id int64 | subtask string | question string | options list | answer_index int64 | answer_text string | metadata string |
|---|---|---|---|---|---|---|
1 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: CAACAAGGGAACTTCTCTCCCACGGGTTCAGCAATCTGACCCAAACTCCATAGCCCCAGACAATCTGAATACACACATGCAAGTGTAAATATGCCCCAGTTTTCCCAGGAAGCAGGAAAATCTACACAGCCTCAATGAAGAGCACTATTTTGGACTGTTGTTGTCTACCCACCCTCTCCAGGGCTTTAATT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
2 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K27me3 modification?
Sequence: GGATTATTTGTCATGCACTGTGCTAATCCCTGGGAATCCAGGAGGGAGTAATGCAGATATTGTTCTTGCTATCTTTAATCTCACATTCTAGAAAGATGAGGGCATGCCAGAAACAAAGTAAACTGATACACAAGTAGTTATGGATTGGAGGAAGCGTCATAGAGGAAAGAAACAGGGTAGTATACTACAGATAGTAAGGGACATGCTCATTGGCTTCTGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K27me3", "truth": "H3K4me1"} |
3 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: GTAGGTTTGACCCAAGGGCCAGTGGATGGCATTGGCAGGTAGGAGACAGCTGCCACACAAGCAAGTGTATGGACCTGATCTTTGTTTACTATAAAGTGCCCTCTGTTGTTTCAGTTGTAGGGCTGAACAGTGGAGTGCCCAGTGCCCTGAACTTCCTATTCCCTGTGGGTGCTGGAACACATCTGTGCAGA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
4 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: AGTACTGTTCATGCATTCATTCAACCCGCATCGTGCCACGCATCACAGTGGGTACCCCAACATGAACTAGGCAGGGTTCCTGTCCTGAGAAGTTCCCAGCCTAGCTGGTGAGGAGACCCACTCCTAAGCAGACCATGGCCGCCTTGCGAGTCAGTTTCTCCATCTGTTTTGGGTCCATTCTCTAGTGCTTCTCCTCGAAAATGCTGAGAGAGAGAGGATCAGATTGAATGGGTGCAACACCACGCGGTAGAAACAGCCCCCTT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H3K4me1"} |
5 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me3?
Sequence: ACCATCTACGCATCGTCTGATTCTCAAGGGGGTGAGCATTTTTCTTTGCCTTTGAGCTATTTTACAACTCTGTCTATTGTAAGTAGCCCGTAGGAATGCAACATACTTCTTGTCTACAGACAAGCAGATTCTGTCCTGTCCTGTTCAAGTCCAGTGGACTCTCCTTCCCAACTGTGGAAGAAGCCAGTGTTACCTCTGTGCACATTCATTTCA... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K9ac"} |
6 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: AGAAAGAAAGTAAAGTAAAGTAAAGTAAAAAGAAAGAGAGACTCTGGCAAGTAAGAAAGAAAGAAAAAGAAAGAGAAAGAAAGAAAGGAACAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
7 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GCCCCTGGGCAGTGGGCATGGTGTGAGCAATAGCTGTAGCAGTGCTAGGATGATTCTCTGGGTCCTGGATGGTGTGCATTGATGTCGGCAGTAGCTGTGATGGGCTGAGCTAGCCAGTCTGCAGGACTGCAGATGGTACCTGCAGGTAGGTATCAACTGAGGTGGTAGTGGCTGGGAGTTGAGGCCCAACCTCAGGCCTCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
8 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: AGAGGTAACTGCTGAGTTAAATTTGATGACTTCAAGGTGGAGGTGACCTTGAAGCTGGGCCTTGAAAGGTATGCAGGATCTTATTTTTTGGAATACAAATAAATGAGAAATAATATTCCACAGCAGGCTCTTTCTCCCCAATGCCCTTCTTCTCATGTGTATTCATGAAAAAGTTAGAAATTAATTAGAAAGATATATGAT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
9 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence CAGGATCGCACAACATTCCCTTGTTGTTCTCAGGATGCCTCTGAACTCCGATCCTTGAATGTTTTGCTCCAATTCATGCTGAATTTCTTGAATGGCCCCCAGCACACCGGTGCCATGTTACTTCCTACTTCTGAGCCTTGGCCCATGCTGTTTTCTCTGCCCAGACTGCCCTTCCAACATCCACTGCTCTTGGAAAACTTCTGCTCATCCCCTAAGACACTGCGCAGGACTCTTTCTCTGAGATGTTCACTTCACTCTGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
10 | 4_histone_marks | Sequence: ACAGGGGTTTGGTGTACAGATTGCTTTGTCACCCAGGTACTAAGCATAGTACCTGACAGGCATTTTTTTCTGATCCTTTCCCTCCTCCCACCCCCCACCCTCAAGTAGGCCCTAGTATCTGTTGTTGCCGTCTTTGTGTCCATGAGTTCTCGTTATTTAGCTCCCAGTTATAAGTGAGAACAGGTGGTATTGGGTTTCCTGTTCCTGTGTTAGTTTGCTAAGGACAATGGCCTCCAGCTCCATCCATGTTGCTGCAAAGTACATGATTTCATATGCTGTGGTGTACATGTACTATCCAGTCTACTACAGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
11 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CCCATTCACTTTTGAACAAGTTATAATGAAATTGCTTTCATCAAGATCACCAATTACCTCCTCCTTCACTACTAATCCAAGATCGTTTCATAGTCCTCATTTTACTTGTCCTATCAGCAGCCCATTACTTTCTTCTCCGTAAAATGCTTTGTCCACTTGGCTTCCAGGACACTGCACTCACCTGATTTTCCACCTACCT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
12 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: ACACATTAGACAGAACACAGGGACTACACTAACTCAAACACTGCCGATCAGAGCTCAACGTAAATGCATTATAAATTATCTTTTCACTAGCTAATCTTAGATCCTTGGGTTCTTGGGAGTATGGCAGAATCACACTTATCAGAAGGTCTCAAGGGACACATAAAACTTTCAAATACATGAGGATTTGGATAAGAAGGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
13 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: AATGCATGCCTGCACCTGGGTTTGCTTCCCAGAAAGGCTCATCCTAGGAAGCAGGTTGCACTTCCTCCTATGCCCACCTGGCCCAGAGTCCACTTCCATCTGCACCATCTCAGCACCTGCAACCAGCAGTACCACTCTATAGTTTTGTGCAAGTTTTAATATCCCCAGAGGCAACTTTCCAAAGTAGAATTGTTGCCTGGGCTGTCTAGGTTTTCTCTGAAGGCACCAATTACTGTTTTTATTAGTGCTCTATTACCGAGTTG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
14 | 4_histone_marks | Is H2AFZ the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: TGGGAACAGGGCTTGGCTTCAGCTCACTCCCACTGGAGCATTCTTCCATGCATTCCCAGTGATCACAAACCCCACTCCACTGCCTCATTGATGCCATAATGTTTAACCACGCCTTTTACTTAAGGAATGCCAAGAACTGGCTTTAGGAAATCCAAATATGAAACCAAGGTTGTGGCGTGTTCCACCCTGGGAAGGAATGCTGAGCAACTGATTTATAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H2AFZ", "truth": "H2AFZ"} |
15 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TTCTGGTCTAGCAAGAGGTCTGTGCTCTTCCTAACTTTCTTTAGTGACTTCCGAGTGTGAGATGCCTCTTGGGAACTGCCAGGCAGAGGATTGGTCAGTCTTCCTCTGGAGGTTCAGGGATTAGTAAATGGTAGCCCACGGGAAAAATCCAGACAGCTGCCTGTGTTTGTAGATAAAGTTTTATTGGTGCATAGCTGCAGTTTTTCCTTTGGGATTGTCCTAACTGCTT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
16 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence TGTGAAAACAGTCGGCAGCTCCTGCGGGGATCATTCATTCAGGCCTGTAACACAAAACTATTGCCAATGGGCACCTGCTGGGGCAGCTTCCCGGGAGGGCTGGGAGGAAGATACCAAACTCATCAGGCATCTGTGGAGATAAGAGCGGCAGGGGATCCACTGGGATCCCGCTAATCAGGCCTGCACTTAGACCCCACTGCCTGGCCAACAGGCTGGTGTCAGAATGTATTAGGCAGCCCTGGCCAGGATAGGATGTGAGC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
17 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GGTGGAAACAAAACAGCAGCAGCATGGTCTGCCCAGAGTTCTGGCAGTGCTGGGCTAAGGCCACACCTGCAGGAAGCCACCTGCCTCTATCTGCCTTGTCTCCCACTTTGAGATAATTAAGCTTGCCTGCCAGCAGGCAGTCACTTCTTTTATTGCCTTCTTCCTCAGTGAACTCTGGCAGTAAAACCGGTTGGATAACCATTGGCAAGCTCTCAAAAGTTGACTGTTAGTTGCAGCTCGGATGTGGAGGGTGTAAGTTTCCG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
18 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: GCTCACTCATCCATCTATCTACAAACCAGCCCCGCACCTAGCATCACCCACTGCTAACGTGCTCATCCATCCATGTACACGCCAGCCCTGTGCTGAGCCTTCTCTCTGGGCCAGCTTCAGAGGAATCACCAGTTTCTGAGTTCTCAGGGGGCCTTCTAATGGAGGGAGCCCCGAAAATGGCCTTTGTCCACAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
19 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K27ac?
Sequence: CCTACTGACCTGCAAAGCCTAAAATATTTAGTGTCTGATCTGTTACAGAAAGTTTGTTAACCCTTGATCTAGAGAACCGTATTCATTTTCTATTACTGCATAACAAATTGCCACAAATTTAGTAGCTTAAAACAATGCCCACATTTATTAGCCCACAGTTTCCATGGATAAGTAGGCTGAGGACAGCTTAGCTGGGTCCTCTGCATAGAGTCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
20 | 4_histone_marks | Sequence: CCTTCCAGCCACGCTGGGAACCTGCACGGGGTGGGAAGGTCCTTCCCGCCTGGGTTACAGGAGGGCACCGGGAGCCCGGGAGAGACAAGGGCAAGGGACAGATGGCATTCGGCCACTCAGCAGGGCCCCACAGCCTCTCGAGGCCTCAGGAATTTTTCGGTGACGTGCAAAGTGCAGACCAAAGCCGCCAACAGGGCGTCTTGGCGGACTCTGTTTTAAATTATTCACCAACCCGGCCGGGCGCGGGGGCCCACGCCTGTCATCCCAGCACCTGGGAGGCCGAGGCGGGCGGATCCCGAGGTCAGGAGAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
21 | 4_histone_marks | Sequence: GTTCTGTGGGCAACTGGGAAGTTGGAAACTGAATATGGTGAAAATGATCCCGTCACTATTCCTAGGAGCGTGGCTGTCTCCTCAGCACTCACGAGTGTGTGGTGTAGTAGGGGGCGGGGCTGTGGTGACTGCGAGGGAGGTCACAGGAGAGCTTATGCGGCGTCTGGGAGGCCCCTTGGTGTCCACTCCTAGTTGTGTGGTTCATGGGGCCTCGAGTTTTGTAGTTTGAAGATGACTCCCAAACTGACCCTGAGAATGAGTCCAACGGCAGGTGACACCCAGCTGCAAGAGGCTGTATCCTGAGATTGGA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
22 | 4_histone_marks | Sequence: GCGCTCCAGTGTCAGTCCCGGAGAGAACGCCGGTGGCGGGGCTGGTAGCCCGGCAGCCGCAGGTGGGGCCACGAGCGCTGGCTGAGGGACCGAGCCGGAGAGCCCCGGAGCCCCCGTAACCCGCGCGGGGAGCGCCCAGGATGCCGCGCGGGGACTCGGAGCAGGTGCGCTACTGCGCGCGCTTCTCCTACCTCTGGCTCAAGTTTTCACTTATCATCTATTCCACCGTGTTCTGGGTGAGTGACCCCAGTAGGGCCCGGGGATGGGGGTGGGGACCCACAATCCGGCCGCCCCCTCACTGGCCCGGGGT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
23 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GGAGATAATTAACTGTGGCTTGAGGTAGTGGAGAAGGACCTTTTTATCATTAGAAGTTTAGTGGATCCTCCGGGCAGTTTTCCACTGGGAAGTGGGATCTGGCTGTAAAAGAGTTTAAATGCCACATGCCTCATACAGAAGCATGAGAAAAACGTTAATGCTGCAGCTTCTCCACTGTCTGAGTATCAAAATTCCATTTCT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
24 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: GCAAGAATGAATGAAGGGCAGGGTCTGCGATGTGGACCCAATGAAACTGAAACCAAAGGACTTTTTATCTTTAACGTAGAGAAGAAAGAGTTTAAATAGAGGCAACTTGACAGCAAAGATTTGTTAGCTTTGGGCCTGGGTTTGGGGTCATAAGTTTGCTCTCTTGGCTTAGCTATTGATCAAACGGAGGT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
25 | 4_histone_marks | Sequence: GGACATTTGCTTTCTTTTCCTTTGGGTAAATAGGAGCAGGATCGCTGGTCATATGGTAGCTGTCGATGACACTTGAGTCTTAAGGGCTGCTGTTTGGGGAACTGGAGACATAATCTTGGGCCTATGAGTAGACAGGGACTTGGAATTCAGACTGCCCTATAAAGCTAAGATCATTGATTGGCTACACTTTGAGCAAAATGATAGACTAGAAAGAATAAGCTGTTGGCAGAATATTTAAAAAAGAAACTTGCCAGGCACGGTGGCTCATGCCTGTGATTCTAGCACTTTGGAAGGCTGAGGTGGGCGGATT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
26 | 4_histone_marks | Sequence: ATACTTCTAGGAGATGTCTCCTTTTATTTATACAAACATACACACCGAACTGGAACGTAATTTGAAGTTGGGAGGTGGAAAACTAAAGGTCAAAAAGGGAAGAAAGCAAAAACGTCCCTTGCACACTTCAGCCCGCAGACCCCAAGGAGGGGCGCGAGGTCCTCAGAACCGGAAAGGCTAGCACTGGATGGGTCCCCGCAGCCCCGCGCCGCTGCGCCGCAGCCTCCGGAAGACAGGGGACGCTGTGGCGCCGGGCGGGGCGCCCTCCGCCGCTCTCTCTAGCAGGCGGGGCGGCGAAGCGGGGCGGGGC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
27 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence CAATGTGCCTTTGGAGGTCATACATTAGCTTCAGTTTCTTCATCACTTTCATTATCAGAAATGAAATGAGAATTGTGTCAGATGGTATTTATGGTTCTTTTCAACTCTAGATGGATACACACATCTAGGGAATAATAACTCCTCCCCCCCACCATTTTCCAGAAAGAAGGAATTCTACCTTCTTCATCAAGTCCACCGATGATGTTGTAAACATAGTATGGAAAGAAGCGCCTTGAATACAGGATTGTAGACAGC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H4K20me1", "truth": "H4K20me1"} |
28 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GGTCTAATCTCTATCAGTTAGACTTCAACTCAGGATCTATTGATGCCAAGCATTCCTTTGGCAGCATGGAGCTGCTGTGCCACTCAGCTATGCCTTCAAGATAACCTGCTGTGAAGAGTGTAATTAACTGACAGCCTTTGGCATCTGCTGCAGCATTCATTCTATGAGTCTCTGTTCTGTCTAGGCAGCTCCAGTCAATGAAAGGGCACAGAGAGGATACTGGAGCTGGGCCATTCCTCCCCAGTGCCAGATACTCTAATAGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
29 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: TCCTCCTCTTGGGGCAACGGCTCTGGGCTGAAGGCAGATGGTAATACTTGGCACAGGGCTCCCATAAATGGAGCTGTCCCAAGGCCCCTTCCAGACAGATCCATCCCACTGCCAGCTCACTGCATCTGGCAGCTCACCTGAGGCTCTGAGCTGGGAAGGTCAACGTCCCCTCCTCAGGTTCCTTCAGTCCCAGCTCCATTG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
30 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: TAATCCTAGTAAACTCCATGTGAGTTAGGCAGGCACTTCCCCTGATAAATTGAAAAATGGGACACAGAAAGACTTAAGTTATTTGTCCAGAGTTCCCAGGGTTGACAACTGATAAAAGACCCTGAATGGGAGCTGTGACCTGGGTTCTAGTTCTAATTCCAGCGTTATCCACAAAAACCACATAACTTCTAATATCACAACCAGACTACTCTGGATTTTAATACTCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
31 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CTTCCTTCCTTCCTTCCTTGCTTCCTTCCCTCCTTCCCTCCTTCCTTCCGATACTCATTGTTGAGGGAGTGGTGAAAGGGTATTCTCAAGCACAGCTGGTAGTTGTGTGAGCTGGCACGGCTTTTCTGGAGGGCAATTTGGCAGACTGTATTTAAAAATTCTAAAGACACGCACTGTTTTTGATCCCGCAATTCTACTTCTAGGGATTTCTCCTAAGGAAATAATTAGA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
32 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: AGCACTATTTAAATGTGAGGTATGATTATTCATTCATTCATTTAACAGGTCTTTGTGGAATGCCTATCATAAGTCAGGCACTGTGCAAGGCACTAAATATACTATTGAACAAGCTTAAACACCTGCCCTCAAGGAGCTTATGGTCTAATGGGAGGAGAGAGGGAAGAAAATAGATCGATATAATATCACATGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
33 | 4_histone_marks | Can you confirm that the K562 DNA sequence GCAATGAAAGAGTAGAGAAAGGCAGTCAATATATGGCACCATTTTAATATGCTTGCTTCCCCGTCAGCCAGCCCTCACCCCTGGCCACAGCCTGGCCTGTTGCCAGACTGGTTTCCTGATCAGAACCCATCTACCCTCTGCTTAGACTAGGAGTGTGTGTGCATAATTTATTCATGTGGGTACACAGCATGCATAACATGACTTTCTCTTTTTAACTCACACCAGTCAGGCTTTCACATCTTTACCAAGACTCCTCTTATCAAGTCATCAGTGAACT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K4me1"} |
34 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K27me3 signature. Is this correct?
Sequence: GCTCATTTTTATTGCTCTTTGTTCTCTACTGATTCTGTCAGTTTTTAGAGCCCATAAAATAGCTTCATTTCTATACCGTCTTATTCACATTCAGATTTTTCATATAGCATGTCACACACAGTATAAGACATTTTCCATAACATATTATGAGTTGATGATTTCTGTCATGTTGAAGAAGATCATACAGCAACACTTATCTT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
35 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TGTGACTGGGCCAATATATAGTTAGAAGTAGTAAGTGGGAGATGCTGACATAATCTCATGATGAGTTTGTATGTGTTTGCTGATTGCTAAAGAAAATAGGTTGACACCAACTTAGAATAAATTGATGCCGATTTCTAGCACTTCATCAGAGGCAAGAATTTATGCAGGTGGAGCAGACGAAATCAAGGACTTTGTCAGGGCTTGGCAAGAATGGATTGGGTATGCTGGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
36 | 4_histone_marks | Is H3K27ac the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CAATATCTTTACATTCTTGGAGCTTCAATTTTTCATATCTATTTTAGTCTGCTAGGGCTGCCGTGACAAAATGCCATAAACCTGGTGGCTTGAAAGGCAGATTTCTTTTTTCCCAACAGTTCTAGAGACTAGAAGTTCATGATCAAGGCCCTGGCTCTTCCTGTTCCTGAGGAGGGCCTTTTCCTGACTTACTTACAGATGTATACTTTCTTGCTG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
37 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: ATCAGCAGAGCTCCGGACGTGGGAAGGAGCTTGACTCTGCGAAGGAACTGGAAGAAGACCTGTGTAACTGCAGGGTCAAGAGCTGGGAGAGGTAGGTGGGGGCAGATGGTGCCGGGTCTGGCTGGCGGTGAGGAGGAGGCTGGGACTTGGAACACCTGCCTTTTGGAGCTGTTGAAAGAATCAAATGAGCTCAGTCATTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
38 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GAATATATATATATCTTTTATCAATATATAAGTGCCCTTATATAAGATGCAGGCATTACCCTCTCCCAAACTGCACCTCCATCCTCAGTGGTAGTGGGCTTTCCTCTCTGCTTTCTGCTCCAGGTAGGCAGAGAAAGAAAACAGGGTGCCACGCTAAGCCACTAATCTTCTGGTGCCTCTGCCTTGACTACCTTGAGATCTATGATTCTAAATGACTCTCTCCATAGGTGAGGGCGGCCCTAAGGCCTTCCTCTATCCCTCAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
39 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K27me3 signature. Is this correct?
Sequence: GTGAGCAACTTGCACAACCACATATGGATCTCTAGACATTATCCCTGATGTTACCCCAGGAGAAATGTCACCTACTTCTAGAAGCTGCTAATACATCTAACATTCTTGTAATCTGTATACTAAAGATGTAAACTTACCACATACCATAGCCCCTATTTCAGATTTCTCTTGATGCCATCCATATCCTCTTAATACATCCC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
40 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TCAGCACTTCTGATTCTCTGGCCTCCAGATTATGACTGTGACTTACACCATCGGCCTCTCTGGATCTCAGGCCTTCCAGTTTGGACTGGAATTACACCACCAGCTTTCCTGGGCCTTCAGCTTGCAAACAGGTGATTGTGGGACTCTTCAGCCTCCATAATCACACGAGCCAATCCCTCATAATAAACCTTTCCTGGCCAGGCGTGGTGGCTCATGCCTGTAATCCCAA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
41 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: ACACAAACTATGTCAAGGAATTTGAGTCAAATACTGTCACAATGTCCATTCTACAGATGAAGAAAAGGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGACTCGCTTGAAC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
42 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence TTAAGTTTTAAAATTATGCCCTGGCTGTTCTGACTACTCTCCAATGGCTTTCCAGTGGTTGGAAGTGTGCCAGATGCGACCTGCGAGAAAACCTCTGGTTGAATCTGACTGACGGCTCTGTCCTGTGTGGAAAGTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGCTGGAGCATTACAGAGACATGGGCTACCCACTAGCCGTGAAACTGGGAACCATCACTCCTGACGGGGCAGGTGAGTGCGCCTTTACCGAC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K27me3"} |
43 | 4_histone_marks | Is H3K36me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: AGCAGAATTTTGAAGTCGTTTCAGTTAGTACTATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACCACTATATCACTTGCTCAGACAAAGTAATGTCAAGAAGTGGATCAGATAGCTCCGTGGGTGCTCGAGCATGCTTTGGGGGACTCTTTGCCAATCTTATTCGTCCGGGTGATGCAAAAGCAGTTTGTGGCGAAATGACAAGAGAT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
44 | 4_histone_marks | Sequence: CAGTAAAGGGTATGTCTCATGTACCATGCTGCTGTGGTCTGAATGTGTCTCCCCAAAATTCATATGTTGAACTTCTAACCCCAAAGTAAGAGTATTAGGAGGTGGAGCCTTTGGAGAGATGATTAGGTCACGAGAACAGAGCTTTCATGAATGAGATTACTGCCCTTATAAAATAGGCCCAAGGGAGCCTGCTTGCCCCTTCCTGCATGTGAGGACACAGTGAGAGGGTGCCATCTATGAGCATGGAGAGCTTAGCTTGGACAGCCAGCTGATGAGGGACACATCGAATCAAGATACATGACATGGTGAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
45 | 4_histone_marks | Sequence: AGCCAGCCCAAAATGTCATGAAGATTTATGGACGAAAGTAGAGAGGACTAATGAACTCAGATACTCCTTCTGTCCAAACTGACTACATGCAAGTTCATCTCCCAAAAGTGTAGAGTGAGGCTATTGGCCTCACAAGACATATAGTAAGTATGTGGTTGATACCTCAGGCTCAAAATTACAATTCTGGTTCTGCTGTTCACTGACTTTGTGATCTTGCATAGGTCGTTTAAACCCTCAGAGCTCTGGTTCTTTATCTGCAATGACAAAATAACAATTGTCACTAATGTTGTTATAAAGGTCAACTGATATA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
46 | 4_histone_marks | I have a DNA sequence CTGAATAGCGTGATGAAATCTCGTCCGTCCCACTCAGTCCCGCCCGGGATGTGAATCCTCCCTTTGTCCAGCGTCTGCACACTGTAGACGCTCCCATTCGTCAGTTAGCAGCCAGATCCGTTATCAGATCAACTGTCATGGTATCGCAGTGCTGGTGTTCAAGGAACCCTTATTTTACTTAACAATGGGCCCAAAGCAAAAGAATAGTGATGCTGGCATATTGTTATAATTGTTCTATGTTATTATTATTGTTGTTAATCACTTACTGTGCCTAATTTATACATTAAACTTTATCAGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H3K4me1"} |
47 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GAGGCAGGAGGATCACTTGAGCTCAGAAGTTCAAGGTTACCGTGAGCAATGTTCACGCCACTGCTCTCCAGCCTGATTGACAGGCCAGACCCTGACTCTAAACAAAAACAAAAAACAAATATTTAAGTAATTTCCAAACATAGCAGAAAATATAAGCATGGTTTATCACTTTGATATGACACCAACAGCTACTTAAGATAGAATCATGAATTCAGTAAATTGTTGTG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
48 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GTAAATACAGCCATTCCAAATGGGACAAATTATCCAAAACAAAGGGGCTACAGGCTCCATGCAAGTCCAAAATCCAGTGGGGTAGTCAAATCTTAAAGTTCCAAAATGATCTCCTTTGACTCCATGTCTCACACCCAGGTCACATTGATGCAAGAGGTGGGTCCCCATGGTCTTAGGCAGCTCCACCCCTATGGCTTTGCAGGGTACAGCCTCCCTCCCAGCTGCTT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
49 | 4_histone_marks | Can you confirm that the K562 DNA sequence ACATTAAGGTGCAAAGATAAACTATATGAAGAGCACCTATGAGGAGGTTCTTTGGAGATTACAGGGTAATGAGGGAGGAACGCACTCCACCAATTGTTGTGTTTGGTTCAGCTTCTCAGTTGTACAATCCTACTTCTACCAAGGGAATGGCTATTTCTGCACCAATGAAAAACTCATTACCTCCAAGGGATTTTGGAGGTTAATCAAGGTGGTTCTGAGGCTCTGAGAGGGGCAGCGTCGAGCCTAAGATCACACAGTTAAACGACGACTTTGGCCT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K27me3", "truth": "H4K20me1"} |
50 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: AGCAGTGGTGCTATCACAAGTTCCCTCCTGCTGGAGCCTCTGCAGAAGGCCAGGCAGGCTGCTCTCCCACAGTCACGTGAGCAGATGTCCTCTCCTGCCTCCATGAACCATCCCGTTTGGTTACCTGGACGCCATTATATCCCCCTGCCCCACCATAGTGCTTTCTCTGAACTGCATTTTAGCGTGAAGCCAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
51 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: GGTAGCGCCTATTAAAAGTGGCAGCTGTTAGCAACGGTTAGGCAAGCCGTCTCTTCCCTTCTCCCACCCCTCCTCTTCCTGCTCCTCCTTTCCCCGCTTTCCAGTTTCTCCTGCCCCTGACCCCGACCCTCCTCACTCACCCCCTGTGCTTGGTCACCGGCACCACGGTGCGCACGGGCTGCATGACCCCTCCTTCGGGACCGCTGGAGAAGTTGGCCAGGGCCGTCTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
52 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K9ac?
Sequence: AATGCAGCCTCAAACTCCTGGGCTCAAGTGATCCCCCTACCTCATCCTCTTGAATATGTGGGACTATAGGCACATGCCACCATGCCTGGCTAATTTTTTTCTTATTTGTTGAAATGAGGTCTCATTGCGTTGCCCAGGCTGAACTCAAGCAATCCTCCTGCCTTGGCCTCCCAGGAGCTGGGATCCTTATAGTTCTTATATTGTGCTTTAAGTA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K27ac"} |
53 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K9ac?
Sequence: AAATACAGTATCCTTGGGCATACTCTATGCAAAATCCTATATAAGGTATGAAACCTAACACTTCCCCACTCACACGAGGAAGTCAGAAAACAGCTAGCAGATGATAGCAGATGAATATAAATACACATGTTAAGCACAAAGTGAAACACTGGTTCAGTGTTTTTACATTAAAAAAAGAAACCAGCACTTGAAACTGTTTTCAAATACTAATTTC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9me3"} |
54 | 4_histone_marks | I have a DNA sequence CAAATATTAGCCACTCAATGAATGTTAGAGCTAATTATATCCCGTTATGAAAAAATAAATTGCTTAGTGAATTCTATTCTCCCTACACATGTGCATATAGCTACTACACGAATAGGCAACTGGCAGCTATCAATTTCGTCCAACTGTCAATCAGATCTGAGAATTACAGATCCAGTTCAATCATCAGACAGCCCGAAACTGTTACCTGAATATTTAAATAACTGCATCTGCTATAGAATTCACGAAGCAACCCTTTTTCAGCAATCTCACCACTCTGACAGTTTCAAAGCCTCAGAGG... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K27ac", "truth": "H3K4me3"} |
55 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K36me3 modification?
Sequence: TGTCAGAATGGCCCAGGGATATCTGGCCTTGGTAGGTGTACTCCCAGGCCTGGGGTGGCCTTCCTCATGGCAGAACCTGCCTTCACGGCTCCTCAAAGCTGCCATCCTTCACTCCAACTGAAGACACCCCTGACTGATTGCCTGCAATTATCCGAGGAGTGGGGGAAGGAGGGTTTTGGTAGTCTTGCAGCCAAATTAATCTTAATTCCCTTCAACTCGT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K36me3", "truth": "H3K27ac"} |
56 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence CGGCTAATTTTGTATTTTCGGTAGGGATGAAGTTTCACCATGTTGGTTGGGCTGGTCTTGAACTCCTGATCCTCAGGTGATCCACCCGCCTTGGCCTCCAAAAGTGGTGGGATTACAGGTTTGGGTCACCGTGCCCAGACTAATTCAGTATCTTTAGTGAACTATTTTAATGAAGTCTATTTCCCCCTCTGTGTGAAGCCTCTTCTATTATCTCTTCAGAGAATGCAGCCTGGGACATGACCACAGTCACCCAGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H2AFZ", "truth": "H2AFZ"} |
57 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: CAAGAGGCATCACAGCCCATTTATTTGACAGGATTTTGTTCACCATCACCCCAATCGTGGGGGGTACGGAGGCTCGGACTCAAAAGAACAAAGATTTGTTAAGAAACCATTGCTCTGCAGCCACACTAGCTAGATTGCAATCCCAGCCCTGCTGCCTGCTGGCCTCAAGCGAAGTTTTCTCACTTGTGAAAAGGGAAGATTAAACCGCACCTCGTGGGGTTTTGCCGTGAGGATTAACTGAGATTATATATGCAAAGCGCATA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H4K20me1", "truth": "H4K20me1"} |
58 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: ACACCATGCCGCAAACCAAAGTGCTGCAAATCAAGTCACGCAAACAGAGGTTTGTGCTGGGGATCCACCACCGGGAGCCTGAACCTGGGCTAGTCACGCCTCATTTCTGTCCTCGTTTTTCTCTTCTCTAAAATGGGGCCACCACAAACGGCTGGTAGAAGTAAATAAAAGAATATGCCCAGTGTAGGAACTGGCACATAGCTGGTGCCTAATGAATGTCAAGTTTCCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
59 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: CCCACCTTTCTGGGTGCCCATGGTGTGCTTATATCTGTTTAAAGGCCAGCTCTCAAGGAGCAAAGAGCCCTGGTTTCAAGTGTTTGCCAATTTCTGTGTGGCTGATTTCAAGCTACCAACATCATGACTGTGAATATAGATTTGGGAGGAGATGCACAAAACCAGCTCACAAGTGGTTTGCAGCTGGCTCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
60 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: AAGCTTTAAACTCTCAGGCTATTTCTCAAACATCCAACATCCTTTATCCCGTGGGATAAGTGTAATACAGTGTGGTACTATTAGAGCACTCTTCAACATTAATAGTCGCACCATTCACCCACTCCTACCTACTTGCAGGGCGCCAAATGTCCTCCCTAGAGACCCAGGGTAGGGAGCGCTGAGCACTGCCTCCTTGCC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
61 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me1?
Sequence: GACAATATAACGGGTGGTCTCCTCCCTTAATGGGGATTACAATTCAAGGTGAGATTTGGCTGCGGACACAGAGCCAAACCATATCATTCTGTCCCAGCCTCTCTTAACTCTCATATCTTTTCACATTTCAAAACCAATCATGCCTTCCCCAAAGTCCCCCAAAGTCTTAACCATTTCAGCATTAATAAAAAGTCCACAGTCCAAAGTCTCATC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
62 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: AATGGAAGTACTTATTTAATTGTTTGTTTGTTTGTTTTTAAGTGACCTGAAAAAAATGTCTGGATTTCTAGAGGGCTTGAGATGCTCAGAATGCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATTGCTGCTGGTGTACTAGTAAGTGTCATTGATTATTTGGGCCTTATTTTTTGGTGCGTTTGTGTTTATGGGTTTTGAATTCTGCAGGATG... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me1"} |
63 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: AATGTTTATTTTTGTTATTTTTTAAAAAGTTGATACATAAATAAAATTCTCAGTTGTAATTTCTCAACAGGATAGAGCTAACCCACATAACAAAAGGTCTTTGCAGTCCTCAGTAAGTTTTACAAGTTTAAAGGGGTCCTGAGACCAAAACGTTTGAGGACCACTGTCCCTCCGGAAGGCTGCGGCTTTCTTCTGGTG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
64 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: TAGCTTGAGAATGTGCCTCGGGGCCCGTCTGCAGAGACCACCCCCCAGTCAGGGCAGCCGGGCCAGACCTCGCCCAAGCCTGACCCTAGGCTGATCCCTGGGAGGAGTAGGGATCTCTGGGCCCTGCCCTGCCCTGCCTTCCTCACCTCCAAGTTGGCCTCAGCAGGCCCAGCAGGTGAAGGGCCCAGGCC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
65 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence GGATTACAGGCGTGAGCCACTGCGCCTGGCTGACTGCCTTCATTTCTAATACCAAATGCAAGTTGGGGAGTTCCCAAAACCACCCTCAGTTTCAATAATTCACTAGAAAAACAGAACGCACTGAAAAGTATTATATTCATGGTTGCAGTATATTATAAGGAAAGGATTCAAATTAAAATCAGCCAAGACGCAAGTTTTTACTGGACTTGATCCATTCTACCCCTGTGGTTGACCTTTAGTTTCTAGCCCCGCCCAGATGT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
66 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: TGCGCTCCGCCTCGGGTTCGGGGAGCGCCGGGTGGGGGTGGCGGGCGAGCCCAAGTCGAAGCCCGAGGCGGGAGAAGAGCTCATACTACGTTCCCCGGGCCGGACAGGCGGGCTCCGGAGGGGCGCTCGCCCCGCCCATGCGGGACAGGTGTTTGCCCACCTAGGCCCCGGACCCGGAGCCGCGCTGCCCACGTGCTCGGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
67 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: CTGGGTGGGGCCACAAGGACCGAGTTAAAAGTCACAGGTCCAGGTAGAGTCATCCAGGTGGTTTTCAGGAATGCAGAAGTCTGAGAAGACACCTCAAAAGGCCACTCCTAGGTTCTACAATCATCCTGTTATCTGCAGGAGTCACTGGGGAAGTTGCAAATCTTGTGGCCTCCAGAATAATGATTGGTAAAAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
68 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: ATACTAAACTGCAGATGAGGCCCTTCTCTTTCAGTCTAAAAGAGACCTGAAGCCTTCCTGCTTTCCCTCCAGAGATCACCACCACATCTCAAGTGTCTCTAGCCCAGGGCTTATCTGAGAAGCAGAAATCTATCCCACACAGTCTGCCTGGGCATGTGTGCTGAGAAGTGGTTCCCTTCCTTCCATATAATGTGTTCCTAATTTAGCATCAATGACACAATTTCAGCAAGTGGTTATGTGCCAGCAAGCACTTAAGAAAAAGGT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K27ac"} |
69 | 4_histone_marks | Sequence: GAGGCATTGCCTCACTTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGGCACCTGGAAAATCGTGTCACTCCCACCTGAATACTGTGCTTTTCTGACGGGCTTAAAAAGCGGCGCACCACGAGATTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGATTAGGTAAACAAAGCAGCCGGGAAGCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
70 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: TAGGAAAGGAATTCTTGCATTTTCAGTTGTATGGGGGATAGTTGTATCATATTAGGCAGAATTATTATAATCACCCGATAGGTTCTTCCTGCCCACTTCAAGACAAAACCAATTCACTGAGACCATGGCATTGCAATAAAGAGTTTAATTGATGTGAAGCTAGCCATACCACATGAAAGACAGAGTTATTACTCAATTC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
71 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H4K20me1?
Sequence: TTACATTAGAGAAGTAACTTTTTTTTTTTAAACAGGCGTTTATTCTGTTGCCCAGGCTAGAGTGCAGTGGTTAGATCACAGCTCACTGTAACCTCAAACTCTTGGACTCAAGCATTCCTCCTACTTCAGCCTCGAGAGAGTAGCTAGGACTAACGGTACGCACCACCACGCCCGACTATTTTTATTTCATTTGTTGTAGAGATGGGGATCTC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H3K4me3"} |
72 | 4_histone_marks | Sequence: ATGAGAAGGAGGTATCACATTGAAATGGTGGCCTTGAGCAAATTACTTTATTTGGTTGCACTTTAGTTTGCTCCGCTATAAAATAAATCATAGAACTGGCCTCATATCATTGTTGTGAGGATTAAATGAGTTCATGCATCCCAAACCCCTAATGTTAACTACTATTTTAGGACTTGATTTGTTACTTTCTGCTAACTCTCTCTTTAAGCTCGGGACCTTTTTAAAAAAACATGCTGTTTGGAGTTCCAAATGAAAACATATTAACAGCAGAAAATACAGCTAGTGCTTGAAATTCGTGAGTCCTTTTAAA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
73 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: CAATACACCATTTACATATGAGAGAGGGGTAGAGGAATAGTCACTTATGCCTTTGTGTAGCTCGGGAATCTGCATTTTTACGTAAAATAATGTAAGCAGTAGGGCAAAGCATGCAATCAGACATGCATTTGTCTCAGCTGAGCCAAGGGATGACTTTGAGTTCTGTCCTTTGTCCTGCACCTGTGAAAATAAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
74 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: GGGAGCTCCGCTGCCCTGGCGTCCCCTGGGTCCAGGCCCAGTCGCTCCTTGGGCCTCTCTCGCGGGGCCGCCTCCGCCTCCTCCTTGCCGAGACGGGCGTGGGGCACGGGGTCGCCGCCCGGCGGGGAGCTCATCCGGCGGCGCAGACGCCCCGCGGCTCCGGGGAGGGACTTGGCCTGGGCCCCGGCCCC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
75 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: CCATGTGTAAAAGGGCTCATGTGAGCGAAGCAGCAGCCGGGGAGAAGGCATATCCAACACACCTCAGGTGCAGTGGCGGCTTAAGGAGGCATCCCAGGAACACATTAATCAACACATTCAAGGAATGCATTAATCAACACTGCTATAACGGCTGGCATGCCCATTGTTTCACTGTAGCATGCTAAAGAGCACAGAGCAGCAATGTGAATGTGAATTTCCACCATGCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
76 | 4_histone_marks | Is H3K9me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: AGCATGGCATTTGAAGAGATTTGAATGAAGTAAAGGTCTAAATTATATGATTAAAAGAGTATTCCAGGCCATGAGAATAACCAGTGCAAATGCCCTGATGGTAGAACACTCAGCACGTTCCCAGCAACCAAGAAGGACAGTTCAATCACATTTAAAAGATCACTCTAGCAGCTATGTGAAAAATCTACTTGGTGGGGTAAACAAAGGAAGTAGGGT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9me3"} |
77 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: TATGTGAAGAACCATGTTCATAAAGCCAAAAGCAAAGTGAGAAGTGGACCACACAATCCATGCAATATTAGGGACAGAACATGAACTGGTGTTTCGGGTTTCACAGAGGCAGGTTTAGGTAAGTATTTTTAATGAAAGGAGACAAGAAAACAAGAACAAATATGATTTATATCCCAAAATGCTGCAAAAGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
78 | 4_histone_marks | Sequence: CCTCCCGAGAGAAGCCCACAGCCCTAGGTCAAGATAAGCCAGTGCCCAGCTGCCTGTGATATGAAGCAGGAGGCAGATGCGATAAGAGGTGTCAGGGCGGGCCCGGGAACTTTTGAACTTAAGGGGTGGGAGGGCCAGGAAGGCATCAGGGAGGAGGTTTCGTAGGAGCCTGAATGTGGAGACACTGCAGAGGGAAGGGGCAGAGGGACTGTGTGAGCAAGCACAGGCTAGGAGGAGGTGAGGGCCGTGGTACGGGAGTTGTTGGGTATGGTCAGGCTGGGGGTGCATGGGAGGAGGGTGGTGAGGGCTC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
79 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence CATATACCTCCCCCTACTTAGACTCCACCCTGGGGAAAAGGAGGGGGCAAATCCCCAGACTTGTTCACATTGTTTCCATCATCCCAGTGGAATCAGGGCTTGAAACAGAAGTTGAGTAGAGATTAATTTCTTCCACACCAGAGTTATGGACCAACACACCTATAGTGTTTACTATAGGATGGGTACTATATTTAGCATGATCTTACAATAACTATCTTATTTAATCTTTACAATACAGATTAGAAACTGAGACTTAGAAA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
80 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence AGAACACAGGCCTCTCTCGGGCCACACAAGCCCTGAAGAGGGCTCCAGCTCACTTCCACACACTCTTGCATGGGCTTTGCCTGGCCCACTGGGAGAAGCCAGGAGCAGACCCCACTGGCACCCTAGCCAGGTGGGCCTGGGGACCAAGAGGCCCTTGGGCAGTCACAGCCACTGCAGACCCAAGCTGATGCCAACCAGGATTATGTTTACGTCCCTCCTGTCAAAATCCATCTCTAAGCTTTTTGCAGAGGGAAGAACGC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
81 | 4_histone_marks | Sequence: TCACCAAAAATTGGGTAATTACCTTGCTTGTTTTTATCTTTCTTAAATGTATGTGTAGCTCTCATTTATCTCAGTGTTTAATATTAGAAGTAGTTGGGTCTTTATTTAGAAGTTTGGTGTTTTTTTGTGAATAGAAATATGCTGTAGGAACTTAACTCTTTTATACCAGTTAGCCTGTGGTAAAACTGTTTTATTATACGTTGTTTGCTTGAAGTTTCAGTTTCTGAGAACCTATGGACGACGTTAAGAAATGTGTATCTAACAATGGACTTATATCCAGAATATATAAAGAACTCTTGCTAATCTAACT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
82 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: ACACCATCCAGCCTTTTGTGTCTTCAAGGGGAAAACAAAACTGAGAAGCACCAGTGAAACCTACAGCCCAGGCACACTGATTCAAGCCTAACACCTAGTCATAGGAGGACAGAACATTTTCCCTCCCTCCACAGCTCACTGCCACATCAATAGGGCAATGAAACTGAAAGAACAGTACATGTCAGACCATAATGAACA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
83 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: GCCAGCCGGAGTTCAGCCAGCGGGCCCGGCGGGAGGAGTGGGAGTGGGCCGGGGCCAGGGCCGGGGAGAGGGGCCATCCCCGCGCGACCCGCAGCGCCGCACAGCGAGGGGGAGGGCGCCTGCGGGGAGGACAGGGTCGGGGGAGCGCCCTTCCGCAGGCTCCTTTCATTCTTCCACTTAGGGGTCTCCAGGA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
84 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K9ac signature. Is this correct?
Sequence: CCTGGGTTCAAGCGATTCTCCCACCTCAGCCTCCCGAGTAGTTGGGATTACAGACGTGTGCCACCACACCTGGCCAATTCTGGTATTTTTTGGTAGAGATGGGGTTTCACCATGTGGGCCAGGCTAGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAATATACTGGGATTATAGGCATGAGCCACCGTGCCTGGCCCCTT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K4me3"} |
85 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GTGACCCCTGTCCTATGCCAAATGAACTCTATCAGTTCTACCCAGTGGTAATTCCACACTTTCTTTCTTACGTGGCCTGAATCCCACACTTTCTTTCTTACGTGGCATGAATCCCACACTTTCTTTCTTACGTGGCATGAATCCCACACTTACTTTCTTATGTGGCCTGAATCCCACACTTTCTTATGTGGCATGAATCCCTCACTTTATGTGGCATGAATCCCTCACTTTCTTTCTTATGTGGCAGATTGTGTTTGGTAATG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
86 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CAGCCTGGAACTCCAGCCCTGCAAAGACATGGGTGTGACCTGCAAGTGTAACCCATTCTTCCAGAGCCTGTTATATTGCTCAATCCTACCCATAGCTTGTGGATTATATGGCACATGGAATCCCCCCTTTATGTCTATTTGTTGCATCCATTGTTGTACGTTTTGTCCATTGAAACGTGCTCCACTATCACTCTCAGTGGCCAGAGGGCAACCATAGAGGGCACATAAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
87 | 4_histone_marks | Is H3K4me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: TTAAGGAACCTTGTTTTGTCATATTACCAGAGTTGGTTTTCTGGTTCCTTCCCATTTGGGTAGGCTCTGTCAGAGGAAAGGTTTAGGGATCAAGACTGTTGTTCAGATTCTTTTGTCCCACGGGATGTTCCCTTGATGCAGTACTCTTCCCCTTTTCCTAGGAATGTGGCTTTCTGAGAGCTGAGCTGTAGTGATTGTTATCTCTCTTTAAAATTA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K9me3"} |
88 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CCTGATCCACATGGAGAAACCCCGTCTCTACTAAAATTACAAAATTAGTCGAGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACACAGGAGGCGGAGATTGCGGTAAGCCGAGATTGCACCATTTCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTATAAAAA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
89 | 4_histone_marks | I have a DNA sequence GCAAATACGTGGGCCTGGACAAGGGGCACGGGAAGCTTGTCACTGTTTTGGGCCAGTCAAGTGTTTGTCACCGCCAAATTGGCTCTAAACGTTGTGGCTTCCAAACACTTCAGGGACATTTATCCTTACCGAGCGTGGCCTTGTACGGCTCCTCCACTTGTCTTGCAAAACTTGCTGCACAACCCACTTCCTTTTTTACTGAGGCCGTCAAGTTACTACCCATTTTTCTCTCCCTTCTGTAATCTTGCTGTGCTTACTGTTGTGTATATCAATGGACATCTTATTGTATACGCTGTTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
90 | 4_histone_marks | Sequence: TTCTTTTAGTAAAAGGGAGGGGCCTGGGCCAGCCTGGCCTGCTGCTGCTCCCACACCTCCAGGACTCCTCCACAGGCAGGGTGGGGCCGCCATCAGCTCTGCCCAGCAAACTGTGGGCACAAGGGCTGGGGGTCAGGCTGGGCTGAGGCAGCTCCTATGCCTGCTCTGTGACCCAGAGACCGTAGCCCTGGGGGCTGTGGGAGGGCCACCCAGCCCGGGTTCAGCAGCGACACTCTGTGACCCAGAGACCATAGCCCTGGGGGCTGTGGGAGGGCCACCCAGCCCGGGTTCAGCAGCGACATGAGTGACA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
91 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K9ac?
Sequence: CCTCCCATCTGTCATCCCACCCAGACTGCGCGCTTCTAATTCCTCCTACCCCACATGCTGTGCCCAATGAAAAGTATGGTCAGCGAGCGAAGGTTTGCAAGGAGACAGACGAGGGCGAAATTAAGCCAGGCGGCTTCCCTTTAAATCCTCGCAAAGCAGAAGGGCCCCTCACTCTGGCAGCAGGCCTTGGCCAAGGGGCCTTTAGCCCTGACGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
92 | 4_histone_marks | Sequence: CACGGAAGGGAAGTAGATGCCAACCAGCAGGGTGAAGGAGGCCGCGATGTCGGTGAGCACGTAGGGCAGTGCGCTGGCACGGCTCTCCTCTGCCACGGGCACCGAGGGCACACCTTTCTTCTCCACAAACGCCCCCGCGTGCGCGTACGTACTCCACAGGTTCTCTGCCGGGCAAGGAAGATCCCATGGGTTTCTGGCACCTTCTGTGCAGTGCCCCCGCCATGGGGCCGCCCACTCCCCGGCAGGTGCCACTGGTGGCCGGAGGGGAAGGGTCACAGCTTGTGCGCCGCAAGCAGGCTCCAATTCAAAC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
93 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: AAAAAAGAAAAAAGAAAATAACAAGTGCTTAGTGGTGCTTCTGGGAAGTTTCTTTAAACTTAAAGGCTTAAGGGGAAGCAGGTGGGCTCATCTTCTGTTCCTGCTAGAACATGGATGTGGTAGCTAGAGCTCCAGCAGGATTCTTGGACTTCAAAGTAACCTTGGAAATAGAAGCCATGAATGGCAGAGCAGCAATATAGGAGACTGGGTCCTGATACTGTGAGATT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
94 | 4_histone_marks | Sequence: GCAAGAGGACTGTTGTCTGGTGTGGTGTCATACTGCAGGACTGTCCCCTTACTCTAGTCAGAGTTCAGTATGTTGGTGTCCAAGTGGGAGATGTGGATGGATGAGGCTCCAGGTTGTCCCAGGCAGCTCAGTCCTCTGTTTTAGTCCATTCAGGCTGCTATAACAAAGTGCCATATAAGCCACAAGATGGCTGGCTTATAAACAACAGAAATTTACATTGTACAGTTCTAGAGGCTGGAGAACCCTAGATTGAAGCGTTGGCAGGTTCAGTGCCTAGTAACAGCTCAATTCCTCATAGATGGCCATCATC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
95 | 4_histone_marks | Sequence: CAAGGGGAAACTGAGGCTCAGAGAGGTTAAGCGACGGACCACAGTCACACACGAAATTGCAGAAGTGAGTGTCAGACCCAAGTCTGCTGTACCCAAAGGCAATCGCGTGGTCATTTAGGAGCCCTGCTGTTTTGAGACCCCACAGAGAAAGTGTGGGTGTTCCGTGTTCCTCTTACTGATTTATTTATTTTACGTTGTCTTCTGGTCATGTGCTGTTCCTGCCTGAAGTCCAGTCTGTGGGGCTGGTGAGAGGGCCATGAAGGAGATTTCTGGATGAGGTCCTGGTCCCCCTGCCTCCCTCTGGCCCCAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
96 | 4_histone_marks | Sequence: CCCTGGTCTTCCCCTACCCTGACCCTGGGAGGAAGCTGAAAGAAGCTTCTTTCTGGGCACCTTTTGCCCCAGAGCCTCAGCCTGTCTGGACCAGGTGGGCAGCAGGGCCCAGGGTGTGGGCAGCTGACCCGGAGGGGTGGGATTTGGGGGTCAGGGCCTGTACAGGGAACCCCTTGTCCTCTCCCTGAGCTGGGTGTGGGTTTGCAAGGAGACATGTGACCCAGACCAACCCTGGGAGCAGCAGGGCGCCTGCTGTCTGGCCACTCTTACTAGGACTGCTGTGGCACTTCCTCCCCTAGTGGGTCCCTGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
97 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: GCTTTATCTTTTGTATTTTCACTCATTTATCTATTTTTGAGACAGGATCTTTCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATTTCAGCTCACTGCAGCCTCAACCTCCTGGGCTCAAATGATCCTCCCACCTCAGCCCCTTGAGTAGATGTAGCCACAGACATACTCCACCACGCCCGGCTAATGTT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
98 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: CCTGCGGCCAGCGGCCGACCGGGCGCTGCTGGCTACCCGGGGAGGGGCTGAGGGCTGCGGCACCGACACCCCGGGGGTGTGTCTGTGCGGGAGCCAGGATGTGGTTGGTGGCTGCCGCCCGCCTTCAAGAGGTCGGCCCTCCAAACCTCGGACCCCACCCCCGCAACCGCCACACACACACACACCTTGGGCACCAGGGCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
99 | 4_histone_marks | Is H3K4me2 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CACCCCGCGCCCAACCCTCACTCTGTGACCTCGGGCAAGCTGCTTAGCCTCTGGGCCTCTGCTCCCTTTCCCAGTAATCAGGGTATTGCAGGTACCCCCTTGTAGGGCTGGCGTGCCTGGCACAGAGAAGGTGCTCAGTGCTGTCAGCTCTGCTGTTATAACTAGTCTCTTGATTCTGTCACTCAGGGGAGGAGGACTAACTGAGACCTCCTGCTC... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K9ac"} |
100 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CGACAGAGTGACATGAAAGCAAGTTTATTAAGAAAGTAAAGGAATAAAAGAGTGGCTGCTCCATAGACAGAGCGGCCCTGAGGGCTGGTGGTTGGTTATTTTTATGGTTTTTTTTTTATTATATGCTATACAAGGGGTGGATTATTCTTGACTTTTCTGGGAAAGGGATGGGGGAATTCCCAGAACTGAGGGTTCCTC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
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