Datasets:

HuggingFaceBio
/

clinvar-vep

Dataset card Data Studio Files Files and versions

Subset (2)

coding · 39.5k rows

Split (1)

test · 39.5k rows

chrom string	pos int64	ref string	alt string	label int64	CADD float64	phyloP-100v float64	phyloP-241m float64	phastCons-100v float64	GPN-MSA float32	NT float64	NT-v2 float64	HyenaDNA float32	Evo2-1B-Base float64	Evo2-7B-Base float64	Evo2-7B float64	GENERator-1B float64	GENERator-3B float64	GENERator-v2-1B float64	GENERator-v2-3B float64	type string	refseq_id string
16	16,203,457	G	C	1	2.552794	2.729	4.024	1	6.523438	0.780919	0.638682	0.000001	0.809219	5.792368	6.144506	8.034528	8.158412	8.808267	8.17402	coding	NC_000016.10
16	16,203,457	G	T	1	2.539793	2.729	4.024	1	6.367188	2.488254	2.435886	-0.000001	2.385557	6.12146	6.548107	8.229027	8.166446	8.851765	7.789006	coding	NC_000016.10
16	16,208,729	T	C	0	0.547052	0.014	-1.292	0.154	1.170898	-0.021074	-0.234686	0.000001	0.281167	0.329687	0.130734	-0.047814	1.357437	0.45222	4.129103	coding	NC_000016.10
16	16,212,193	C	A	1	3.749616	4.983	8.866	1	7.644531	-0.320917	-0.057502	-0.000002	0.157903	0.160582	-0.173569	7.764326	7.350287	8.486847	7.593978	coding	NC_000016.10
16	17,108,900	C	T	0	1.577534	1.254	4.939	0.001	3.884766	-0.648997	-0.433753	0	1.831162	3.523603	2.836576	-2.372608	-0.561534	-2.817306	0.317178	coding	NC_000016.10
16	17,117,688	C	T	0	1.2979	0.67	2.252	0.172	2.0625	-0.754846	-0.883816	0.000002	0.547965	0.340507	0.449698	-2.232221	-0.52499	-1.475826	-1.316714	coding	NC_000016.10
16	17,138,468	G	A	1	4.583183	7.804	8.752	1	8.164063	-1.311099	-0.330919	0.000001	7.789899	7.672628	7.705965	4.965262	8.382951	5.85034	9.008586	coding	NC_000016.10
16	17,141,299	G	A	1	4.07291	2.598	3.423	1	8.46875	0.486006	0.29616	0.000001	7.858745	7.407069	7.937653	6.771991	7.016003	4.892857	6.409948	coding	NC_000016.10
16	19,030,273	G	A	0	1.820715	1.274	6.978	0.973	5.515625	-0.738053	-0.279973	0.000001	0.619535	3.06857	2.173338	6.418456	5.91217	6.1505	7.959196	coding	NC_000016.10
16	19,059,643	G	A	0	-1.352016	-1.569	-0.794	0	-0.112793	-3.727929	-1.862603	0.000003	-1.844934	-1.916214	-1.999929	-1.413034	-2.636759	-1.495299	-3.460845	coding	NC_000016.10
16	19,073,976	C	T	0	2.261655	3.165	2.427	0.091	3.148438	-0.218493	0.062815	0.000002	2.63407	4.449235	3.033223	4.605942	2.546959	4.554967	1.925278	coding	NC_000016.10
16	19,074,000	T	C	1	4.199644	7.698	6.314	0.998	9.132813	0.41446	-0.003773	-0.000004	6.27484	8.72128	8.420526	8.188978	9.955348	8.288321	10.279221	coding	NC_000016.10
16	19,075,775	T	A	1	4.120458	7.702	6.323	1	10.875	-0.457703	0.434093	0	7.405633	8.189149	9.420292	10.255646	13.380712	12.39322	13.725819	coding	NC_000016.10
16	19,116,025	C	T	0	2.368748	0.498	0.409	0.001	3.480469	1.348127	1.413885	-0.000001	-0.283208	2.454536	0.569095	3.663139	3.77017	3.751595	3.613622	coding	NC_000016.10
16	19,250,010	C	G	0	0.191578	0.525	0.758	0.01	1.526367	3.242865	1.516778	-0.000001	2.064251	1.688902	1.882332	1.832729	2.06432	1.89026	1.896746	coding	NC_000016.10
16	19,536,181	C	T	0	0.045827	-0.23	-0.16	0	-1.53125	0.070946	-0.141927	0.000001	-0.007663	1.834319	2.676882	-3.946506	-2.104929	-4.604157	-2.508397	coding	NC_000016.10
16	19,536,425	C	G	0	-0.770216	-1.057	-1.401	0	-2.666016	0.973539	0.262128	0.000001	0.66905	-1.21924	-0.164472	-1.759873	-1.54528	-2.67934	-1.960931	coding	NC_000016.10
16	19,579,122	T	C	0	0.908082	0.513	-0.171	1	2.943359	-0.394353	-0.297422	0	1.265805	1.37071	1.588034	0.773387	1.705574	1.702646	1.657667	coding	NC_000016.10
16	19,682,351	G	A	1	3.198364	9.923	8.755	1	7.902344	-0.796612	-1.14819	0.000003	3.517472	4.484305	4.527487	2.111669	1.605662	1.324535	0.956698	coding	NC_000016.10
16	19,714,953	C	T	0	0.00278	-0.178	0.767	0.034	-3.814453	-1.659472	-1.362525	0.000002	-1.419742	-2.851577	-1.782585	-3.470105	-4.089946	-3.303908	-5.254919	coding	NC_000016.10
16	20,348,252	C	T	1	3.90355	4.661	8.467	0.999	9.453125	4.148977	4.530355	-0.000001	1.289445	4.281306	8.016505	8.895792	9.3161	9.307946	11.2637	coding	NC_000016.10
16	20,348,253	A	G	1	3.934053	3.833	4.443	0.998	8.648438	4.541564	5.013616	-0	3.863832	6.859607	8.845664	7.932521	12.634081	7.508449	10.916676	coding	NC_000016.10
16	20,348,298	A	C	1	3.747811	1.744	5.975	0.081	5.90625	0.983786	3.385833	0.000001	7.079108	4.610868	8.769193	9.126861	9.244527	9.672572	9.799595	coding	NC_000016.10
16	20,348,306	C	T	1	3.665661	2.063	8.417	0.925	6.804688	0.660275	1.019386	0	0.920792	4.674993	6.793069	9.008156	10.935284	8.477503	10.095061	coding	NC_000016.10
16	20,348,447	G	T	1	2.015969	1.422	2.577	0.014	6.976563	-1.569763	-1.495538	0.000001	-2.196413	4.406719	3.794705	6.474123	4.50588	4.98637	3.960211	coding	NC_000016.10
16	20,348,537	C	T	1	3.70018	4.099	6.715	1	9.351563	0.586278	0.40861	-0.000004	8.033998	6.809775	7.866492	7.104477	8.12946	10.039776	8.617004	coding	NC_000016.10
16	20,348,557	G	C	1	2.401717	-0.437	-3.691	0.055	7.816406	-0.148455	0.159934	-0.000001	6.345423	7.907263	8.357208	10.484157	12.621724	10.986049	13.154013	coding	NC_000016.10
16	20,348,558	C	G	1	3.899024	7.838	8.447	1	9.328125	1.069146	1.860837	-0.000002	9.538811	8.469316	8.750956	13.934122	12.364598	13.085762	13.050311	coding	NC_000016.10
16	20,348,650	G	C	1	3.604458	1.228	-0.231	1	10.304688	0.189654	0.599205	0	6.194362	7.200106	7.87523	8.257657	10.914347	9.725086	10.388346	coding	NC_000016.10
16	20,348,652	A	C	1	4.357209	9.009	6.01	1	10.40625	-0.433881	-0.281829	-0.000002	8.088392	8.813088	9.204233	8.737942	11.534016	10.173585	11.296229	coding	NC_000016.10
16	20,348,652	A	G	1	4.432143	9.009	6.01	1	10.15625	-0.208309	-0.199882	-0.000001	8.539934	7.069477	7.034232	7.881365	10.636512	9.06096	10.442621	coding	NC_000016.10
16	20,348,748	G	A	1	3.824192	0.184	3.736	0.994	5.824219	-2.460699	-1.837451	-0.000001	4.533165	7.364661	7.680859	9.278154	9.53657	9.723761	10.05821	coding	NC_000016.10
16	20,348,857	A	C	1	2.291169	-0.352	-3.417	0.006	7.65625	-0.816905	0.032252	-0.000002	0.172752	6.639335	7.456686	6.167975	13.236537	8.003336	13.356967	coding	NC_000016.10
16	20,348,858	C	T	1	3.3277	3.54	8.343	0.601	8.4375	0.482578	2.502694	-0.000004	4.503485	7.459369	7.922772	6.523411	11.996315	7.574233	12.044215	coding	NC_000016.10
16	20,348,918	T	C	1	3.16162	4.367	5.986	0.999	5.753906	3.019728	3.005666	0.000004	4.677677	5.47671	5.514167	6.172932	3.258758	6.254358	4.912635	coding	NC_000016.10
16	20,348,943	A	C	1	3.589619	5.545	5.963	1	9.992188	4.671912	5.262595	-0.000001	6.679722	7.846786	7.822689	8.398176	13.096082	7.689203	13.798986	coding	NC_000016.10
16	20,348,994	C	A	1	2.577369	3.039	5.286	0.023	4.933594	2.345015	5.514453	0	4.830865	7.737414	7.201762	5.709236	7.354048	7.55286	6.294993	coding	NC_000016.10
16	20,349,018	G	A	1	0.317599	0.723	0.627	0.158	3.513672	3.401061	2.836678	0	2.931412	2.591164	2.96033	3.656178	4.863954	3.846699	3.724161	coding	NC_000016.10
16	20,349,020	C	G	1	3.098549	6.105	8.506	1	8.992188	7.60549	8.195343	0.000001	8.61592	8.469316	8.264522	10.576553	10.103208	11.006559	8.929435	coding	NC_000016.10
16	20,349,021	A	C	1	3.400279	7.159	6.058	1	10.164063	6.520171	7.050981	-0	8.794039	8.206952	8.329554	10.896691	12.076837	11.679132	10.184557	coding	NC_000016.10
16	20,349,023	A	G	1	0.296399	-0.932	-0.47	0	1.59082	-0.351358	-0.562294	0.000003	0.050262	0.105361	-2.564949	0.99477	4.609584	2.24338	3.137987	coding	NC_000016.10
16	20,349,025	G	C	1	2.801486	0.974	-0.316	0.776	8.210938	6.120833	6.372946	0	6.734576	8.359657	7.354863	9.224881	12.001825	9.19833	12.752556	coding	NC_000016.10
16	20,349,071	C	T	1	3.131063	2.04	8.506	1	6.410156	4.168865	5.572678	-0.000002	3.855628	7.938688	7.705965	8.114687	9.615766	8.376029	10.277407	coding	NC_000016.10
16	20,349,072	A	G	1	3.471048	4.159	6.023	1	7.917969	5.280045	4.884177	-0.000003	3.305771	8.658937	8.390673	8.588285	10.978144	9.601039	11.4243	coding	NC_000016.10
16	20,359,494	C	T	0	0.245402	0.985	1.553	0.002	-2.324219	-2.188948	-2.213195	-0.000001	-0.864738	-0.799337	-1.034896	-0.826201	-1.223102	-0.90149	-1.719842	coding	NC_000016.10
16	20,411,678	G	A	0	1.017007	1.116	0.839	0.001	-4.101563	-1.739215	-1.385925	0.000003	-2.022031	-3.123987	-3.613189	-2.656043	1.795022	0.523315	1.479282	coding	NC_000016.10
16	20,419,356	G	A	0	1.742394	1.907	2.78	0.832	3.041016	-1.41768	-1.346597	0.000004	0.937601	1.890994	1.834319	0.775323	1.60863	1.128239	1.78311	coding	NC_000016.10
16	20,421,283	A	G	0	-0.463552	0.427	0.271	0.287	-2.333984	2.024554	1.848443	-0.000001	2.052043	-2.057268	-1.546845	-0.533376	-1.857158	-1.359686	-3.545438	coding	NC_000016.10
16	20,429,698	G	A	0	0.440487	-0.022	0.043	0	2.048828	-0.788005	-0.671617	-0.000001	0.071263	-0.602175	1.707076	-0.76783	2.066304	-0.518953	2.761544	coding	NC_000016.10
16	20,465,530	T	C	0	0.184495	0.224	1.681	0	-2.992188	0.130255	0.435308	0.000001	0.492476	-3.037923	-3.528915	-5.111762	-3.953158	-4.135449	-3.803017	coding	NC_000016.10
16	20,480,678	A	G	0	1.875791	5.291	5.24	1	-6.582031	-1.016984	-1.012709	-0.000002	-4.70184	-6.254135	-6.568566	-5.298273	-5.693393	-4.301402	-5.695718	coding	NC_000016.10
16	20,543,260	T	G	0	1.040879	1.225	0.679	1	-4.773438	-0.519148	-0.36312	0	-4.382027	-4.759409	-5.701396	-5.793837	-5.897407	-5.733123	-6.216774	coding	NC_000016.10
16	20,552,206	T	C	0	-1.715716	-1.402	-3.854	0	1.209961	0.226711	0.188193	0.000002	1.362051	1.696891	1.355835	-4.899307	-4.422776	-4.996265	-3.693053	coding	NC_000016.10
16	20,737,873	G	A	1	3.855157	6.481	8.795	1	6.660156	-0.474764	-0.308001	-0	7.851676	7.168382	6.806768	8.321785	6.445367	8.300235	7.655274	coding	NC_000016.10
16	20,785,065	G	C	0	1.652068	-0.057	1.564	0.003	4.148438	0.148901	0.164252	0	0.682838	0.844118	4.658839	4.94087	3.910965	2.889371	3.95159	coding	NC_000016.10
16	20,790,850	C	T	0	1.948717	-1.278	-0.073	0	1.046875	-0.418071	-0.433748	0.000001	-0.565523	-0.660536	-0.507341	-0.698557	2.844417	-0.222029	3.066153	coding	NC_000016.10
16	20,798,745	T	C	0	0.802106	-0.018	-0.428	0	1.773438	1.231109	0.843778	-0.000001	0.957299	0.615496	1.324303	0.442888	2.197404	1.468899	2.55665	coding	NC_000016.10
16	20,798,944	T	C	0	-0.827873	-1.658	-0.538	0	1.582031	0.296502	0.436255	-0.000002	0.129571	-0.080689	1.144381	0.308582	3.256941	0.818719	2.903069	coding	NC_000016.10
16	20,948,596	G	A	0	3.586455	0.948	1.502	1	5.050781	-0.427991	0.84744	0.000002	2.511373	5.685668	5.517007	4.398617	3.342092	4.162828	3.060976	coding	NC_000016.10
16	20,954,951	G	A	0	4.419349	7.998	8.796	1	7.550781	-0.140046	0.087513	0.000005	4.546649	4.258967	4.410198	4.418214	4.065257	4.397741	4.211272	coding	NC_000016.10
16	20,955,040	T	C	0	4.300509	5.925	6.36	1	8.523438	0.480941	0.751193	0.000002	3.985036	5.962477	7.493043	6.790259	7.470018	6.878403	6.904325	coding	NC_000016.10
16	20,965,038	T	G	0	3.43521	3.271	1.844	1	7.84375	4.278666	4.195239	0.000001	7.73537	6.608843	5.672691	5.450424	6.734917	6.1748	6.421003	coding	NC_000016.10
16	20,969,840	T	C	0	0.545475	1.384	5.856	0.856	-2.550781	0.345209	0.294109	-0	-0.472906	-2.092746	-2.461869	-2.139582	-0.518679	-2.392498	-0.779941	coding	NC_000016.10
16	21,039,887	G	C	0	3.001489	0.54	1.247	0.999	6.660156	0.561882	0.749749	0	1.475907	4.102794	7.344004	5.702349	7.005925	5.845371	5.237355	coding	NC_000016.10
16	21,140,592	G	T	0	1.007436	0.931	4.069	0.964	4.296875	-0.225068	-0.47601	-0.000002	-0.134478	2.686699	2.08406	-0.491035	-0.37622	-0.517371	-0.303516	coding	NC_000016.10
16	21,174,063	G	A	0	1.788644	1.196	1.064	1	2.898438	0.969656	0.909504	-0.000002	0.24153	5.744107	5.41656	3.062583	3.626446	-1.19774	2.688276	coding	NC_000016.10
16	21,202,276	C	G	1	3.320819	5.875	7.106	1	9.429688	0.042009	-0.475364	0	3.157769	8.090709	3.62396	9.804992	13.054618	11.073888	11.19553	coding	NC_000016.10
16	21,211,351	C	A	0	-0.000259	0.652	0.437	0.011	-4.679688	-0.3152	-0.313421	-0.000001	-0.600488	-0.283944	-0.412245	-1.968527	-5.783539	2.101262	-5.089703	coding	NC_000016.10
16	21,258,785	T	G	1	2.949012	2.993	3.732	1	5.21875	0.330077	0.318273	0.000001	0.142563	0.668933	0.029853	0.75702	0.734504	1.001225	0.846501	coding	NC_000016.10
16	21,678,558	T	A	0	2.839898	2.415	2.248	0.999	6.589844	0.641613	0.745926	-0	0.61356	0.886586	0.621884	0.71295	0.762444	0.801338	0.964594	coding	NC_000016.10
16	21,705,213	A	T	1	4.429012	6.705	4.665	1	8.351563	1.012782	1.131273	-0.000002	1.206409	2.880342	6.337992	8.232889	8.908493	8.097589	8.90416	coding	NC_000016.10
16	21,843,398	G	C	0	0.576313	-0.582	0	0.001	6.320313	-0.216614	0.09299	-0.000001	0.174803	3.761857	1.175305	0.13133	4.890513	2.376579	4.823828	coding	NC_000016.10
16	21,958,590	G	A	1	4.185738	9.02	8.762	1	7.910156	-0.270787	-0.704971	0.000002	4.8438	5.164405	7.01591	6.238744	5.839452	5.280221	6.298249	coding	NC_000016.10
16	21,965,440	C	T	1	3.205229	1.199	1.972	1	5.691406	-0.136713	-0.030532	0.000003	-1.034254	5.657973	3.209947	6.502895	5.002087	5.987475	6.887166	coding	NC_000016.10
16	21,968,680	G	C	1	4.192511	9.064	8.626	1	9.46875	-0.045042	-0.357926	0.000003	-0.024571	5.940365	2.103083	7.825055	9.296102	6.098838	8.92011	coding	NC_000016.10
16	21,971,615	G	A	0	1.797852	1.965	2.745	1	3.066406	-1.938696	-1.539554	0.000001	-1.648659	1.874647	3.993977	2.040012	3.399118	2.998217	3.159397	coding	NC_000016.10
16	21,983,090	G	A	0	1.351321	0.672	0.55	1	-0.48584	-2.921684	-2.573962	0.000003	-2.554241	-0.838564	-1.129795	-1.780151	1.394176	-2.109528	1.767114	coding	NC_000016.10
16	22,126,282	G	A	0	-0.873751	-1.866	-0.272	0	2.316406	-0.35442	0.616386	-0	3.775158	0.728993	2.491507	2.303915	-0.120345	1.267184	-0.474089	coding	NC_000016.10
16	22,132,997	C	T	0	-1.210962	-1.756	-4.19	0	2.667969	-0.241841	-0.663805	-0.000002	0.713598	3.613832	2.627521	1.522118	1.662157	0.30193	2.250587	coding	NC_000016.10
16	22,144,308	A	G	0	-0.019887	0.742	-1.932	0.004	1.191406	-0.135143	-0.002257	0.000003	-0.474094	-0.459308	-0.467808	-0.535332	2.578658	-0.437176	2.087151	coding	NC_000016.10
16	22,166,935	G	A	0	2.405557	-0.011	-0.484	0	1.836914	-0.466822	-1.0756	0.000001	0.045557	1.284016	0.923259	-0.102685	1.970839	0.309398	1.256099	coding	NC_000016.10
16	22,181,575	G	A	0	3.345473	7.774	8.765	1	8.117188	2.074579	2.528054	-0.000002	4.760363	5.454891	5.04703	4.787412	5.497547	5.53972	5.582647	coding	NC_000016.10
16	22,225,797	A	G	0	-0.325998	-0.045	-1.582	0	2.337891	0.028387	0.374782	0	0.584607	2.449661	1.249372	0.673172	3.491823	1.915	3.324852	coding	NC_000016.10
16	23,069,313	C	A	0	3.022227	1.896	4.959	0.929	7.015625	0.800722	0.611278	-0.000001	5.249231	5.734754	6.826899	7.667312	6.223025	8.114685	7.436347	coding	NC_000016.10
16	23,087,101	A	G	0	1.662583	6.457	7.027	1	-6.507813	0.065522	-0.2117	-0.000001	-1.27924	-5.32046	-6.772867	-5.869768	-7.297778	-9.824713	-8.65751	coding	NC_000016.10
16	23,367,942	A	G	1	2.389731	6.821	4.608	1	7.410156	0.879556	0.443969	0.000002	0.474094	5.882434	5.071245	3.921427	6.389086	4.033618	6.261916	coding	NC_000016.10
16	23,371,836	C	A	1	1.953714	3.95	5.867	0.964	6.535156	-0.918016	-0.47221	0.000001	1.893339	5.306888	4.647998	2.69513	5.372808	3.202355	5.368447	coding	NC_000016.10
16	23,380,493	G	A	1	4.267218	7.327	8.777	1	7.8125	-0.590756	-0.363266	0.000002	7.158529	7.851676	7.938688	7.792165	9.524273	8.364214	10.51206	coding	NC_000016.10
16	23,380,725	C	G	1	3.393007	6.004	8.798	1	11.171875	0.881175	1.24006	-0.000001	4.6264	8.235322	8.530225	7.614697	11.912682	7.878709	11.914397	coding	NC_000016.10
16	23,380,725	C	T	1	3.494978	6.004	8.798	1	8.15625	0.206295	0.438745	-0.000002	3.714091	6.695906	7.358655	4.245413	9.276423	6.034463	8.882321	coding	NC_000016.10
16	23,380,727	C	T	1	3.258136	6.004	8.798	0.999	9.460938	1.922039	1.602378	-0	4.351514	7.433224	7.452769	6.873169	12.566507	7.95797	11.557081	coding	NC_000016.10
16	23,380,728	C	T	1	3.474368	6.004	8.798	0.999	9.9375	0.893572	0.256635	-0	2.491596	6.971318	7.096752	7.351725	11.751634	8.566397	12.154519	coding	NC_000016.10
16	23,380,730	C	T	1	3.267973	6.004	8.798	1	9.210938	0.480127	0.571155	-0.000001	3.256015	7.250903	6.889239	5.358803	8.710345	6.764253	8.729426	coding	NC_000016.10
16	23,380,736	T	C	1	3.681044	5.738	4.68	1	10.445313	-1.009497	-0.718565	0.000003	6.991852	8.126371	7.928049	8.555059	12.154602	10.222445	12.21842	coding	NC_000016.10
16	23,398,119	G	A	0	3.013913	5.618	5.852	1	2.878906	-1.662891	-1.750099	0.000002	-0.094139	2.148753	3.494368	4.643344	3.288803	4.591722	4.740932	coding	NC_000016.10
16	23,452,994	T	C	1	3.426511	7.113	6.32	1	10.414063	2.423986	2.881681	0	7.578809	6.955188	6.939315	9.158916	9.357091	6.800657	9.449995	coding	NC_000016.10
16	23,478,390	C	G	0	0.856819	0.685	0.918	0.93	-3.722656	-0.442485	-0.695674	0.000001	-0.446287	-2.680037	-0.165985	-3.249657	-6.148826	-2.919607	-6.511286	coding	NC_000016.10
16	23,525,210	C	T	0	1.035398	-0.249	0.22	0	1.418945	-0.136288	0.058673	-0.000001	-0.111226	-0.269563	-0.207639	-0.221153	-0.206444	-0.18586	0.854769	coding	NC_000016.10
16	23,525,363	T	C	0	0.118189	-0.758	0.722	0	-1.636719	-0.019088	-0.107977	-0.000001	-0.62126	-3.528387	-2.780957	-3.732141	-4.920589	-3.631451	-4.66801	coding	NC_000016.10
16	23,535,344	T	C	1	4.219504	4.345	2.954	1	5.324219	-0.694007	-0.141191	-0.000002	4.702995	3.616559	3.442746	5.366163	3.252736	2.812155	2.811395	coding	NC_000016.10

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