Datasets:

HuggingFaceBio
/

clinvar-vep

Dataset card Data Studio Files Files and versions

Subset (2)

coding · 39.5k rows

Split (1)

test · 39.5k rows

chrom string	pos int64	ref string	alt string	label int64	CADD float64	phyloP-100v float64	phyloP-241m float64	phastCons-100v float64	GPN-MSA float32	NT float64	NT-v2 float64	HyenaDNA float32	Evo2-1B-Base float64	Evo2-7B-Base float64	Evo2-7B float64	GENERator-1B float64	GENERator-3B float64	GENERator-v2-1B float64	GENERator-v2-3B float64	type string	refseq_id string
16	2,210,566	C	T	0	0.079069	0.094	3.569	0	2.792969	0.545939	0.190129	-0.000002	0.703958	0.881457	1.348554	0.330769	2.528421	0.246479	2.285963	coding	NC_000016.10
16	2,210,611	T	C	0	-0.002514	-0.074	1.632	0.001	-3	-1.012782	-0.819789	-0.000001	-0.693147	-1.929428	-2.275948	-0.989785	0.997797	-0.494286	-1.026151	coding	NC_000016.10
16	2,214,765	C	T	0	1.740155	2.351	6.786	0.666	5.570313	2.45468	2.256494	-0.000001	3.359929	4.844094	5.010821	6.364822	5.850409	6.23798	5.607396	coding	NC_000016.10
16	2,278,016	T	G	1	3.845291	3.388	4.162	1	7.046875	1.925191	2.465205	-0.000001	5.59457	7.984099	7.689683	7.19797	8.485638	8.088524	9.428611	coding	NC_000016.10
16	2,278,348	A	G	1	3.937458	9.178	5.928	1	11.007813	3.393132	5.13253	0	7.334986	7.827462	8.390673	10.750822	10.069193	9.907111	10.451711	coding	NC_000016.10
16	2,281,191	C	T	1	3.742665	7.867	8.799	1	6.414063	1.032548	4.317998	-0.000001	6.036585	6.904391	6.992096	4.400386	6.562145	5.723775	6.262035	coding	NC_000016.10
16	2,295,725	A	C	1	3.967989	8.9	5.106	1	11.09375	0.918444	3.192585	0.000003	9.279177	8.72128	9.046702	8.913146	9.69716	8.362487	10.412841	coding	NC_000016.10
16	2,299,442	T	C	1	3.689008	7.955	0.272	1	9.414063	5.101976	4.687568	0	9.600264	7.851676	8.390673	8.155688	10.191608	8.52168	10.248458	coding	NC_000016.10
16	2,308,495	C	T	1	3.923129	7.315	8.842	1	5.46875	0.558002	0.713897	0	1.961142	4.621741	4.688326	4.072355	7.635606	6.593051	7.083168	coding	NC_000016.10
16	2,326,027	A	G	1	3.171228	4.725	6.173	0.181	4.847656	-0.535973	-0.190577	0.000002	-1.154965	0.037583	0.071309	4.692584	3.991082	5.242061	4.072872	coding	NC_000016.10
16	2,326,201	C	T	1	4.084559	6.672	8.693	1	6.332031	-0.610618	-0.547005	0	-0.813663	3.773703	3.589561	4.105261	5.292515	6.383583	6.852511	coding	NC_000016.10
16	2,438,114	T	G	1	2.0566	0.196	0.934	0.998	5.742188	-0.343505	-0.464504	-0.000001	-0.61123	5.610621	5.952971	7.667695	7.44274	6.512027	8.715292	coding	NC_000016.10
16	2,448,935	G	C	1	4.010315	7.802	8.577	0.998	7.164063	0.104531	0.013766	0.000001	7.460915	8.094623	7.24845	9.723794	9.542663	9.984525	10.690162	coding	NC_000016.10
16	2,455,540	A	G	1	3.369994	6.916	6.263	1	7.339844	-1.668268	-1.147983	-0.000001	5.430449	6.109707	7.148773	4.303643	7.819066	4.798596	7.836566	coding	NC_000016.10
16	2,455,549	G	A	1	4.147555	9.328	8.765	1	9.4375	0.640728	0.407387	-0.000001	5.337048	6.755708	7.017064	4.751698	6.739651	6.693591	6.541772	coding	NC_000016.10
16	2,496,206	C	G	1	1.903092	3.593	7.108	1	6.488281	0.403595	0.420736	-0.000001	5.214936	5.047882	5.378729	5.126234	7.76527	6.674417	7.521661	coding	NC_000016.10
16	2,496,263	G	C	1	4.096375	9.586	8.778	1	10.015625	-0.142727	0.186284	0.000004	7.056635	8.245902	9.075713	11.122896	10.965019	10.178889	10.135713	coding	NC_000016.10
16	2,496,264	C	T	1	3.794183	7.556	8.885	1	6.136719	-0.329483	-0.328128	0.000003	5.887944	5.748903	6.324267	6.891692	6.763743	6.758306	6.291917	coding	NC_000016.10
16	2,496,266	C	T	1	4.087048	3.652	8.885	0.997	7.332031	1.273068	1.18729	0.000001	4.425288	4.970814	5.577309	5.632085	6.267359	5.034618	4.934775	coding	NC_000016.10
16	2,496,342	G	T	1	3.460358	9.987	8.778	1	10.742188	-0.667532	-0.572576	-0.000001	6.967693	8.06993	8.733045	8.80602	7.824603	8.186903	8.4734	coding	NC_000016.10
16	2,496,356	G	T	1	3.554622	9.987	8.778	1	12.796875	1.740367	2.526837	-0.000003	8.126371	8.378147	9.565658	10.350002	10.84264	11.20768	10.467308	coding	NC_000016.10
16	2,496,461	T	C	1	3.982021	8.005	6.348	1	10.46875	-0.416534	-0.540554	0	6.793069	5.921655	6.931472	10.633251	8.767151	11.130426	6.746065	coding	NC_000016.10
16	2,496,587	G	C	1	3.732533	7.972	7.03	1	7.644531	-0.323736	-0.410913	0.000002	4.138762	7.329155	8.172584	7.553384	7.995066	6.868459	6.304426	coding	NC_000016.10
16	2,496,681	C	T	1	3.710233	6.076	8.89	1	7.519531	0.246809	-0.742205	0.000001	8.206126	7.999312	8.264522	6.128307	8.941312	7.512105	7.994329	coding	NC_000016.10
16	2,496,834	T	C	1	4.020138	7.964	6.328	1	10.0625	0.691103	0.777927	0.000001	8.429222	8.57974	8.437994	3.089213	8.334457	9.166743	8.654151	coding	NC_000016.10
16	2,496,873	G	A	1	3.782739	9.934	8.751	1	9.445313	-0.649248	-0.442933	-0	7.601452	7.506836	7.776169	8.536809	6.858957	7.696223	5.835248	coding	NC_000016.10
16	2,496,899	T	C	1	3.947785	6.01	6.328	1	7.484375	-0.084793	-0.10343	0.000001	6.863521	7.267163	7.420403	8.755777	6.706913	8.244858	9.630977	coding	NC_000016.10
16	2,497,026	G	C	1	3.939079	9.934	8.751	1	11.929688	-0.101833	-0.611609	-0.000002	9.237971	8.813088	8.972594	11.015564	11.903427	12.77075	11.116082	coding	NC_000016.10
16	2,497,067	A	C	1	3.351872	9.262	6.303	1	10.164063	0.208473	0.515581	-0.000002	7.000465	8.390673	8.235322	8.232131	8.092736	8.9517	8.4566	coding	NC_000016.10
16	2,498,253	G	T	1	3.249304	1.799	4.586	1	9.085938	-0.405477	-0.341847	0.000001	5.643082	8.325929	8.940846	8.08805	8.793136	7.862865	10.442139	coding	NC_000016.10
16	2,500,466	G	A	1	3.861897	9.51	8.705	1	8.695313	1.796934	2.129456	0.000001	6.518164	6.332851	6.959196	7.651034	8.602186	7.18193	8.360442	coding	NC_000016.10
16	2,519,722	G	A	1	4.350886	9.661	8.072	1	9.945313	-0.390321	-0.398884	0.000003	9.330344	7.184468	7.506836	6.84759	9.230433	6.077882	10.584533	coding	NC_000016.10
16	2,530,911	T	C	0	-0.810919	-1.381	0.183	0	-0.697266	-0.841283	-0.769777	0.000002	-0.81628	-0.891324	-0.905117	-0.834793	-0.772044	-0.892113	-0.827514	coding	NC_000016.10
16	2,762,938	C	A	0	0.952158	0.765	1.62	0.016	4.378906	2.697881	1.259646	0	0.417053	2.05778	3.648874	6.474673	5.025717	4.712344	4.800136	coding	NC_000016.10
16	2,771,572	C	T	0	0.621848	-0.547	0.262	0	1.347656	-0.054931	-0.007153	-0	0.051075	0.043571	0.00404	0.01624	0.094132	-0.074135	0.046291	coding	NC_000016.10
16	2,798,985	G	T	0	-1.957165	-6.157	-0.607	0	-0.586426	1.162259	-0.091068	0.000001	1.720227	1.337504	1.53564	0.06659	-0.498202	0.054007	0.613331	coding	NC_000016.10
16	2,804,506	T	G	0	3.422046	5.939	0.802	0.645	5.003906	0.221404	-1.036102	0.000001	-0.856108	-0.843429	-3.908015	1.863679	4.476272	4.590655	2.108411	coding	NC_000016.10
16	2,817,449	G	C	0	0.736417	-0.191	0.212	0	1.399414	0.393419	0.433152	0.000001	-0.250186	-0.349303	0.014389	1.425123	1.850993	0.553965	2.344331	coding	NC_000016.10
16	2,936,839	G	C	0	0.100381	-0.16	-0.639	0	1.509766	1.119915	0.93737	0	1.337504	1.058607	1.229346	1.218527	1.173749	1.288657	1.238675	coding	NC_000016.10
16	2,964,998	C	G	0	1.186975	-0.32	1.237	0.406	-2.609375	0.222843	-0.128518	0	-2.620397	-1.282033	-1.507321	-5.276319	-4.191737	-3.472928	-2.846838	coding	NC_000016.10
16	2,967,123	C	A	0	1.846339	-0.08	2.171	0	4.117188	1.597644	0.865635	-0.000002	1.610635	6.168799	7.24845	7.307672	8.802556	7.768615	8.725542	coding	NC_000016.10
16	3,000,596	T	C	0	0.34937	0.305	1.501	0	-1.296875	-0.024407	-0.27906	0.000003	-0.281528	-0.270124	-0.315591	-0.270966	-0.144308	-0.362063	0.095658	coding	NC_000016.10
16	3,015,595	T	C	0	1.468149	1.818	1.3	1	4.128906	4.321808	4.095718	0.000001	2.673103	3.941333	1.669336	3.544301	2.427888	2.934408	4.039075	coding	NC_000016.10
16	3,023,239	G	T	0	2.825712	1.942	3.403	0.948	4.9375	0.749009	0.50735	-0.000001	0.848096	6.007338	6.328922	-1.549152	4.186815	6.31152	3.253292	coding	NC_000016.10
16	3,025,804	G	A	1	4.36521	8.906	8.757	1	6.769531	-1.825967	0.704355	0.000002	4.982193	5.839417	6.963221	7.901308	7.431851	8.927813	7.971569	coding	NC_000016.10
16	3,026,891	A	C	1	2.709691	5.707	6.214	1	8.140625	0.421617	0.637668	-0.000003	3.143533	9.233081	8.939049	6.916005	9.346626	5.361511	9.799914	coding	NC_000016.10
16	3,028,164	A	G	0	2.708716	0.384	4.355	0.008	4.484375	-0.257643	-0.297948	-0.000001	0.838958	7.01315	6.075806	-0.302277	5.47505	1.018011	5.775254	coding	NC_000016.10
16	3,029,684	T	C	0	2.981323	0.097	3.677	0.002	3.644531	0.927773	0.416687	-0.000001	4.604676	4.625613	5.480145	5.176812	2.030078	5.811775	3.424865	coding	NC_000016.10
16	3,035,334	G	C	0	2.308678	5.038	8.651	1	8.28125	0.111089	-0.271642	-0.000003	3.905792	5.698017	5.339509	7.919511	10.624294	7.376874	9.482904	coding	NC_000016.10
16	3,059,031	G	A	0	1.612091	0.73	0.743	0.001	1.765625	0.846841	1.097497	-0.000002	3.670148	3.412554	3.854807	3.637268	3.885646	4.467641	3.843139	coding	NC_000016.10
16	3,067,425	C	T	0	-0.501785	-0.893	-0.727	0	-1.40625	0.709664	0.330435	-0	0.012987	0.074108	-0.025642	0.202704	0.065147	0.125601	0.115154	coding	NC_000016.10
16	3,115,424	A	G	0	-0.855981	-3.13	-2.002	0	0.183105	-0.230881	0.56475	-0.000001	1.009485	0.948394	1.035099	0.664576	1.296901	0.615427	1.13743	coding	NC_000016.10
16	3,204,470	T	C	0	1.157825	1.487	5.386	0.002	-4.59375	-3.823562	-4.285432	0.000001	-5.289498	-4.380044	-3.445695	-4.769711	-4.982667	-4.732135	-4.506582	coding	NC_000016.10
16	3,243,447	C	G	1	0.017937	-0.167	0.564	0	2.585938	0.301269	-0.770991	-0.000003	-0.170411	3.317606	3.902163	3.353539	3.782486	4.997977	3.298319	coding	NC_000016.10
16	3,243,447	C	T	1	0.083815	-0.167	0.564	0	2.283203	1.024963	1.483692	-0.000002	1.229804	3.71226	4.043814	2.620283	3.520591	3.233968	2.707014	coding	NC_000016.10
16	3,243,888	C	T	0	0.343222	-0.206	-0.153	0	-2.095703	-0.163665	0.075316	0.000004	-0.990982	0.156004	-1.730307	-3.717492	-2.206709	-4.467406	-2.685968	coding	NC_000016.10
16	3,254,338	C	T	1	3.501497	3.532	7.12	0.996	7.035156	2.089746	1.430796	0.000001	0.514818	2.026672	2.070267	1.165002	3.270175	2.462712	3.878685	coding	NC_000016.10
16	3,254,342	G	T	1	2.325824	0.268	-0.06	0.997	5.714844	2.254457	1.593526	0	0.487439	1.644123	2.633059	1.157609	3.670517	3.301164	3.730957	coding	NC_000016.10
16	3,254,463	C	T	0	-1.577762	-2.579	-2.835	0	2.066406	0.391913	0.38937	-0.000001	0.271934	-0.63908	0.508576	0.253554	0.852367	0.006542	0.004141	coding	NC_000016.10
16	3,254,736	C	T	1	-0.302244	-0.629	-0.137	0	2.806641	-0.18119	-0.600538	0.000001	-0.393302	1.018945	1.507176	-0.969477	2.598515	-0.800216	2.807974	coding	NC_000016.10
16	3,289,435	G	C	0	-0.605621	-1.236	1.09	0	-1.273438	-1.68197	-1.428285	0.000002	0.198851	-2.547505	-2.597301	-3.574542	-5.42471	-2.710376	-5.674533	coding	NC_000016.10
16	3,317,229	T	C	0	-0.048216	-0.052	0.369	0	1.626953	0.436926	0.383713	-0.000004	0.727833	2.658644	3.605091	4.50359	3.542276	4.129846	3.6123	coding	NC_000016.10
16	3,355,986	G	A	0	3.289067	7.814	5.345	1	5.628906	5.789093	4.247151	0.000001	0.447792	4.711578	3.758897	0.534444	1.595781	1.412166	1.666544	coding	NC_000016.10
16	3,356,626	G	A	0	0.404709	-1.409	0.186	0	1.873047	1.139262	-0.077521	0.000001	0.384412	0.933784	1.028545	1.532333	1.747425	1.214729	1.502318	coding	NC_000016.10
16	3,384,699	A	G	0	0.83611	-0.296	-0.31	0	2.201172	-0.504794	-0.333159	0.000001	-0.534601	2.76001	3.965909	4.520896	7.74771	4.526869	7.942729	coding	NC_000016.10
16	3,397,282	C	G	0	1.865227	-0.172	2.761	0.528	3.851563	2.7843	2.426015	-0	2.320151	2.104506	2.232776	3.624236	6.271081	3.802881	6.094455	coding	NC_000016.10
16	3,484,892	G	A	0	-0.695273	-3.028	-2.401	0	-0.697754	-1.122822	-0.83381	0.000001	-0.780159	0.299922	-0.216486	0.510201	1.441391	0.916675	1.009003	coding	NC_000016.10
16	3,523,261	C	T	1	3.493834	4.861	8.903	1	7.5	0.334656	0.286293	-0.000002	3.038648	2.987536	2.665556	5.930382	6.617782	5.669401	6.346341	coding	NC_000016.10
16	3,536,230	C	T	0	3.092501	0.944	2.432	0.849	3.460938	-0.071519	0.316782	0.000003	6.609269	4.115654	4.417654	5.636543	5.654835	4.950841	5.299202	coding	NC_000016.10
16	3,563,903	C	G	0	-0.437466	-0.199	-0.499	0	2.248047	-0.242342	0.093499	-0.000001	0.57154	4.14552	5.030069	6.463172	5.469454	5.798634	5.367594	coding	NC_000016.10
16	3,563,927	A	G	0	-1.794797	-0.644	-3.628	0	0.443359	0.455357	0.360766	0	-0.402993	-1.313623	-1.800976	-2.24206	-1.396715	-1.3766	-0.920125	coding	NC_000016.10
16	3,590,273	G	A	0	0.39518	0.123	0.492	0.002	-0.419922	-1.050505	-0.941548	0	-0.663733	0.541802	-0.66275	-1.830751	1.891148	-2.708623	0.256071	coding	NC_000016.10
16	3,590,784	C	T	0	0.20296	0.013	0.425	0	2.234375	0.404191	0.506868	0.000001	0.231442	0.242367	0.255933	0.299178	1.061937	0.410866	0.142459	coding	NC_000016.10
16	3,595,606	A	G	0	0.757344	0.591	1.471	0.281	-2.582031	1.276297	1.396403	0	0.809511	-2.137429	-2.491507	-1.604937	-3.902309	-1.993623	-2.777873	coding	NC_000016.10
16	3,597,691	A	C	0	1.279917	0.525	2.505	0.999	-7.085938	-1.089521	-0.820928	0.000003	-0.893818	-5.499809	-2.367124	-8.201396	-6.127305	-8.34902	-6.081613	coding	NC_000016.10
16	3,600,986	T	C	0	0.01972	0.353	0.88	0	-0.296387	-0.166892	-0.48893	-0.000003	-0.278465	-0.254676	-0.324926	-0.352583	-2.762588	-0.30426	-1.396038	coding	NC_000016.10
16	3,657,746	G	A	0	0.985661	-0.055	1.742	0	-4.226563	-1.13852	-0.870326	0.000001	-2.244766	-2.070592	-0.841567	-3.769176	-1.730137	-2.50071	-2.819027	coding	NC_000016.10
16	3,671,772	G	C	0	3.394	2.421	2.238	1	8.03125	0.872586	0.688329	0.000001	7.053362	3.363196	8.46482	6.209409	11.865438	6.979763	12.576497	coding	NC_000016.10
16	3,717,472	G	A	0	2.193184	0.683	1.697	0.709	3.169922	1.165315	1.405337	-0	1.357895	1.077886	1.348375	0.913365	1.44023	1.431752	0.943041	coding	NC_000016.10
16	3,729,445	G	A	1	4.090452	2.419	5.517	1	8.828125	2.167899	2.255026	0.000001	9.156469	7.359338	7.099087	5.34016	6.686024	6.543916	7.480872	coding	NC_000016.10
16	3,729,447	C	A	1	4.041366	7.777	0.968	1	12.742188	-0.098651	-0.489281	0.000003	10.125274	9.565658	8.72128	9.394304	7.560679	9.065461	7.988688	coding	NC_000016.10
16	3,729,447	C	T	1	4.074962	7.777	0.968	1	10.351563	-2.521713	-2.598806	0.000001	6.893153	7.656368	7.459369	4.819387	5.057906	2.179258	4.221382	coding	NC_000016.10
16	3,729,448	G	A	1	4.147376	3.491	1.714	1	9	2.220535	2.378743	-0.000001	8.608963	7.953877	7.656954	5.797154	7.478815	5.992738	7.608208	coding	NC_000016.10
16	3,729,534	C	T	1	3.916898	7.842	8.542	1	12.3125	0.645929	6.362466	-0	9.408596	8.61067	8.361685	7.880542	8.886821	7.822418	10.016637	coding	NC_000016.10
16	3,729,608	G	C	1	0.979888	-0.41	-4.242	0.231	9.101563	0.272673	0.660625	-0.000001	7.891682	7.466275	8.249112	6.126099	8.074964	7.562361	7.084658	coding	NC_000016.10
16	3,729,686	G	T	1	2.362085	-0.257	-0.674	0.192	9.070313	1.568815	3.04375	-0.000001	8.217123	8.233947	7.75218	8.519284	10.224409	8.662779	9.078618	coding	NC_000016.10
16	3,729,711	A	G	1	4.147825	9.243	2.653	1	11.679688	0.848758	5.374005	0.000001	11.357418	8.93569	8.271957	9.842527	9.88346	9.314886	9.532372	coding	NC_000016.10
16	3,731,194	C	T	1	4.657304	7.905	8.629	1	10.234375	-0.947893	-0.776691	-0.000001	1.006805	4.371445	5.892823	4.903608	5.568467	3.757797	5.036138	coding	NC_000016.10
16	3,731,195	G	C	1	2.614664	-0.04	-1.823	0.77	8.734375	0.557427	2.089337	0.000003	2.117663	4.008601	5.322034	6.225301	7.184291	5.336403	4.548968	coding	NC_000016.10
16	3,731,235	C	T	1	4.123718	7.905	8.667	1	11.921875	0.766849	3.182953	0.000001	8.361685	8.353555	8.172584	9.690116	8.884017	8.691192	8.861841	coding	NC_000016.10
16	3,731,236	A	G	1	4.123338	7.514	4.568	1	10.429688	1.360643	3.797773	-0.000001	0.40709	8.72128	8.374006	7.918834	9.408206	6.772779	8.997483	coding	NC_000016.10
16	3,736,651	T	C	1	5.198252	8.017	6.357	1	8.6875	2.999783	3.137602	-0.000001	-0.237038	1.603867	1.70881	-0.090868	-0.317227	-0.150927	-0.161314	coding	NC_000016.10
16	3,736,702	T	C	1	4.38844	8.017	6.357	1	10.804688	0.830275	0.968326	-0.000001	9.303817	8.126371	8.126371	7.624332	10.432878	7.571569	10.25671	coding	NC_000016.10
16	3,736,715	G	C	1	3.855562	4.192	4.968	1	10.09375	0.288401	0.382533	0.000002	9.203425	8.624601	8.673839	8.769339	8.9667	8.921803	9.172679	coding	NC_000016.10
16	3,736,730	G	A	1	4.059507	10.003	8.792	1	9.820313	0.546908	0.579342	-0.000001	9.7982	8.492306	8.302262	7.305305	8.115858	7.098653	8.21511	coding	NC_000016.10
16	3,736,766	A	C	1	4.301849	9.325	6.332	1	11.679688	0.198374	0.204245	-0.000001	6.706755	8.61067	8.424864	11.802103	9.805045	10.183729	10.042986	coding	NC_000016.10
16	3,736,801	T	C	1	4.068158	8.017	6.357	1	11.765625	0.63658	0.550215	-0.000002	9.267824	8.126371	8.100892	10.44036	8.361	10.573725	9.386395	coding	NC_000016.10
16	3,738,559	C	T	1	5.667175	7.905	8.903	1	11.375	0.274918	0.880854	0.000001	-0.431244	0.855666	1.306742	1.65552	0.534147	2.234909	1.413011	coding	NC_000016.10
16	3,738,560	C	T	1	4.630911	7.905	8.903	1	11.226563	-0.238581	-0.778137	-0	-0.565119	2.845348	3.283414	3.401995	2.500888	5.924967	1.72047	coding	NC_000016.10
16	3,738,605	A	G	1	4.294499	9.325	6.335	1	11.148438	0.725201	0.294385	-0.000001	7.982411	7.749261	7.999312	7.906973	6.266252	7.815468	6.112168	coding	NC_000016.10

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