id int64 | subtask string | question string | options list | answer_index int64 | answer_text string | metadata string |
|---|---|---|---|---|---|---|
201 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K9me3 modification?
Sequence: TTTAGGATTAGCTGTACTTTCAGATTCCTTTCTAAGAACAATAGGCAGCACCTGATTATCTTACCAATAGACGTAAATGCCTGTCCTGATTGAGAGAAAAATGCCACAGTATTGTACATTTTCTGTTCTCCTTGAAAGAAGGAATAAGATTGGAATAAGGGCTGTAGATGGAACTAGATATAAGCTAATTTTCCTTGGGCCTTGCCTGGAGGAGCATAAAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9me3"} |
202 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: ACAGAGCATGGTTCCCTGCCTTCCTTGAGCCCCAGTCTTGTTGGGGAAATGGCCAAATAAATGAATAATCATCAGGAAGTGCTATGAAGGGGAGCTGCGTGGTGCCCGGTGAGTGCAATAGCGGGGTTTCATCTGGTTGGAGAGAAAAAAGGAGACTCCTTAAGTGGGGAACCCGTTTGATGATACAGGTTTGGCTATGTGTGTCAAAGACCCCAAATATAGTGGGT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
203 | 4_histone_marks | Sequence: TTTTGCTAGAAGCTCTTTAGCTCAGCTCCTCTGAGGGCTCTGCCGTCTGTCCCTCAGCTTCCATGTCCTGTGGCTCCCCGGATGGCAGTGGCTTCCTCAGCCCCTGCAACGTTACCTTTTATGCTTGTGGATTCTAATGTCTACCAAGCAATCCTCACTTAGACTCAAGGAAGAAAACTGGGTGAATACCCCAATCTCGCTGCAAGGCCCACACCTCACAGGTGATGACAGGGGCAGGAAGGAAGCCACACTGAGTGGAGGGTGCTGCCGTGAGCCTGCCCACCGCGTCCTGGTTTAGTCGCTAAACTTA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
204 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: TGAGTCCCCAACCCTTGAACCGCTCCTAGCACACAGCAGGTGCTCAAGCTGAAAGTCCGCACAGACCCCTTGGGAGAGGCCTTGAGCACGCAGCATCTCATCTCATCAGAGCATCTCCTTTCGTGTGCGTTTGATTAAACACCTGGAAAACTGGCTTATCTAGAATTTACAATGCAGTTTGGTCATTTAAAAG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
205 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me3?
Sequence: TTCCTCCTAATTCTGCCATTCTTACTATGCACAATGCGTATTTTCCATGTACTGTAAGAGAGATGCACTACACAGAAGTATCCATGGGGACGAAATTTTATCTACACTGAAATTTAATGTGGGATAAGTAAGCTTATCATAATGGAGTTTTACACAGAATGTGTATTTCTCAATGTAAAATGATTTTGTGAAGTAAAGGGGGAAAAAATAGAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
206 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: AAGAAGTAATTTTCTGATCTAGCATGTGGATTCTTGAGTCATCTTAACTAAGAGATTGGGAGCAGCCTGTGTGGCTGACAGGCCCTATTGCTCATGACTTGTGTATGTGTACACGTGTGGGATGTGTGTATGCATGTGTGTATATGTATGCAGTGTGTATGTGTGGAGTGTGTGCATGTGTGTACATGTATGCATGTGTAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
207 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: TCAGGGACAATGGCTGAGGGAGAAGCTGGGAGTTCCCCCCAGGGTTTGCCTCCGTCACTCTTGGGCCAGCCAAGGGAGTGGGGCTGGGAGCTTCAGGATGGCTTTTGGGAAGCCCCTGGGAGCCCCAAGGCTTGGGTAGCTGCTGACAGGGAGTTCACAGCAGGAACGCTCCCAGGCTCCCATCCTGCGTCCG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
208 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GCAGGGAGGCAGTGCCAGCCCTGGAAATGGATTAGACACAGGACAACTGGACTCTCAGCAGGCTCCCCAGTAAACCACCAAGAGACCCAGACACTATTAACAACCACCTTCCCTGTTCTCTGGAGGGGATCCCAGGGTCACAGACAGAAAGAAAATTCTAGGCAACTTGGTACTTCAAAGAGAGCACTGGACCAGGATTCAGAAGTCATAGGTTTAAATCCCAGCTC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
209 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: CCTGGGACTTGCCTAATCCCTGGTCATGATGCCGTACGGCAGTGAAGCTGCACCCGTGTGACCAGGGCCCTCCTCAGGGACACGGCCATTCTGAGACTCAAGCTGACTCACCAGGAGTGGCAACGACAACAGAAGGCCCTTCGAATAGCAATGTTCCCATTTAGTGGACATCCCCGACGTTTTTCCTAAAGCCTCCACCAGCATTAGTTTCCTTTTCTGTAAAATGC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
210 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: ACTACTCTCCCTCGACAACCAGGAGGTTAAACAATAACTCGGTCCCACATGGCCAGGACTTGACTCACAACTGATAGCCGTCCTAATTCGTGCCCCCGCTTTCCAGTTAGGATCATTTGGAGAAAGCCAAATACATCCCTAACCAATCACACGGGACGCCCCCCTTCTGGGAGCCGCCTCCAGTCCCCCGAGGCCGACA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
211 | 4_histone_marks | Is H3K4me2 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: ATTTACAGAGAGTGAGAGACTGCAGCACTAGACAGCGAAGGTGAAAACCAGGAACGCCGCGTCTCGCCGCCCGCGGGCCCGCCGGGAGACTGCGGGTCCGTCTCGCGGGTGGGGCGCCCCGGTCCCTCTCGTTTCCTGGAGGCCACAGGTCACGGCGACGGCGGTGACCGGGAGAGCAGGCTGCGAGGCGCGCCTCATCGGGCCACAGACAAACCA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H2AFZ"} |
212 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K36me3 modification?
Sequence: TCCAGGTGAGCAAATTACCCTGAATAAGTGTGTAGGCTCCCTCCCTGCCACCGAGGGACATGGTAAGAAGGCTTCCCCAACACAGGTGTTAGCAGGGTTAATGCTGTCCCATCAGTAAAGCAAACCTGTCCAAAACGCTCAGGGGTTTCAGGCCTTGCCATCTGGCTGGGGAGCCAGACATGTTTCTTTTGTGTGTTTATCAGCTCCCCAGGTGTGTCCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
213 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GAGACTCTTCCAGAAGGGAAGCAAGGGCAGAGTCTCCTGAAGGAAGGGGCCTTCCCAGGTGGTCAGGGGAAAGTGGGGCAGAGTTGGCTTCCAAAACTGTGGGTACAGGGAAGCCAGGGTAGTGGGAAATCCAAGTCCGAAAACTTGGACTGGGGTCAGGCTCAACTACATACCCGCCCTAGGACACTCTCAGGCGAATC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
214 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: CACTTGCGGAGTCCTGCCTGTGTGAGAGATGTACCAGCGGGTGCACGTTCATACTACAGCCTGGAAAGATACAGCTTGCTGGCCTCCCCTTCCTCCCTGAGGGGTCTGAGAGGATTAGCTGCCCAAGACTGCCAAGCTGGCGACTGGGGGACCAGGCTAGTCTGACCATGCCCACCTCCCTCCCCAACAATGCAGACAGCTAGGGCAGGCAGGGGTGGAAGATCCCAGTGGGACAGCACTGAAATGCAGGGGCCACTAGAAGT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9ac"} |
215 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CTAAATAAGATTAAATAAACAGTAGGATATTTGATGAGTTTGAGTGTATTCAGAAGAGACTTTTGGCTATTGAAGTGTTTGGGAATAAATTAGCCCTAGTTACACAGAAAATTAAGCATACAGAAAAATAGTGACACAAGCTACATATTTGGTGACCTTCATGAGCAATATGTGTTTATTGAATATTTGAGAAAAAATGG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
216 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GGCCCCGGCCCCCCCACCACATTTCTCTGGCTCCATCCGGGGACACAGCAGTTAAGGGTGGGAAACCTCAAGGATGCTCACCCACCTCGGGGAGAGGCTGAGTCTTGTTGAGAAGAGGGGTGTTAGGGAGAGGGGTAGGGGGTTGGACACAAGGGAAAGGAGCATTTGACGTGCACGGAGCAGAGTTTGGGGGTCCTTGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
217 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: CGGGCCCAACTCCCGGCCAGGAAGTGCGGGGGCGGGCCGGGGAGAACAACTGACTTCTGCGCGGGGCGCGGTGGGGTTCTGCGGGGTCGGAAAGACTCCCCAGATCCCCGCGCGGCCCCAGACCCAGACTTACCTGGGCCCTCCCTGGGCCCTGACCCAGGAGGCGCGGAGCACTGCAACTTCTCTCGCCCCCTGGGTCGC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
218 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GCAAGCCTCGCACCCCCTGTGAACACTCTTCAGAGACTCCTGCGGTGCTTCTCTCTCTTCCTGTTACCCGTCACCCCTCGTTCATTCCTATCCTTCTACCTCTGCACAAGGTGCTCCCTTTAGGGGTCCCACAGTGTCCTGTATATCCCTCTCTTGTTGGGCTTATTAGTCTGAACTGTCACATACTGGTTCTTTGTCCAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
219 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H4K20me1?
Sequence: CAAAAATGAGCTGGGCGTGGTGGCAGGCGCCTGTAATTGCAGCTACTCGAGAGGCTGAGGCAGGAGAGTCGCTTGAACCTGGGAGGTGGAAGTTGCAGTGAACTGAGATATCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAACAAACAAACAAACAAACAAACACACACACACACACACACACGAAAAAGAAA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H4K20me1", "truth": "H4K20me1"} |
220 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K36me3 modification?
Sequence: GGAAACGAGGTCAGGCCTCCTCATTCCTTCCTGGGCCGGCGGGCTCCCTTCACCTCATCCTGTTCCTGGGTTATTCGCTTCTGACGCGAGGCCCTAGGGCCACCCCAGCTCCACATCGGCCTGTCTTCTCTGCGCCCTGTGGCTGACTCAGCCCTGAATCACCTCTTCCACCCCAGGTCCTCTTCCCGGGAGAAGCTCCACCATGGGTGCCATTTCTCCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K36me3", "truth": "H3K27ac"} |
221 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: TCACAGTTGAGAACAAAGTCAGTGTTCAGCAGAAGAGTGAGTGCATAAGGGGTTGTCCATGGGCCCCGTGCCCTGGCAGCTTCATGAGCAGAAACTGCCCAGCATTTCACGTGGTGTGCTAGGCCCTTGTCAGCAGCATTTCAGAGCCAGTTTTAGTAGCATGGCCCAGTGTCCCCCAGCGCAAAACCAAGTTGCTGCCCTGTAAGTCGCGCAGCCTGCTTTATCTCACACACACGCTCATGTACACGCTGGAGAGGCCTAGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
222 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: ACGTTTGACTTATGATGACCATTTATGCACTTTCAAATGAATTTGCTTTCAAAATAAATGAAGAGCAGCTGTCCTTCTTTCCTCTTTTAAGTGTTCAGCTGTGGCATGCTCAGAGGTTCCTGCTGGATTCCAGCTGGAGCGGTGTGATACCCTTCTTTTTCAGCTGTTCGTGCCTTCCTTTCTTGTATCCACCAAAGTGGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
223 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence CTTGCTGGGTCTGTTTCCTCATCTGTCAAAATAGTGATAACAATAGTATCTAACCTATTTAGATTATTGTGAAGATTAAATAATACTTAGGGTTACTGTGAGGGTTAAATAAGTAATACTTATAAAAAGCAATTGCTACTATGTTGAGCATAATTAAGGTCAACTGTGATTACTATTACAAAAAATAACATTTGATGATTTTCCTGGTTAATTTGCCTTGAGCTACCTGGTGGTGGGGGTGAAAGGGGGAGGGCT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K9ac"} |
224 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TAACATGTGATTTGACTGCCTGTGGAGCTAACATTTTCCTCAGAGGGATGAGCCCACATGATCTCATGACAAGGCCGACCTGTCCTCCAGCCTGCCAGAGTGCAGGCACAACACTGGCCCTTGACACAGCTTGCAGATGGGCACGGCCTCTGGGCTGTGTCACAGCTGTTCCACTAAACCTCCCGTGAGAAACCGGTG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
225 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: AAAAATACAGAACCCCAGAATAGATAAGAACTCACCAACCAACTTTCTGCTGCCTTTAGGAGATTCACACAACACATAAGGACTCATACAAACTTAAAGTAAAGGGGTGAAAAAAGGCATGTCATGCAAATGGACACCGAAAGTGAGCAGGGGTAGCTATTTTTACATCAGACAAAACAAATTTTAAAGCAACAGCAGTTAAAAGAGGCAAAGAGGGACATTATATA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
226 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: CTGCCTCTGTCTCCGTGTCTGTATGGGAAACATGGAGGTCATGGCATATATGACAAGTGCACATGTGCTGTTCCATTCCCACAAGGAGAGAAACATGGGGAGTAGCCTATAATTCTGTGTCTACCAGACTCCTCTTCATGCTCCTAAAAAGGCCTGTTTCTGTAACAAATCATCACCATGAGGACACATTTCTGGGGGCCTACATGATTCACAGACTGCCC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
227 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence GTCTTGAGCCTTTACTAGAGCTGGGGAAATGGCACGCTTGAGACATGCCTCACCTCGAGACCCCAGTGGATGTCAAATGTTATCCTTGTTGCACAGAGGAGGAAACTGAGGCTTAGGTTAAGCAACCTGCCCAAGGACCTCCGGCCGGTTCCACTGTTAGAGTTCATGCCCTTCACCCTAGTATGGGCCTGCGTGTGTGGACAGAGGGGCAGACAGGGAGGCTCACCTCAAACTCCAGGTAGGCCTCCTTCTGCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me1"} |
228 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CATCTCACTGACTCTCCAAGGACTTGCTTGTAACTTCTCCCACATTTGAACCTTGTATATTGTCGTATTTCTACTTGGCATCAAATAAATAATTATAGACTTAACTCTACGCTTACACCCAAACTGGATGGAAGCAAATACCTTCTGGCTATAACTGATGAGTGGTATTTACATAAAGTGAATATCTCAGGTGAAAACTTTTATGTCTGCACTCGAATTTTTTAGCTTA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
229 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: TGGAGACTTCTTTTTAAACTAGTAGATTTCGCAAATTGCAACACATACATTATCTAGTCCACGCAAAGGACAGGCCTTGGGGACACGGCACGGGGAACGTGTTCCACCTGGACGACTGAATCAGAAGTCTCTCCCCCATCAATTGAACGCCTCATTATTTTTCTTTCTGTCTTTTCTTTCTTTTTAAGGTAAATGAATTGC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
230 | 4_histone_marks | Can you confirm that the K562 DNA sequence AACACCCAACTTCCCTGGTGGCCTGTGGACCCGAAAGGAGGGCAGAGAGGAAGGGAAACAGGAAGTGAAAGGCCCTTGGGAATGAAGGCGATGAAAAATAGACGGGGCTACTTCCCCAGGGGAGAAGAGCCCACAAGGAAAGCCAGGGCCCTGCGCTGCGTTTGCGGGGGGTGGCCGAAGTGGCTGACGACCACCCTGTGTGTCAGCTTCTCCCATCCTCTGCGCGCTCCTCACCCCCACCCCAGACCTCCAGCTGTCCATAGGAAGTGGTCTGAAA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
231 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K9me3 modification?
Sequence: GCTGGAGCTGCTTGCCCCATTGCAGCAGCCAGTGTGTCTGGCTGTGCACTATGGCCAGACCCCACGCTCACTTCCTTACACACCCCTCACCACTCTGCACCTGGCTCATCCAAGGTGAGAGTGGAATCTGGGCCAATAGCATGAGCCAAGAACAGCCTGCCAGGCAAGTCGGCAGAGCCAGCTCAGTGGTCACAAGTGAAACTTGGGGACAGGAGCCACCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9me3"} |
232 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: TATAATTGATGTGCATTAAGTTCAGAAGAAGATAAGTTTTTCTTCATCTGGGAGACCACGGAAAGCTTCTTTGAGAAAGTGGCGATTTAATTTGGCAAAAACAAAATCAGGAAAGTGCCAGATACCTGATGAAGTAAAAGCAATTACATTTAAAAAGTTAACAAAACAAAACACAGATGTGAGCAGATGCCCTACATAGATTAAACAGGTACACGACACTGGGCCACTGACCAGTGTTTAGGCTTCCCCTAAATGGAAAGGCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
233 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: CAGAACATGCAAAAGTCCCAGGTAAAGAACAGCAAAGAAGCCAGAATGACAGGAGCTGAGGGTGCAGAAGAGAAGTAGCAGGGGGTGAAGGCAGAGGAAGTGGAGGCCTGCCTCTGTGGGTGTGGGACCATGTGGCTCATGTGGCTTTTATGCTGAGTGAGATGGGAAGCTAAGCTGGGTTTAAATCAGGGAGTGACATGATCTGCCTTACTGTTTAAAACGGGCACGCTGGCAAACACCTGTTAAGGGACTTTCAAAATATTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H2AFZ", "truth": "H2AFZ"} |
234 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CTCAGCGGGCGGGGCGGGGCGGGGCGGGGGCGGGGGGAGCTTCCTCGTCGTCATGGGAACGGCGCAGTTATTTCCAGCCCCCGGGCCGTGCCAGTGGCGCGGTGCCAGGATGCGAGAGTATTGCAGGACAGCGGCAATCTGCTGCGACCTGGGACATAACAATGCGCCCCTTCTGCAGCGCTGGGCCCGCCGGCGAGAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
235 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: TTTAAAAACAAATTAGCCGGGTGTGATGGCGCGCGTCTGTAATCCCAGCTCCTCCAGAGGCTGAGGTGGGAGGATCGCTTGAGCTCAGGAGGTCAAGGTTGCAGCGAGCCGAGCTCGTGCTACTGCACTCCTCCCTGGGCCACAGAGGGAAACCCTATCCATAAAAAACCAGCAGCAGGGCCGGGCGCAGTGGTTCACGCCTGTAATCCCAGCACTGCGGAGGCCGAGGCAGGCGGATCACCTGAGCTCTGGAGTTTTGAGACC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
236 | 4_histone_marks | Sequence: GCTGGTAATGTACATAAGTGTTTCCCTGGGTTCTGTGAGCCACTCCAGCAAATTAATCAAACTCCAGCTGGAAGCTGGTTGGTCAGAGGCTCCAGAGGCCCACACTTGCCACTGGTGGGAAAGAGGGAGTGGTCTTGGGGACGGACCCCTTACACTGTAGGAGGTGAAACTAGCTCTGGGCAGGCAGCGTTGGAACTGAATTAGAGGTGCCCGCTGCCTGATGTGTGGGGAAACCTCTGCACATTTGGTTGCAGAAGTCTTCTTCCATGTTGACGGTTGTTGTGGTGTGAGAGCAGAGGAGAAACAGGGT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
237 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H2AFZ modification?
Sequence: AGGAAGATGCTCGTCTTCTGTGTAGCGGGCAACAGAGGGCAGCACGGCCGCCGTCCTCGTCTCCAGCGGCGTCTCTCCTCTGGCTGTGGGAACACACTGCTCCTTTGGTGCCACTCTGAGCTGCTGAGAGGCAGTCAAGTTCATGCACATAGTGCTCCCCAATTCTGTGGGATTGGACAGTGTCCCCAAGAGGACTCCCCTGAAAATCTTCTTAGTAAAACAA... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H3K36me3"} |
238 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GAAATGTGTGTACACAATTAACATGAAAGCATTTTCAACACAGGCACCATCACAGACCTTTCGGGGAGAAAGAATCTCAGATCTTTTGGTCCCACTCTCAAGGCCATGCCCCAGTCACCCCTCATCACTAGAGACTGCTCCACCAGTTAAGTTCATAAACTCAGTCACTGATCTCCCCACCTGCACCCTCCTCCCCATCCATCTCTCATCAGCTCCTGGCCCCTCCAGACCCTGGATCCCTGCTCTCCCTTCTGCTTCCCTCC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
239 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K9ac?
Sequence: CAGCTGAGGCCTCATAGTCTCGCTCCACCCTGGGGCTGGAGTGTCTGCTGCAAAGTCAGGGCAGCGGCAGAGTTCTTAGCTTTGCTCACGCGTGGTAAAAGTCTCTTCTGTGCTGAGTCCAAGGCTGTCTCACCCTTCGATGTGTCTGCAGCTCTCTGGCTTCTTGTGCTCCTTAGTAGGAAATAGCATTGTGCTGCTTCTGCTGCTGCACGTC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K27me3"} |
240 | 4_histone_marks | Sequence: ATATTCATGCATTACTGTTAACCGTGTAAACTATGTAATCCTTTTGGAGAAAACCTGACAGTATATAATAAGGATGATGACAGTCTTACCCTTTGAACCTGCTGTAGCTCTTCCTTCCTGGCAGTTTATCCCGACGGTGTCATGAGACAAGAACTTATTGAGCAACTGCAGTGCTAGAAGCTGTGAGAAATGGAGATGAAGGAGACAGATTCTACCCTGAAGGTGAAGCTGGTGCAACTTAAAGGCACTAACATAATTCATGTTCAAAAATGTCTTCATGGAATTAATTATAATGAGAAAAAATACTTAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
241 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GTTCCTTTGTGCTCACACCCACTAGGATCGCTATATCAAAAAGATAACAAATGTTGGCAAGGATGTGAGAGACTGAACACTCGAAAATCACTATGGAGAAAGTAAGATGGTGTAGCCACTATGGAAAATAGTTTGGCAATTTCTCAAAATGTTAAATATAGAATAACCTGGGCAGCCCAGACAAGTGGTTTCCCCCCACTGAAGCACACTCCCTCCATCATGGGACA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
242 | 4_histone_marks | Is H3K4me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: GCTGGAGTGCAGTGGTATTATCACAGCTCACTGCAGCCTCAAACCTTTTTTTTTATTTTTAGAGACAGAGTCTTGCTCTATCACTGAGGCTGGAGTGCAGTGGTGTGATCATGGCTCACTGCGGCCTCAGACTTCCGGGTTCAAGCAATTCCTCTCACCTCACCCTCTGAAGTAGCTAGGACTACAGGCATGCACCACCACCCCTGGCTTTCTTTT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H2AFZ"} |
243 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: GTAAGAGAGAGACAGAAAGAGAGAGAGAATATCAGGGGACATGTGTATCCCTAGGAGTCCCTGGAAGGTATTTGTTACATGCTTAAAGACCAGCTATTGGCAGCCATTTTTGTAGCCCCCCAGTCTTGTCCCAGCTGTGAACATCCACTGCCTGGGAGGCCACCTGAAATCTCCTCATCTTTTCCATTGCTGGGGATAT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
244 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CATTGCGCTTGCTTTGGCAGCACATATGCTAACACTGGACCAATACAGGGAAGATCAGCAAGGCCCCTGCACAAGAATGACACATAAATGCATAAAGATTCCATATTTTTTTGGAACACAAAGGATAAATGCTTCAGGGGATTGACACCCAATTTTCCATGATGTGACTGTTACACATGGCATACCTGCACCAAAATAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
245 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: ACATAGATACACATGCATACGGGTTTTAAAGGCCCCAAACTACTCACACGTCATAAGCCCTGTATATAGCTCTGCACCAGAACAGAGCTTAGGTTTTCTCCAAGAAACAAAACGGACTTCTCAATGATAGACGAGCAAGCCAAAGCACCGCATATAGTAAGTCTACAAAGCATTAACTGGATTAATTAGCAAGGGATTTGAGAAGCAGCTTGGAGCTAGGAAACCAAAA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
246 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: CAGAGATGTGAAACCTGACGGGTTTCAATTGACCCCGAAGTGCTCCATATCTCAAAAGTCAATCCCACAAAGCTGGAACGCTATCTGTTCCTGAGGGATCAGGTCCCACCTGTGTCTCTAAGACACTGCCTTGAGATGAGGCCGATGATTTCAAACGTAAATTGCCTAAATTATCATCAGCTTCATGTTGTGTTTTGGAGCTTGTCCACTTAAGTGGGTTGATAAAAAATGGCTCACAAGACACATGCCTGGGAAATGGGGTT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
247 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: CATGTCCTCCACGTGTCACACCCGTATCACACATGCCTCAAACGTGTCACTTGTCAGTCACGTGTCACACGTGCCAGTCACATGTCAGACACGTGTCACACACGCGTCACTCGTGTGACAGGTGAATGACAGGTGACTGACACGTGTTTGGCTGTGACTGACAGGTGTCTGACGTGATTGACAGGTATCTGACACGTGTGACACATGACTGACACATGTGTGGTGTG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
248 | 4_histone_marks | Sequence: GCCCAGCCTGTGTAGCTATCTTTAGATATGCAAATACTTACTATTGTATTACAACTGCCTACAGTATTCAGTACAGTAATGTGCTGTACTGATTTGTAGCCTAGGAGCATAGGCTATGCCATACGGCCAAGGTGTGTCATAGGCTCTACCAGGTAGGTTTGTGTAAACACACTCTCTGATGCTCACAGAGTGATGAAATCGCCTAACAATGCATTTCTCAGAACATATCCCCATCGTTAATCAACACACGACTGTACATGATAAAGCACGTAGAGCAGTGCCTGGCACATAGTGAGCATTTGATCAATGT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
249 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: GGAGGATGTGCCTCCTTCTCCATCCAGGGAGGAATTCCACCTGTAGCTTAAGACCCTCCCTCTGTTTAAATTCCTGGAGATTTTGCTGGAAGGAGTTGAAGGCAGGTTTCCTTTTGTAAGAGGCCATCCGGGCCACAATCTCAGGCCTAGAAGGGCTCTGAAATAGAGTTAGGGTGCCCCTCCATCCCCTCCTGCTGGAACAGTCACCAGACACCCCAGTAGAGGCCGT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
250 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: AGAAGGAACAAAGAAATCTGTAACTGGTTACGATCAATTAGTTGTCAACACCACTGCACTCGGACCAGCCCAGACCAGGGTTTTGATGGAGGAAGGGGATGGTGTGGGAAATGCCCACCCAGGCCACACACCTTGGCTTCATCTGCCTCCTGGACTTCGAGCGGCACCTTGACAGGATAGCCCGAGGCAGCACGGCGTTCCCGCAGACGCTGGGCCTGCCGCTGGGCCTCAACTCGCTTGGCTTGCAGCTTGCCCAGCTCCCG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
251 | 4_histone_marks | Is H3K4me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CGCCCCCTGGCAAAGGCGAGGCTGGCTGCGAAGGTGCAGGCCGTTTGGCTTGGCGGCCCTGCCCCCGCTCTCCACGCCAGAATCTGGCATTCCTTCGCTCAGCCCCTCCGAGGCCCGCCGTCGGCTCTCGCTCGACCCCAGGAAACGCGGAACCTGAAGGGCAAAACTGCCCACCTCCCTGCACCCTGGCACTACGAAAAAGGAGTTTCTGAGACT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
252 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence TCTCTGCAGCCTTTGGGACCAGGGCACGGCCATCCAGACACGGCCTTAGCTTCCTTGTCTCTCCTGGGCCAGGTGGGCAGGTGAGATGCCTCCCCAGCCTCCGTGGGCCTAGAGAATCTCAGGGGCCTGGTTCAGGCCTTCTGCACCTGTCTGCTCCAGGCTGCATGGTGGCTGAGGCACAGGTGCGTCCGTGAGGCTGCGGGGCAACCCTGGCTTCGGGGGAACACAGTGCTGCTCCTTCAAGTGCACCGGAGGCTCCG... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K27me3"} |
253 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: GGCTCACTGCAATCTTCGCCTCCGGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTGCAGGCTTGCGCCACCACGCCCAACTAATTTTTGTGTTTTTAGTAGAGAAGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCGTGATCCGCCCGGCTCGGCCTCCCAAAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
254 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: GGAGAAGGGAGGCACTCAGATGCAGGTGCCTGGTGGGGGCAGTGAGAGGAGGTGGGAGGAGGGGGCTGCAAGACATCAGTGCTCTAGGGGGTCCTGGTGTCTCTGAGGAGCTCCTATGTCCCCCCAGAACAGCGTGGCCCTGGCCTCCATCCAGCTGCCCCCGAGTCTATTCTCATCCCTTCCGGCTGCCCTGGCTCCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
255 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GCTACAACCCACAGTACCAATACTTTCCCAACATCCTCTGCTCCTAGGCCTCCCCAGCGAGCTCCTCCCAGACCAAGACTTTTGTTCTGTTTTTCTACAACACAGAGTACTGACTCTGCCTGGTTCCTGAGAGAGGCTCCTAAGTCACAGACCTCAGTCTTTCTCGAAGCTTGGCGGACCCCCAGGGCCACACTGTACCCT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
256 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: CCATGTTGGCTAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCTCAAAGCAAACTCTTAATAACAACTGTTGTGGAATGACTTGGGAGGTGGCACTCAGAGATCCCAAGTGACACATGAGAAGTCCACAGAGAGAGATCATGTTTAGTGGAGTTTGGATGGTTGCTTTTATCAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
257 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: GTGTCTACAAATTTGCCAGATTACATCCTGTTCTACACATGACTACATTTATATTCTTCTGAAGCCACACAAACAAAATATATTTTCCTGTTAAATGCCATGCTTAATAGCATTTTGGAATTTAATTGCTTGTCTTTTATACAACTGAGAGAGAATGCAAGCCTTGCCTTCCTTGAAGTGTATTTATTTATGCTACAAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
258 | 4_histone_marks | I have a DNA sequence TTTAGTAGTAATGATGTTATTACAGTGCTTATTTTGGGAGATGGGAGTGGGTGGAATAAAAGTTATAGATGATTTACTGGAAACAGTGTATGATTCCTTAGGACTGCCCCCAAAGAAAGGTATAGCTTCCTTCTACTTGTGAGTTTCTGAAGAATCAGTTTTAGTTGGTTTGGGCAAGGGGGTGTGAGCATGAAGTATGCCAAATTTACCAACTTAAAGGAGTTTGTATTACAAAAGATTTGATTGTGTAATTTGGAGAGTTCCTGTAGTGCATTTATAGTTGTGATTGTAACTCAAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K4me1"} |
259 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me1?
Sequence: GTTCCCAGGCTTCCCCCTAGCCTTTGCTTTACTTGCTGTGCCCAGTTCCATGAGAAGGAGTTGTTACATTTCTTCTTCCTAAAGCAGTGATCGGTGCTTCTGCCCTGGTGGAGAAGGCTTGAGCAGTCCCCGGCTAGCGGCTGTTGCCACCTACAAGCCCCTGCCTCCATTAGGAAGCCATTTATTTATGGGGCCTAGGTAGGGGCAGGAGGT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
260 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GAATTCTCAGGGAATTACATTTGGTATGATTGGGGAAAAGAAAGAAAGAGGGAAGTTAGTTTAGATCCCAGTTTGTGGTCCTCCGTAAGAGCTACCAAACAACCTTAGGTATAAGCTCAGGTTTATGCTGGGTCAGGCATTGAGTATATGCCTGTTAGTCAATGGTGAACTTCTCCTACCAAAAAAGAAAAAGCAGTTACT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
261 | 4_histone_marks | Sequence: AAGGAGAAATAACTGCGGGCAGGTTTCCCAAACAGCAGGGGAAACCACATCCCCGCGCAGCGTGCTCCTCCCAGGGAACAGAACAGGGAAACCACATCCCCGCGCAGTGTGCTCCCCCGGCAGAGGTCCTAAGGAAGCCGAGGGGCGGACAGCCGAGCAGAGGTAAGGCTTTCTGTGGTCCGTGATGGAGGAACCAAGGCCAACTGCAGCACAAGTTGAGGGAGCATTGTACTGAGAAGTGGACGCCTGCCAGGAGTCCACTCTTCACAGAATGAACAGCACCTTCAAGGCACTGGGATCAGCAGAGAAG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
262 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: CAGTGTTTCTTGTGCATTCTTCACCATCATTTGGAGCCACCACCTTGGCAACGTCTGTAGACAAGGAGATAAGGGACTCTCAAATCTATCCTTGAAGAGGAAGTGGCCCCAGAGTTCCGATAAAATCCTGCCGTATACGGGCTGTATAAAAGCAATTTGACCACTTGCGATTTTGAGTCTTAAGAATCTTTCAATTTCTCAGCCTCTGGCAGGAGTAAGAGAATAAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
263 | 4_histone_marks | Can you confirm that the K562 DNA sequence CTCAGCCCCAGGAAGGTGAAGCGCAGCAGTGAGTCATATGTTAAGCCAAGAAAAGCACTTAAAAGCCAATGGCGGCTAGTGAGCTGTGGCATCTCTACCTGGTGGAACTGAAGCCTGAAGCCAGGGATGCTGAAGACCTGAAATGAGGGACCACTTTATGATGTGTGTAAGGAATAAAGGACATATACGCAGATGATGGCAAACTGATAAAAATGTAAATGCATACAAATATTGAAGAAAACAGGCAATGATGAAAGGAAGGTTTAAAAAAAAAACT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
264 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TCAGCACACGCAGAGTTGTACAACCATCACCACCATCAATTTCAGAACAGTTTTGTCACCCCAGGAAGAAACCCGTCAGCCATCACCCCTCTGACCCTCCCACTCTCCCAGGCCTAGGTGACCGCTAACCTTCTTCCTGTCCCCATGGACTTGCCTATTTGGGACGTCTCCTGTGATGGAGTCAGGCAGTCTGCGGCC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
265 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CAGCGTGCGCCTGTAATACCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCCGGGCAACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAAGAGCCGGGAGCAGTGTGGGCTCAA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
266 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K27me3 modification?
Sequence: AAATGTGTGCTCATTTTACAATAAAAATAAATTTTCACATGAGTAACTCAGAAAACAGAAATCATATTATCATTTATGACATTATGTCCACTGGATACTTTCTTTCAAAGTGCTATGAAGGCAAATATACTTGTTTCTTCAGCCTGAAAGAATCATTTACCAGTTTCCCGATGCTATCAGCTAAGTATTCCACCAAAGAGGGAAAAATGACGCTTGGTCC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
267 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: AAGAAAAAGAAGGAAGGTAACTAACTTTGACTGAACACCTGATACGTGCTAAATGATTTCTCAGACAAGATCTTATTTAAATATTTCTAAATGATTTGATGATAATGTTAATGGCCTTCTGGCCCCCAAAAGCACACTGCCTCTTGGTCCCAAATAAATGAGGAAAATATCCAGTTTGTGGAATAGAGGGGCAGGTAAGTAAAAAAAGAAAAAGAAATGCAAAGAAGGA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
268 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence GAGGCCGCGGACCTTCGCAGGGAGTGTTACAGCTCTTAAAGGTGGCGCATCCGCGTTGTTCCTTCCTCCCAGCGGGTTCGTAGTTTCGCCGACCTCAGGAGTGAAGCCACAGACCTTCGCAGGGAGTGTTACACCTCTTAAAAGTGGTGCGTCTGGAGTTGTTTGCTCCTCCCTGTGGGTTCGTGGTGTCGCTGACTTCAGGAGTGAAGCCACAGACCTTCACAGTGAGTGTTATGGCTCTTAAAGGTGGCGGCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
269 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: TAAAAAAGTTTCACTGCTAAGCCAAATAATGTCACTGTAACTTTTCCTTTCATTTTTCCTATCCCTAGAAACTTTTTGTTTATCCCTAGAGTTAAGAATTCCTGGCCTCCATGGTAGCTCACGCCTGTAATCCCAGGACTTTGGAAGCCCGAGGTGAGTGGATTCCTTGAGCCCAGGAATTAGAGACCAGGATGAACAACATGGGGAAACCTCGTCTCTACCCCGCAAAAAAACACACGAAAATTAGCCAGGCGTGGTGATGC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H3K27me3"} |
270 | 4_histone_marks | Is H3K9me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CTGTCTGCCTGGAAGGGTCACCAATGGGCGCGGAAAGTCCTCACTCTCATGGCTCGGGCCATCGCCGCCGCGGGGAGGGATCCTGGCGGCCCGGTTTGGGGAGAGGCAAAGGGAGTTGGGTGAGGAGAGAAAGAAGACAAAGAAGACACTCGATGCTACGGGGCGCCAGGAGAGCCCAAGCTGGCGCCCCTACTACCACCTGCCCGTTCCCAAGCG... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K36me3"} |
271 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me1?
Sequence: GTGGTTTATATGAAACTTCTTAACCAGTGTACATGTATATGCTTTCAAGTTAAATTATTCTAAGGTATCAACTGCAACGTATTCAGTCTCTCCTGAAGAAATACAGAAACCAAGTCCACCGATATCTGTGGCTGATGACTGACAATTTAACTGAACAAAACAAGAAGAAGGCAAGGATTGGAATTATTTGTTCCTAACTTTCCATTAGGTACT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
272 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence CCCACATAAATGAAAGTCTGAAGTCAGCTATCCAGACTGATACAGTGCTCCACGAGGTAGGTTCCTTTGCTCTTGTTCCACTGTCTCTGCAAATGGCTTGAGCTGCTTGAGCTCCAGCCATCACGTCTATATCCTAGCCAACAAGAAGGAGGAAAGACAAAAAGAAATTTTTGTCTCTTTCCTTTGAATACACTTTCAGAAAGTCACACAGGCACTGCATATATTCCAGTGGCCAGAGCTTAATCTCACAGAAAGAAAGA... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H2AFZ"} |
273 | 4_histone_marks | Can you confirm that the K562 DNA sequence GCAGGAAGGCAACTTACCACGTCAACACAATTGCAGAGCAAAGCCAGGAGATGGGGCAGGAGGCTATAGTCAGCCCTGTCACCCAGTCATCACACTGCTACCCCAAGCCAGCAAGCGGAGCTCAGGGAGAGGGGGCACACGGCGGCCAAGGAGGCAACGCACTCTCTAACAAAAACAGTCCTCCAATTTCCAACCAGATTTGACAACTGACTCCATTTTCTTCCTACTTTATTTTGAAGTGGTAGACAGGGTAAGAAAAGGGACTCCAGTCAGGAGG... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H4K20me1"} |
274 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GATTAGCATATAGCATTATGCAGTGTTTCCCAAACTACCACACTACACTATATTTGTGTAAAAAGCTCCCAAAACGCCTGTTAAAAAATGTAGACTTTCTGCTTCATCCCAGAGTTTGGTTTAGTAAGGCTGGGATGGGGTCCAGGAACTGCAATTTTAAGGACCTCCCCTGTCCCCAGGGCAGCTCTTCAGTAAACACA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
275 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GTGCAGGAGGCCAGGCGGCTCGCCTTACAGGGACCCGGCCACCTCTATATATAGCCCCTCGAAGACAGCTGCTCAGTCTAAGCAAACCCCAGCAGGAAAGCAGGGGTACAGAGAGGAGCCCCCTTGGCACCGCCACCGCACCCTAGGCCACCCACCATGGCGCTGGGCTTGGAGCAGGCGGAGGAGCAGCGGTTGTACCAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
276 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K27ac signature. Is this correct?
Sequence: GGGTGGCAGTTGGCTGCGTAATTGGGCCTATGAAAAAAGATCAAGCTAGCAACCAGGGCAATTGATGCTTTCATTTTCCCACACGACGCCAGAAATATGGGAGACATCAGGAACCGGAGCGAAGGGACATGTCAAGTCACCAGTTCCTTTTAATGAACACTCCTGCCGAACCCTTCAGCTCTCGGCCCACTTCCCTCTGAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K27ac", "truth": "H2AFZ"} |
277 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: GCAGAGCTGAGTCATTGCAGTAGAGTCCGTATGGCCCACAGAGTCTGAGGTATTTACTATCTGGCCTTTTACAGAAAGTCTGCCAGTCCTGTTCTACAGTGCCTTTGCCTTTTCACACTAGGGCTTTCTATTAGTCTGTTTTCACACTGCTATAAAGACCTACCCGAGACTGGGTAATTTATGAAGAAAAGAGTTTTAACTGACTCATAGTTTCACAAGCTTAACAGGA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
278 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: AAAATAATTAAATAAATTCCAATTCATTCACCATCTTTACATATTGACTCGGCTGTCACAGTCGTGAGGTTACTGGGAGTCCTTCTAGGGCTCTAGACTACTCATCCTCAAGGATACAAACAAAGACTGAAGATATTGGCTGCAAAAGCTATTACTGACACTCAGAGCACTTGCTCAGGGTTGATATTTGGCATTCCAGTGGGCATACTGGAACTCATGCCAAGTTAGAAAGGAGGAGACTGGCTCTGGCACGTGGTAGATCCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9me3"} |
279 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence TCAGTGGGTGCGGGCACCGTGTGTGAGCGGAAGCAGGGTGAGGCATTGCCTCACTCGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCTAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCAAATACTGCACTTTTCTGACCGGCTTAAAAAACGGCACACCACGAGATTATATCCGGCACCTGGCTTGGAGGGTCCTACACCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTGA... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K4me3"} |
280 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CAAAGTGCTGAGATTATAGGTCTGAGCCACTGGATTTTCTCACCCTCAGAACTGTGAGCCAACAAATTTCTGTTCTTTATAAATTGCCCAGTCTGTGGTATTCTGCTATAGCAGCACAAAATGGGCTAAGATACTGGGCCGACCAGATTCCTCCAGGAATACGAATTAGGATGGATGTAAAACATGCAGATTCAGGACTCATGGGTCCTTCTGCCCTGCAGTGTAGAAC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
281 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K9me3 signature. Is this correct?
Sequence: CGCGGCCGGAGGGAGCGAGGGAGGGGCGCCCCTCGCTGGCCAACCCTAACTGCGGCCGCTGGGCTCCCGGGTTCCGCGCCGTCCTCGAGCGGGTTCCCACTTCACAGACAGGGAGACTGAGGGCCGGAGAGGCTGCCCCTTTGCTGCGAGCTTGCTGAGGGCGGGGCGCGCCGTCTAGCAGATCTTAGACCAGCCCCTCGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9ac"} |
282 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: AAAATAAAGAAACAAAAAGATCTGAGGAACCACACCTGATTCGCGTCTTGTCTGTGCAGCAAATGTAGCAGTGGCCAGCGTGCTTGTGCCAGAATGCTGGTAGACTGGGAAGCTCGTGACCTTATTCCATTTGCTACAAGTATTTTATTTTGGAGTTATTTCTGGCCAGGCGCAGTGGTTTACGCCTCTAATCCCAGCACTTTGGGAGGCCAAATCATGCCTACTTT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
283 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me3?
Sequence: CAGCACCCTTCTCCCTCAGACCCTGGAGTCCAGGTCCCCAGCGCCCTCCTCCTTCAGACCCAGGAGTCCATGCCCCCAGCGCCCTTCTCCCTCAGACCCAGGAATCCAGGCCCCCAGTGCCCTCCTCTCTCAGACCCAGGAGTTCTGGAATTCAGGCCCCTCCTTCTCGGATACTAAGAAATGCAGACTCCGGGTTCCTCATCCTCCAGATTT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
284 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GGGGCCGACAGACACCTCATACAGGCTGGTGCCCCCTGGGACAAAGCTTCCAGAGGAAGGATCAGGCAGCAATATTTGCTGTTCTGCAGCCTCTGCTGGTGATACCCAGGCAAACAGGGTCTGGAGTGGACCTCCAGCAAACTCCAACAGACCTGCAGCTGAGGGGCCTGTGAGAAGGAAAACAAACAAACAGAAAGGAAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
285 | 4_histone_marks | Sequence: AAATTAATGTATTTAACACATTTTTCCCAAACTCCAGATGTGATTATTCTGTTGTCTGTTTTACATTTCCACTAGAAATAGGCATCTTGATTGCATGCCCTTTACCCCACACTGGCTCCTTCCTGGGTTTGCCTTTCGTGCATGCAGCTCTCAGGCCACAAGCCCAGGAGGCATCCTGATTCCTCTGTTCACTCATCACACAGCTCACCTGGCAGCAAGTTCTTTCCACTTGCCCTAGCAAATACGCACATCCTAAATCTCACTGCTTCTCCCACCATCACTTCTCTTCTGGGTAGCCTCAGAAGCCTCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
286 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: TGACATGGCTTTAGTATCCTCCACTTCCTAGGGTACCAGGAAATCTCCCCTGCTTTCCCAAGAGCTTGCTGAAGAAGGTGTACCGCAGTAGACTTCTGCATCCAGACAAATCCAGTGGCTCATGTGTACAGCCGAATAAATCCGGCCAACATTTACTGTGTGCTATAGTACAGCTACTGTGCTAAGGCTTTACATAAAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
287 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: GTGAAATAACAGAGACCATAAGATTAGCTCTCACTCAAACTAAATGTCCATCAGGGCTTGACAGTGACTCTGTTCCAGGCCACCTTCTCTAGTGGACAGGTTCCTCCACTGCTGAGACAACCCCATAAGGAAGAAGGACCAATATAGTCCCCAGTGATGTGTTGGTGAATGATTAATAACAGTTCTGTGAGGGTAGACAGTGTCTGTGTGTGTGTGTGTGTGTGTGTGC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
288 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GGGGTGAGGTCGGCGGGAAGGGTCCCAGAGCCGGGGGAGATGGAGGGCGGGGGATGTGGGGAGAGGGAACAGGTTCGCTGGAAGCAGGAGGCGCGGGCGGGGCTGGACCAGGAGACCTGACGGGAGGATGCTCCGTGTGTGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGACAGAGAGAGAGAGAGAGAGAAGAGCGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
289 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K27ac?
Sequence: CAACCAGGCCCCACTGGAAATCGTCTCGAAACTGCTCTCAGAGGTAAAACCCCTCCCCTGGACCCCTTTACATTGTTTGCCTTTCCCTCCACCGATCACCGGCTCCATGCCAAGCAGCAGGCGCAGGCAGAGCTCCGTGTGGGCTGTGTTGTTGCCCTGCTGCCGAAGGAGGTGAGCAGTTGCCCACCCAGCCGTGTGTGGGAGTTGGGAGAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K27ac", "truth": "H3K4me3"} |
290 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: ACCCAGTTACTTCGTTCTTCAGGTGTTGCAAAACTCATCAGCAAGCACCTAGGCAATTACTGTTCAAAATATCTATGCAGTCTACTAGACTTAAGATTCAGAAAGGCAGAAACCACATATACCTTGTTCACAGCTGGACTTCTCAGTGTCTAGTACTAGGATTCTCAATACATATCTGTTGAAGTTATGATGA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
291 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: CTGGTTTCTGGTCTGACACGTATAAGGAACTTATAAGTCTTAATACCATCCTAATAAGTAGAACAACTTGTTAAAGTTGAACAACCCGAAAAGTTAAGAAGGCCTCTTGGATCTGTCAGTGAATTGAGGTCACAGGGCAAACCACTACCCCATAACTGGAGAGACACATAGGCAGATACAGAGAACGACAACT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
292 | 4_histone_marks | Sequence: GCCTGAACTCTGCTAAGACCTACGCATAGTTAAGTGATAACCAGCCACTGCTTCCTAGCTTGCTTACTGCTCACCAGTTATGCAGCCAGGGATCACAAGACTTGTAACTTCCCAAGTCTCTCCTATAGATAACATCACTATTGTAAAACCTAAGATAGGTCTTTGAGATTTTTTTTACAATTTTACATTCTGGCAAACTGATTAATGCCACCTGGACCTGTGACTCAACTGATTCTGTGAACTCCACACAGAAAGCAACTCAGCATGCAAACATAATTCCAACATTTCTATGACTTTACCCACAACCAAT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
293 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence TATCCATTTACTGAGTCACGTCTACTCCACCCTATGAAAGTATGCTCACTTTTGTTGCACCCACACTATTTAACACATAAAGCAGGGGTCCCCGATTATTGTGCTGCTAGCGTGCGCTGGCTCCTGAGGCCTCATACCTATGGCTCTCATCCCCCATCTCGCCGCTTCCCACCAGTACCCTTTTCCTAGGGTCTCCCTGACTTCCTTCATCAACTTGGACCTTTCACAGTTTTACAGACACAGTCCTTAGTCTCTGGTGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K27me3", "truth": "H2AFZ"} |
294 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: GGTAGTGCACGTGGGTGGTGTGGGGGGCCTTGCCCTGCCGCGCTGTCCTTTTCTGCTCGAGTTTTCGCAACACCTCTTCCACCGGGATAGCCTGCTTCTCCTCTTGAGGGACTGCGCGCTGTCTTATACCAAAGTCCACCATTTTGCGTGGGTAGGACCCTCCACCCTGGCCTGTGGGATTTGGAGTCACCTTTCTAGCTCCTTTCTCTTGCTTTACTACT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
295 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me1?
Sequence: ACCATAAATTCCTACTCCTTTAGTGTAAGCTATACATAGTGACTTCCTCCCAAAGAGTGTAGAATGGAAAGTTGAGGGTGGAGGAAAGGGAGGGGAGCAGAGTAACTTTACTCTGGGGAAACTTGACAAATGACCTCAGCTAGGTGATCAAGGTCAATATGAACAGTCATAAATCATGTTGGTAGTATATGCCATTGACAGGATGTGATAAAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me1", "truth": "H3K27ac"} |
296 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GGGTTTCATCTCTACTAATGTTGACCAGGGTGATCTCGAACTCCTGACCTCAAATCTCGAATGTTGGCCAAGGTGGTCTCGAATTCCTGACCTCAAATGATCTGCCCACCTCGACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCAGAAAATACTTAAATCATTCTTTGACACTTTTCCTGAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
297 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: CTCTCACTAGAAATCTGACATAGCTGTTAGAACAACTTTGTTTTTTAACCCTGTTATACTGAAATATGTTTACTTCAGGGGTTATTAATTTTGAGGTTCCTTCCTGTTCTTCATCTCCCTTTTGTTAGATTGCTATGTTATTCTTGAACAACTTCCTTTTTCTCCCTCCTTTCCTACCATGATTTCTTCCA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
298 | 4_histone_marks | Sequence: GAGGTAGGCAAAACTGGAGGAGGAAACCGGGGAGGAGGAGTGAGTCTCTAACTCCCCACGCTGTGTGGCCTAATAAGCCTTGATCTGTGTTCTACAGACTCTGAGCTCTGTGCTCCTCTCTGGGGAACAGGTGGAAAGGGCAGCCCTCCAGGAGGTGGTGAGTCCTCTGAGCTTTGGAAGGGTGGACTCTGCACCTGCTGCGCTGGTGCTCTCTGGGAATTTTCTCCACGGACCTCCAGAGCAACTGTGAGTGGTAGCTGTTACCATTCCCATTTGACTGGTTCAGAAACCTTGCCTGAGGGACATGAAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
299 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TGATAGATGTGTTGCTTAGTTACTTTGGCCCTTGTGTGTCACCTCCATCCCATAATTTTAAGTACATGAGTGATTTGCAGTCCATATGCATGAGCTTCAATGAGCTAATTACCAAACGGGGTCATTTTAAGGATACTTTTTCTCTTTAATGTGCATGCCCATCTCTGAGGAGCTGCCCGCAACAGGTTTGGTCCGGAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
300 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: ATGGCCTGTGGGCTTGTTTTTATTTTCTCCGCTTAGTGCCGGACACCATCTTGGAGGACGAGTGTGGGTTTCCTGCGTTAAAGCAGCCGGCCGGGCAGAGCTGAGCAAACCCCAGGACTTCCGACTCAGAATCTACACAGAACACAGCCTCCCTCGGACTGATGTTTGCTCTGCCCTTCACAGTTTGAAGATA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
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