.py", "new_path": "src/main/python/setup.py", "diff": "@@ -50,7 +50,8 @@ setup(\nname=ARTIFACT_NAME,\nversion=ARTIFACT_VERSION_SHORT,\ndescription='SystemDS is a distributed and declarative machine learning platform.',\n- long_description=...
Java
Apache License 2.0
apache/systemds
[MINOR] Add file encoding and file type for README.md https://packaging.python.org/specifications/core-metadata/#description-content-type Metadata: Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM discussion: https://github.com/j143/systemds/issues/68 Closes #1281.
49,697
18.05.2021 20:44:38
-7,200
7325220d6581b37b5fd94bba7f782f2898e078e4
Federated codegen multi-aggregate operations Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/FEDInstructionUtils.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/fed/FEDInstructionUtils.java", "diff": "package org.apache.sysds.runtime.instructions.fed;\nimport org.apache.sy...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2922] Federated codegen multi-aggregate operations Closes #1277.
49,700
19.05.2021 10:45:09
-7,200
7fea8bf4ebc505f0fb8ed5532eeaebf12bc8e27b
[MINOR] Add Documentation Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/lops/Unary.java", "new_path": "src/main/java/org/apache/sysds/lops/Unary.java", "diff": "@@ -53,6 +53,7 @@ public class Unary extends Lop\n* @param dt data type\n* @param vt value type\n* @param et execution type\n+ * @param numT...
Java
Apache License 2.0
apache/systemds
[MINOR] Add Documentation Closes #1282.
49,757
19.05.2021 11:06:26
-7,200
2ae0f818d9fc5092408df6ff3fe75539a5117e40
Builtin for Stable Marriage Algorithm Closes
[ { "change_type": "ADD", "old_path": null, "new_path": "scripts/builtin/stableMarriage.dml", "diff": "+#-------------------------------------------------------------\n+## Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE file\n+# dis...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2976] Builtin for Stable Marriage Algorithm Closes #1279.
49,722
22.05.2021 22:13:36
-7,200
db30d5d319426fa3d0695670214515bef897b869
Federated frame element-wise map-lambda operations Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/InstructionUtils.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/InstructionUtils.java", "diff": "@@ -1128,7 +1128,7 @@ public class InstructionUtils\nreturn linst;\n}\n- private stati...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2978] Federated frame element-wise map-lambda operations Closes #1280.
49,689
23.05.2021 10:36:58
-7,200
dd2a8767e924cb33a0a4ca1060f2f36ebd9418e6
Add statistics for lineage cache in GPU This patch adds a initial set of statistics for reuse and eviction of GPU intermediates. e.g. LinCache GPU (Hit/Async/Sync): 38/26/25
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUMemoryEviction.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/gpu/context/GPUMemoryEviction.java", "diff": "@@ -25,6 +25,7 @@ import java.util.List;\nimport org.apache....
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2980] Add statistics for lineage cache in GPU This patch adds a initial set of statistics for reuse and eviction of GPU intermediates. e.g. LinCache GPU (Hit/Async/Sync): 38/26/25
49,738
23.05.2021 19:42:53
-7,200
2a78db42e9d65e4ab1e256e87913f343d243f523
Fix execution context creation in constant folding This patches fixes a recently introduce bug that assumed that every execution context is created with an available program, but this is clearly not the case in constant folding and other primitives.
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/ExecutionContextFactory.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/context/ExecutionContextFactory.java", "diff": "@@ -55,7 +55,7 @@ public class ExecutionContextFacto...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2953] Fix execution context creation in constant folding This patches fixes a recently introduce bug that assumed that every execution context is created with an available program, but this is clearly not the case in constant folding and other primitives.
49,698
29.05.2021 09:07:38
-19,080
f41707e304ddfa3f79d344896a694100fa7a97a6
[MINOR] fix rendering of tables, use space after headers Closes
[ { "change_type": "MODIFY", "old_path": "docs/site/builtins-reference.md", "new_path": "docs/site/builtins-reference.md", "diff": "@@ -1345,6 +1345,7 @@ sherlockPredict(X, cW1, cb1, cW2, cb2, cW3, cb3, wW1, wb1, wW2, wb2, wW3, wb3,\n| Type | Description |\n| :------------- | :---------- |\n| Matrix[D...
Java
Apache License 2.0
apache/systemds
[MINOR] fix rendering of tables, use space after headers Closes #1290.
49,738
29.05.2021 21:45:26
-7,200
d27b185f7ee6d210943eec618375894c6ffa20dd
Additional cleanups gridSearch (docs, args, defaults) This patch makes final cleanups in the gridSearch builtin function, now having correct handling for missing trainArgs, adding the handling of predictArgs, and adding the missing parameter documentation.
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/gridSearch.dml", "new_path": "scripts/builtin/gridSearch.dml", "diff": "#\n#-------------------------------------------------------------\n+\n+#-------------------------------------------------------------------------------\n+# X Input feature ...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2983] Additional cleanups gridSearch (docs, args, defaults) This patch makes final cleanups in the gridSearch builtin function, now having correct handling for missing trainArgs, adding the handling of predictArgs, and adding the missing parameter documentation.
49,722
30.05.2021 01:02:42
-7,200
88341e889666fc1cf3e9407886969afdfbf098e6
Federated frame tokenization (parameterized builtin) Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/instructions/InstructionUtils.java", "new_path": "src/main/java/org/apache/sysds/runtime/instructions/InstructionUtils.java", "diff": "@@ -1089,6 +1089,12 @@ public class InstructionUtils\nreturn InstructionUtils.concatOp...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2978] Federated frame tokenization (parameterized builtin) Closes #1284.
49,738
30.05.2021 01:24:29
-7,200
5f23666d50a7f70123e23c0e4e8c9d32d0c639d4
[MINOR] Cleanup list of builtin functions (alphabetical ordering)
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/common/Builtins.java", "new_path": "src/main/java/org/apache/sysds/common/Builtins.java", "diff": "@@ -38,16 +38,15 @@ import org.apache.sysds.common.Types.ReturnType;\n*/\npublic enum Builtins {\n//builtin functions\n- ARIMA(\"a...
Java
Apache License 2.0
apache/systemds
[MINOR] Cleanup list of builtin functions (alphabetical ordering)
49,692
02.06.2021 18:18:07
-7,200
fd4b0d05a38a29567c2a44d6c872c1f7d120cef8
Add initial lineage based debugger This patch adds a lineage based debugger which helps tracking the first operator responsible for a constraint violation. Currently, the supported constraints are NAN, positive infinity and negative infinity. AMLS project SS2021. Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/api/DMLOptions.java", "new_path": "src/main/java/org/apache/sysds/api/DMLOptions.java", "diff": "@@ -66,6 +66,7 @@ public class DMLOptions {\npublic ReuseCacheType linReuseType = ReuseCacheType.NONE; // reuse type (full, partial,...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2889] Add initial lineage based debugger This patch adds a lineage based debugger which helps tracking the first operator responsible for a constraint violation. Currently, the supported constraints are NAN, positive infinity and negative infinity. AMLS project SS2021. Closes #1286.
49,738
02.06.2021 22:19:48
-7,200
28742bc397887c5ab9c9a8f3193c311ebd4b9e39
[MINOR] Fix robustness and cleanup lmPredict, more gridSearch tests
[ { "change_type": "MODIFY", "old_path": "scripts/builtin/lmPredict.dml", "new_path": "scripts/builtin/lmPredict.dml", "diff": "@@ -23,8 +23,8 @@ m_lmPredict = function(Matrix[Double] X, Matrix[Double] B,\nMatrix[Double] ytest, Integer icpt = 0, Boolean verbose = FALSE)\nreturn (Matrix[Double] yhat)\n...
Java
Apache License 2.0
apache/systemds
[MINOR] Fix robustness and cleanup lmPredict, more gridSearch tests
49,713
07.05.2021 22:14:03
-7,200
bfc58f15aec8d65ab01e8488678c6eb9838f19d1
Python Multi Return Continuation This commit adds support for python multi return continuation. It give the ability to continue processing variables that are returned from a function call that return more than one variable.
[ { "change_type": "MODIFY", "old_path": "src/main/python/systemds/context/systemds_context.py", "new_path": "src/main/python/systemds/context/systemds_context.py", "diff": "@@ -38,7 +38,7 @@ import numpy as np\nimport pandas as pd\nfrom py4j.java_gateway import GatewayParameters, JavaGateway\nfrom py...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2828] Python Multi Return Continuation This commit adds support for python multi return continuation. It give the ability to continue processing variables that are returned from a function call that return more than one variable.
49,706
03.06.2021 15:56:56
-7,200
8970977d0349f26ca81150e52dd9e3a70ea4d3be
Python Tests Printing Fail Fix We have some unstable tests in the python api where the std out from systemds is captured in subsequent tests, rather than the tests intended. To fix this we simply add a small wait before probing the std out.
[ { "change_type": "ADD", "old_path": null, "new_path": "src/main/python/tests/script/__init__.py", "diff": "+# -------------------------------------------------------------\n+#\n+# Licensed to the Apache Software Foundation (ASF) under one\n+# or more contributor license agreements. See the NOTICE fi...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-3008] Python Tests Printing Fail Fix We have some unstable tests in the python api where the std out from systemds is captured in subsequent tests, rather than the tests intended. To fix this we simply add a small wait before probing the std out.
49,738
05.06.2021 01:21:20
-7,200
64a38eb6710dbbbca999db2333095de2ecc69e3a
Fix remaining issues consistent blocksize handling
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "diff": "@@ -826,7 +826,7 @@ public abstract class CacheableData<T extends CacheB...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-2981] Fix remaining issues consistent blocksize handling
49,722
05.06.2021 15:40:05
-7,200
e9ba92b36a8776b12aff95abb294fc7b6054d914
Additional federated MSVM algorithm tests Closes
[ { "change_type": "MODIFY", "old_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "new_path": "src/main/java/org/apache/sysds/runtime/controlprogram/caching/CacheableData.java", "diff": "@@ -1033,7 +1033,8 @@ public abstract class CacheableData<T extends Cach...
Java
Apache License 2.0
apache/systemds
[SYSTEMDS-3009] Additional federated MSVM algorithm tests Closes #1294.