Datasets:

HuggingFaceBio
/

clinvar-vep

Dataset card Data Studio Files Files and versions

Subset (2)

coding · 39.5k rows

Split (1)

test · 39.5k rows

chrom string	pos int64	ref string	alt string	label int64	CADD float64	phyloP-100v float64	phyloP-241m float64	phastCons-100v float64	GPN-MSA float32	NT float64	NT-v2 float64	HyenaDNA float32	Evo2-1B-Base float64	Evo2-7B-Base float64	Evo2-7B float64	GENERator-1B float64	GENERator-3B float64	GENERator-v2-1B float64	GENERator-v2-3B float64	type string	refseq_id string
16	11,390,194	T	G	0	-0.230413	-1.91	-0.503	0	-3.138672	-1.356069	-1.627276	0.000002	-1.140257	-3.756791	-3.868765	-0.896592	-0.965025	-1.122529	-0.935563	coding	NC_000016.10
16	11,390,336	T	A	0	-0.008788	-1.136	-1.875	0	-2.376953	-0.495154	-0.616096	0	-0.684414	-2.088533	-1.653609	-0.564046	-0.825954	-0.569458	-0.913428	coding	NC_000016.10
16	11,391,784	C	T	0	0.710663	0.568	1.394	0	1.518555	1.488332	1.137988	-0.000002	0.95013	1.134119	1.217218	1.001978	1.19294	0.829727	1.254074	coding	NC_000016.10
16	11,392,340	C	T	0	2.197381	1.052	0.503	0.001	1.460938	0.285908	0.321733	0.000002	-0.405465	2.336987	0.661196	-0.215987	-0.071701	-0.357224	-0.147513	coding	NC_000016.10
16	11,393,487	G	A	0	2.650323	1.472	0.913	0.711	1.202148	-0.453219	-0.826826	0.000002	-0.567984	1.396604	1.636174	-1.332382	-0.980274	-1.028069	-0.681368	coding	NC_000016.10
16	11,412,845	C	T	0	-0.402088	-0.746	-0.202	0	3.162109	-0.149399	-0.051841	-0.000002	-0.157506	0.173406	0.431345	-0.108066	0.339158	0.036308	0.274117	coding	NC_000016.10
16	11,423,214	A	G	0	0.160318	0.361	0.381	0	-0.918945	0.490092	-0.006011	-0.000001	0.306226	0.869472	1.23659	0.986082	0.90738	1.011626	0.279414	coding	NC_000016.10
16	11,423,234	G	A	0	1.038525	0.161	-2.511	0	0.5	-2.031675	-1.347666	0.000001	-1.095807	-1.316266	-1.438119	-1.17717	-1.105732	-1.201643	-1.280717	coding	NC_000016.10
16	11,423,963	C	T	0	0.267953	1.386	0.735	0.002	2.75	1.365523	0.55571	-0.000005	-0.071228	-0.100976	-0.305046	0.820708	0.208966	0.639494	0.420276	coding	NC_000016.10
16	11,424,257	G	C	0	0.024316	-0.509	-0.104	0	-1.541016	0.721469	0.646651	-0.000003	1.328883	1.237259	0.586436	1.145921	1.1046	1.57697	0.956289	coding	NC_000016.10
16	11,425,350	C	T	0	-0.199085	-3.528	-1.739	0	0.477539	1.427842	1.306748	0.000001	1.038417	1.729687	2.225331	1.467789	1.022237	1.304188	1.101818	coding	NC_000016.10
16	11,448,040	G	A	0	-0.255968	-0.089	0.359	0.001	-0.799316	-0.022315	-0.32367	0.000003	-0.685874	0.587166	-1.489835	-0.392617	-0.404691	-0.629294	-0.744252	coding	NC_000016.10
16	11,449,038	C	T	0	-0.018026	-0.175	-0.569	0	0.59082	0.723646	0.932178	-0.000002	0.296611	2.888791	2.070631	0.42201	-0.216269	0.40661	-0.031895	coding	NC_000016.10
16	11,450,653	C	G	0	1.014003	0.947	0.753	0.008	3.998047	0.449875	0.475901	-0	0.613104	4.036594	4.360004	0.833969	0.620406	0.615754	0.365889	coding	NC_000016.10
16	11,450,817	G	A	0	1.741278	-0.314	0.281	0.01	3.304688	0.123123	0.603878	-0	0.511635	3.433344	2.1721	0.523416	0.365392	0.575766	0.441561	coding	NC_000016.10
16	11,459,986	G	C	0	0.317243	0.203	-0.293	0.998	2.367188	0.714177	0.390342	0.000001	1.076139	0.440972	4.401933	0.856761	1.074121	1.041762	1.732073	coding	NC_000016.10
16	11,475,662	G	C	0	-1.145787	-0.906	-2.402	0.001	-0.284912	0.430932	0.308173	-0.000006	0.426818	1.361753	-0.140582	0.588822	0.358257	0.433291	0.386883	coding	NC_000016.10
16	11,477,825	G	A	0	3.041947	4.01	2.155	1	4.78125	0.092113	-0.217841	0.000001	0.533933	3.453262	3.159006	1.001524	2.043405	1.112053	1.073177	coding	NC_000016.10
16	11,488,714	C	T	0	0.299786	-0.91	-0.817	0.006	0.925781	-0.846771	-0.702223	0.000004	-0.051776	0.936179	0.917816	-0.318685	0.367361	-0.253294	0.128672	coding	NC_000016.10
16	11,514,388	T	A	0	0.443713	-0.109	-2.991	0.007	4.578125	0.206871	0.299255	-0.000001	0.505749	0.588522	0.190808	0.23236	0.173053	0.087436	0.056087	coding	NC_000016.10
16	11,514,443	G	A	0	-0.404232	0.102	-3.083	0.002	-2.480469	0.643751	0.534581	-0.000003	0.058411	0.143101	0.310434	0.048781	0.039535	0.047798	0.083763	coding	NC_000016.10
16	11,549,720	G	T	1	4.03293	7.61	8.421	1	9.765625	0.442374	0.107303	0.000001	9.314344	8.57974	8.845664	10.122248	10.818148	8.704944	11.81642	coding	NC_000016.10
16	11,553,546	G	C	1	3.797301	5.477	5.845	1	9.101563	0.62137	0.517489	-0.000003	1.850375	6.658003	6.861404	6.548631	9.232269	5.316829	9.067975	coding	NC_000016.10
16	11,553,564	A	C	1	4.498626	6.703	6.298	1	11.53125	0.104197	0.351631	-0.000002	6.315756	8.045832	7.96031	9.616509	12.699018	8.524062	11.145994	coding	NC_000016.10
16	11,553,576	C	T	1	3.59278	5.693	8.851	0.997	6.636719	0.212122	0.110284	0.000002	5.803237	5.844694	5.163618	2.667437	7.509996	2.952347	6.308019	coding	NC_000016.10
16	11,553,578	G	C	1	3.018167	7.179	8.745	0.984	7.984375	-0.147778	0.311173	0	3.84739	5.593574	5.986575	5.965729	7.260607	5.436404	9.991914	coding	NC_000016.10
16	11,553,636	T	C	0	-0.364886	0.37	0.184	0.073	-2.699219	0.206237	0.018032	0.000003	-3.699985	-0.782759	-3.126352	-2.09215	-5.711764	-2.864759	-6.170994	coding	NC_000016.10
16	11,679,806	C	G	0	1.218717	1.501	4.133	1	-6.25	-0.226169	0.010981	0.000004	-5.416699	-4.345581	-4.070776	-6.534963	-6.507668	-4.10115	-6.78734	coding	NC_000016.10
16	11,742,652	G	A	0	2.398972	2.32	2.498	1	4.726563	0.840585	0.549195	-0	0.631694	-0.174072	0.997469	2.293992	2.993247	4.278467	3.713748	coding	NC_000016.10
16	11,758,498	A	C	0	0.951017	1.745	-0.269	1	4.589844	1.490333	1.635175	-0.000002	1.47496	2.994489	4.49621	7.06447	4.538477	5.809496	4.187765	coding	NC_000016.10
16	11,779,302	T	C	0	0.457727	0.472	-0.546	0.001	-1.426758	1.086388	0.251912	0	-2.819909	-2.246097	-3.161859	-4.503336	-2.491868	-5.51345	-3.083236	coding	NC_000016.10
16	11,915,420	C	A	0	3.258558	2.943	7.617	0.867	6.527344	2.948425	3.291275	-0.000001	2.558518	2.159791	2.297966	3.826222	6.21527	4.782557	5.851093	coding	NC_000016.10
16	11,915,447	C	A	0	2.87054	0.743	4.357	0.991	7.65625	2.327939	2.601394	-0.000002	2.198732	1.95329	1.767308	5.887188	7.656725	5.547422	7.950577	coding	NC_000016.10
16	11,927,629	G	A	0	0.565904	0.089	0.075	0.189	1.175781	3.458428	3.020432	-0.000002	1.032278	1.038269	1.014055	0.658069	0.709136	0.729704	0.807472	coding	NC_000016.10
16	11,933,924	A	C	0	0.066509	-0.5	-3.415	0.996	-4.828125	0.938407	0.915431	-0.000002	0.251314	-2.353878	4.491145	0.476524	0.393297	0.461532	2.256511	coding	NC_000016.10
16	12,665,109	T	C	0	1.255062	0.323	-0.065	0.849	1.335938	0.313678	0.1313	0.000002	2.591675	1.422104	1.872389	2.81826	3.587049	3.131152	4.294944	coding	NC_000016.10
16	12,803,721	G	T	0	1.723809	0.89	3.694	1	-6.820313	1.305394	1.29444	0	1.697572	1.706305	1.582627	1.271167	1.412667	0.800878	1.446055	coding	NC_000016.10
16	12,908,502	T	C	0	0.688159	1	0.021	0.002	-1.03418	-0.842373	-1.106799	0	-0.509426	-0.778305	-0.700165	-0.71069	-0.879566	-0.613061	-0.751367	coding	NC_000016.10
16	13,926,630	G	C	1	4.515295	9.602	8.791	1	12.195313	-0.905236	-1.104199	0.000003	9.607331	7.54427	8.957669	11.251299	12.337649	9.645336	11.661258	coding	NC_000016.10
16	13,928,132	T	C	1	4.253114	7.674	6.357	1	10.523438	0.295407	0.464772	-0.000005	7.933354	8.525406	8.469316	9.867901	10.252225	5.761246	9.978388	coding	NC_000016.10
16	13,935,176	G	A	0	4.397391	9.602	8.788	1	7.769531	-1.262198	-1.377401	0.000001	4.779618	6.089229	5.778173	5.945857	6.044487	5.81064	6.911526	coding	NC_000016.10
16	13,944,802	T	C	0	0.825542	0.463	1.403	0.015	3.335938	-0.154723	-0.207827	0.000001	-0.721721	-0.117251	1.412136	2.104602	5.141489	3.439924	3.967511	coding	NC_000016.10
16	14,212,404	G	C	1	4.22553	8.02	8.796	1	10.796875	0.809542	0.859275	0	8.217123	8.42095	9.144445	10.918514	9.774381	9.225064	8.898292	coding	NC_000016.10
16	14,213,578	C	G	1	3.700505	1.479	8.903	0.937	9.414063	-0.129985	-0.069826	0.000002	8.496135	7.860722	7.810336	5.724017	7.542188	7.160476	7.056984	coding	NC_000016.10
16	14,580,874	T	C	1	4.237362	7.951	6.354	1	8.398438	0.556452	-0.325166	-0	0.287682	0.593618	0.583948	0.901886	0.580521	0.712078	1.046855	coding	NC_000016.10
16	14,582,225	G	A	1	4.230328	10.003	8.792	1	8.273438	0.037109	0.338757	0.000001	6.23438	7.542175	7.988013	1.520027	6.85566	2.348328	6.564111	coding	NC_000016.10
16	14,648,543	T	G	0	2.249789	3.606	7.042	1	-7.558594	0.339784	0.064439	0.000001	-2.367124	-7.858648	-8.483751	-7.235251	-7.345753	-7.251257	-7.234603	coding	NC_000016.10
16	14,864,657	A	G	0	1.336917	3.05	1.886	1	-1.745117	1.241526	0.988731	-0	-0.206536	-4.203515	-3.354723	-5.364829	-1.664362	-3.556493	-3.051404	coding	NC_000016.10
16	15,038,105	A	G	0	2.079956	4.623	5.726	1	-5.082031	0.245367	-0.046047	0.000001	0.313295	-6.082495	-6.677557	-0.63816	-6.227219	-1.684756	-7.519183	coding	NC_000016.10
16	15,038,117	G	T	0	0.685153	0.417	1.722	0	-1.606445	-0.204849	-0.24666	0.000002	-0.581403	-1.225952	-1.932581	-4.945826	-4.015883	-3.471084	-0.630023	coding	NC_000016.10
16	15,073,034	T	C	0	1.991238	1.051	0.027	0.865	3.503906	-0.162542	-0.478086	-0	-0.871073	1.447939	1.858654	4.701518	6.978613	5.212405	6.716369	coding	NC_000016.10
16	15,076,595	C	A	0	1.320013	0.379	1.281	0.001	3.787109	-0.312985	-0.357038	0.000003	-0.056753	2.588017	1.94591	0.388089	7.431091	4.40054	6.86533	coding	NC_000016.10
16	15,363,711	C	A	0	0.776659	0.137	-0	0.003	0.228516	4.902248	3.954207	-0.000002	0.231203	0.273696	0.232403	0.077833	-0.161766	0.149475	0.163122	coding	NC_000016.10
16	15,699,758	C	T	0	1.890862	1.179	2.36	0.911	1.180664	0.261512	-0.049896	0.000003	-0.105361	4.084192	-0.212333	5.104308	4.193191	3.64826	3.003443	coding	NC_000016.10
16	15,867,499	C	T	0	1.717956	1.026	3.377	0.011	1.745117	-0.802021	-0.159716	0.000002	-0.44243	-0.611174	-0.417513	-0.781197	-0.757184	-0.713289	-0.893804	coding	NC_000016.10
16	15,882,999	A	G	0	0.907081	-0.604	-3.841	0.009	2.636719	0.306147	0.506312	-0.000001	0.439598	0.711839	0.644058	0.392186	0.30869	0.46034	0.374668	coding	NC_000016.10
16	16,068,247	A	G	1	3.966793	9.294	4.615	1	8.664063	0.063415	0.1861	-0	5.322034	4.636027	4.642417	5.140862	4.282353	4.006612	4.568284	coding	NC_000016.10
16	16,150,765	G	T	1	4.122869	9.826	8.785	1	10.164063	1.679055	5.723925	-0.000001	7.677801	7.139727	7.80459	9.277397	8.593401	8.889547	7.826234	coding	NC_000016.10
16	16,150,768	C	T	1	4.016839	7.769	8.892	1	8.023438	3.697288	4.369173	-0	6.324267	6.94326	7.069477	6.284798	5.919539	7.082197	5.414846	coding	NC_000016.10
16	16,150,772	G	T	1	1.850021	-0.238	-5.171	0.004	6.75	0.790616	1.300457	0.000002	7.058224	6.796369	5.93795	2.691615	5.222669	3.670269	5.649816	coding	NC_000016.10
16	16,154,638	C	T	1	2.089322	2.196	0.454	0.831	2.363281	0.323286	1.936001	0	0.330242	3.671106	2.466724	1.813121	2.903311	-0.769875	2.58884	coding	NC_000016.10
16	16,154,776	C	G	1	3.839186	7.872	7.132	1	10.632813	0.479543	5.519983	-0	6.931472	8.43408	7.857615	9.317493	8.721359	8.604609	8.958042	coding	NC_000016.10
16	16,154,873	C	G	1	5.606581	7.894	8.873	1	11.765625	3.313913	6.416308	-0.000004	3.916458	4.079176	3.714433	6.482064	4.726848	7.724356	8.904662	coding	NC_000016.10
16	16,154,899	G	A	1	3.101593	0.96	0.294	0.745	3.884766	1.700163	4.117491	0.000002	4.350774	5.402861	5.495454	4.658869	6.17606	4.222408	6.906871	coding	NC_000016.10
16	16,154,910	A	G	1	4.326365	9.311	6.314	1	8.71875	0.981069	5.301035	-0.000003	7.527889	7.210045	6.983798	8.171298	9.723023	7.106602	9.951468	coding	NC_000016.10
16	16,154,910	A	T	1	4.23854	9.311	6.314	1	8.882813	0.155217	6.156195	-0.000002	8.06993	7.070058	7.04339	9.13276	9.90229	8.307857	10.811299	coding	NC_000016.10
16	16,154,974	G	A	1	4.031069	1.325	3.373	1	5.054688	1.182807	3.205377	-0.000001	5.62522	5.241301	5.651434	5.601205	6.257982	6.233444	7.213302	coding	NC_000016.10
16	16,155,007	C	G	1	3.495466	7.894	8.864	1	9.039063	2.845057	6.03282	-0.000001	7.51129	8.467827	9.91048	7.812281	9.722863	8.233709	9.20879	coding	NC_000016.10
16	16,155,019	C	T	1	3.834238	7.86	8.864	1	9	4.634712	3.702155	0	7.439697	7.110673	7.822689	6.962516	6.962858	7.695353	7.118707	coding	NC_000016.10
16	16,155,022	C	A	1	3.844269	6.163	7.108	1	8.351563	0.200502	3.554224	0.000003	7.424329	5.235354	7.311936	8.833413	8.925271	10.138633	8.542124	coding	NC_000016.10
16	16,157,742	C	T	0	1.273434	0.194	0.067	0.009	1.789063	-0.696191	-1.379396	0	-1.421211	0.532805	0.340507	2.819175	2.399756	1.888606	2.459107	coding	NC_000016.10
16	16,159,482	C	A	1	6.356412	5.832	8.871	1	10.109375	2.812601	3.253495	-0	0.740672	1.333185	1.589523	2.335301	5.150757	2.675476	8.413059	coding	NC_000016.10
16	16,159,555	C	T	1	4.490552	7.768	8.874	1	5.835938	-0.367123	-0.252604	0.000002	0.156161	3.116465	2.952444	4.645162	5.801181	3.537956	6.133296	coding	NC_000016.10
16	16,163,086	C	G	1	4.062535	7.843	8.885	1	9	0.632057	0.842807	0.000003	7.229965	6.969856	8.484462	5.707487	9.603743	5.18078	9.02507	coding	NC_000016.10
16	16,163,087	G	A	1	3.46566	3.011	0.331	1	4.703125	0.958225	-0.036068	0.000002	3.600603	4.180766	5.965241	3.96819	3.716392	2.723691	3.280315	coding	NC_000016.10
16	16,163,137	G	A	1	4.48007	9.921	8.779	1	4.71875	-1.303311	-1.507619	0.000002	2.207884	2.963209	4.143135	4.552248	3.876285	3.572423	3.33787	coding	NC_000016.10
16	16,163,158	C	G	1	4.476478	6.118	7.071	1	8.492188	-0.583006	-0.502102	0.000004	0.919753	5.549284	8.076604	7.735253	11.170708	11.235311	12.212393	coding	NC_000016.10
16	16,163,159	G	A	1	4.725689	3.367	7.001	1	6.109375	-0.417411	0.152998	0.000001	3.171409	3.549819	4.867904	3.395715	3.05105	5.308005	4.249298	coding	NC_000016.10
16	16,165,741	A	C	1	3.629917	5.885	2.865	1	7.191406	0.421431	0.417846	0.000001	6.07066	5.378729	0.81093	6.74918	7.704172	1.225582	7.663273	coding	NC_000016.10
16	16,169,667	C	T	1	3.933071	4.738	8.783	0.941	4.539063	1.541268	1.367422	-0	2.160991	5.378729	6.570102	3.739508	6.163106	3.248825	5.845125	coding	NC_000016.10
16	16,177,584	C	G	1	3.117253	4.173	5.919	0.993	6.476563	0.937687	3.663164	0.000001	7.206783	6.670027	7.969221	7.699017	6.815068	7.876412	6.936438	coding	NC_000016.10
16	16,177,610	G	A	1	4.160573	9.994	8.672	1	4.554688	-1.393171	1.459698	0.000001	3.545443	4.681637	5.247701	4.126222	3.115563	2.742432	2.653801	coding	NC_000016.10
16	16,177,610	G	C	1	4.176463	9.994	8.672	1	8.476563	-1.669362	2.794875	0.000002	6.453436	6.95953	7.750307	9.6888	7.200824	7.924443	8.021023	coding	NC_000016.10
16	16,178,854	C	A	1	2.62688	6.077	2.861	1	7.226563	-0.003553	5.666716	0.000004	7.109511	7.857813	7.766793	9.647989	7.229093	8.217425	6.935619	coding	NC_000016.10
16	16,178,884	C	T	1	4.102888	7.803	8.683	1	8.265625	3.243085	5.010732	-0.000003	6.501474	6.683636	6.531229	8.009046	5.997433	7.227507	4.772997	coding	NC_000016.10
16	16,178,916	G	T	1	4.234003	9.87	8.578	1	9.8125	4.593655	6.707268	-0	7.342907	8.001097	8.511922	8.872615	6.85483	7.948002	6.809074	coding	NC_000016.10
16	16,178,919	C	T	1	3.737548	6.083	6.934	1	6.96875	2.534512	3.817475	0.000002	6.380825	5.956542	5.437467	4.367469	4.469575	5.040667	3.108454	coding	NC_000016.10
16	16,178,920	G	A	1	4.287366	5.281	3.315	1	7.222656	2.609098	2.532017	0	5.362856	4.776747	3.700452	5.082869	4.570711	4.664602	4.130199	coding	NC_000016.10
16	16,178,934	C	T	1	4.221057	7.803	5.723	1	6.53125	2.342563	3.666579	0.000004	6.28242	5.032778	5.217144	4.930063	3.973944	5.189907	4.385747	coding	NC_000016.10
16	16,182,506	T	C	1	2.819663	3.489	6.341	0.934	5.136719	0.035951	1.309218	0.000001	-0.364974	3.604486	5.915957	5.178174	6.553822	4.163739	6.505158	coding	NC_000016.10
16	16,182,566	T	G	1	3.961774	8.011	6.329	1	9.265625	1.602887	7.25893	0	8.781539	7.907106	8.501651	6.630276	8.296821	5.979599	7.953551	coding	NC_000016.10
16	16,182,878	C	A	1	4.24963	7.899	8.868	1	9.539063	4.573255	5.637381	-0	8.478449	8.781539	8.675558	10.693825	8.712805	10.863858	8.860089	coding	NC_000016.10
16	16,182,887	C	A	1	4.289066	7.899	8.868	1	8.359375	5.070611	5.718515	0.000003	8.446843	8.845664	8.595085	7.397437	8.926913	8.287622	8.732485	coding	NC_000016.10
16	16,185,006	G	T	0	-0.742889	-1.145	-1.16	0	2.048828	2.178617	2.159273	-0.000003	2.101665	2.30845	2.310347	-2.036684	2.117822	-1.165636	2.204584	coding	NC_000016.10
16	16,187,150	A	G	0	0.74667	1.293	4.841	0.02	-3.962891	0.350862	-0.329295	0	-0.956049	-1.154901	-1.073797	-3.350271	-4.136416	-3.547033	-3.787349	coding	NC_000016.10
16	16,187,192	C	G	1	4.408966	6.35	8.817	1	10.6875	-1.065881	-1.330153	0	-0.208755	6.985539	6.437175	6.062967	6.469275	7.169282	6.611412	coding	NC_000016.10
16	16,187,193	G	A	1	4.786784	7.979	8.711	1	7.425781	-0.361242	-0.836883	0.000003	1.1992	4.521789	3.893447	4.045114	3.544769	3.42199	3.907075	coding	NC_000016.10
16	16,190,294	T	C	1	4.339431	7.674	6.322	1	5.59375	0.639809	0.217843	0.000002	4.277164	5.440605	6.963221	5.791168	5.873288	4.715313	5.559352	coding	NC_000016.10
16	16,190,315	A	T	1	3.94271	8.947	6.297	1	9.117188	0.240166	0.390588	-0.000001	4.239284	5.553177	6.616604	8.428968	9.354677	6.18398	9.979904	coding	NC_000016.10
16	16,198,167	T	C	1	3.312905	4.366	3.854	1	5.96875	-0.337494	0.38661	-0	2.057169	4.489815	3.705074	4.542238	5.632714	4.06028	4.954778	coding	NC_000016.10

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